| HMMscan | nr | KOG | KEGG | PDB | ITAG2.3 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| SNP ID | Array type ( I: Infinium G: Goldengate) |
Chromosome | Position on the SL2.40 | Location | IUPAC | SNP genotype (Heinz 1706-BG) | SNP genotype (Mutation) | Strand | Codon (Heinz 1706-BG) | Codon (Mutation) | Amino acid residue (Heinz 1706-BG) | Amino acid residue (Mutation) | SNP category | ITAG gene model | Functional site | Flanking sequences on SNP | HZ (The 40 lines) | HZ (cluster 1) | HZ (cluster 2) | HZ (cluster 3) | HZ (cluster 4) | San Marzano | Rutgers | Ponderosa | Aichi First | S. lycopersicum var cerasiforme (WIR25/30) | S. lycopersicum var cerasiforme (TOMJPF00009) | Earliana | Best Of All | Money Maker | Ailsa Craig | LA925 | Fruit | Rio Grande | Marglobe | Heinz 1706-BG | Tomato Chuukanbohon Nou 9 | Furikoma | Tomato Chuukanbohon Nou 11 | Reika | Momotaro 8 | Labell | Matrix | Geronimo | Micro-Tom_AM | Micro-Tom TGRC (LA3911) | Micro-Tom_MM | Micro-Tom | Micro-Tom NBRP (TOMJPF00001) | M82_MM | M82 | Regina | Sweet100 | S. pimpinellifolium (TOMJPF00012) | S. pimpinellifolium (LS1513) | S. pimpinellifolium (PI344102) | S. chilense (LA1958) | S. peruvianum (WIR2020) | S. peruvianum (TOMJPF00010) | S. pennellii (TOMJPF00008) | S. pennellii (LA716) | E-value | Model | HMMscan definition | nr definition | Product (KDRI) | E-value | Length% | Identity% | Positive% | KOG id | KOG No. | KOG definition | E-value | Length% | Identity% | Positive% | KO | E-value | Length% | Identity% | Positive% | Gene name [structural model (tomato)] (Structures with links can be browsed by Jmol.) |
PDB id | PDB definition | E-value | Length% | Identity% | Positive% | ITAG (interpro) |
| solcap_snp_sl_15058 | I | SL2.40ch01 | 45434 | genome | Y | C | T | # | # | # | # | # | gSNP | # | # | ACAATATACTCAGTGTATTAGAAGTGTGGCCTGGAGAGGGTAGGATGTAC[A/G]CGACCTTACCTCTACCTTTGAAGGGTGGAGAGGTTGTTTCCGATAGACCC | 0.5 | 0.3 | 0 | 0.18 | 0.47 | GG | GG | GG | GG | GG | GG | GG | AA | AA | AA | AA | GG | AG | AA | GG | AA | GG | GG | AA | AG | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AG | GG | GG | GG | GG | AG | AA | GG | GG | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | # |
| solcap_snp_sl_60635 | I | SL2.40ch01 | 47132 | exon | R | G | A | + | ccG | ccA | P | P | sSNP | Solyc01g005030.2.1 | # | TATCCACGTCCGATCCTATGTTTAAGTTTGATTGAAGCAGGATCAATGTA[T/C]GGACCGGCTGGGGCAGGTGCAGCAACAACAGTTCTAAGATGATCAGGATC | 0.07 | 0.22 | 0 | 0 | 0 | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | TC | CC | CC | TT | CC | CC | CC | CC | CC | - | - | - | gi|15226383|ref|NP_178306.1| putative endomembrane protein 70 [Arabidopsis thaliana]gi|4406780|gb|AAD20090.1| putative endosomal protein [Arabidopsis thaliana]gi|16604501|gb|AAL24256.1| At2g01970/F14H20.4 [Arabidopsis thaliana]gi|110741070|dbj|BAE98629.1| putative endosomal protein [Arabidopsis thaliana]gi|330250434|gb|AEC05528.1| putative endomembrane protein 70 [Arabidopsis thaliana] | putative endomembrane protein 70 | 0 | 51.4 | 36.8 | 42.4 | U | KOG1277 | Endosomal membrane proteins, EMP70 | 0 | 51.4 | 36.8 | 42.4 | - | - | - | - | - | Solyc01g005030.2.1 | 2R5T | gi|198443065|pdb|2R5T|A Chain A, Crystal Structure Of Inactive Serum And Glucocorticoid- Regulated Kinase 1 In Complex With Amp-Pnpgi|242556642|pdb|3HDM|A Chain A, Crystal Structure Of Serum And Glucocorticoid-Regulated Kinase 1 In Complex With Compound 1gi|242556645|pdb|3HDN|A Chain A, Crystal Structure Of Serum And Glucocorticoid-Regulated Kinase 1 In Complex With Compound 2 | 9.00E-15 | 32.4 | 6.5 | 10.2 | Name=IPR004240;Note=Nonaspanin (TM9SF) |
| solcap_snp_sl_60604 | I | SL2.40ch01 | 192109 | exon | K | G | T | - | atC | atA | I | I | sSNP | Solyc01g005250.2.1 | # | ATCTTTGTTTGTGGTGATCAAATACGCAAAGGAGCCGCCCTTAATGCTAT[A/C]CAGATTGCAGAAATGTTGTTGTAGATTTGCGATATAGCACCCTTAAAGGT | 0.18 | 0.38 | 0 | 0.42 | 0 | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | AC | CC | AC | CC | AC | CC | CC | CC | CC | CC | CC | CC | CC | AC | CC | AA | AA | CC | CC | CC | CC | CC | - | - | - | gi|302353426|gb|ADL27919.1| aspartate-semialdehyde dehydrogenase 2 [Glycine max] | aspartate-semialdehyde dehydrogenase 2 | 1.00E-172 | 98.7 | 79.8 | 87.9 | E | KOG4777 | Aspartate-semialdehyde dehydrogenase | 1.00E-173 | 98.4 | 80.1 | 87.9 | K00133_pop-POPTR_566429 | 1.00E-174 | 98.4 | 77.7 | 86.6 | Solyc01g005250.2.1 | 2YV3 | gi|158431281|pdb|2YV3|A Chain A, Crystal Structure Of Aspartate Semialdehyde Dehydrogenase From Thermus Thermophilus Hb8gi|158431282|pdb|2YV3|B Chain B, Crystal Structure Of Aspartate Semialdehyde Dehydrogenase From Thermus Thermophilus Hb8 | 6.00E-89 | 86.9 | 44.4 | 58.0 | Name=IPR012080;Note=Aspartate-semialdehyde dehydrogenase |
| solcap_snp_sl_15056 | I | SL2.40ch01 | 259974 | exon | M | C | A | + | caC | caA | H | Q | cSNP | Solyc01g005370.2.1 | # | TCCGAAAACGAGATTTTTCCGTCGCCGTTGATGTCAAATTTGTTGAATAC[T/G]TGTTGTAGCTCCTCTTCTATCATGACCGGAGTGTTCACCGGCGGGGAATT | 0.32 | 0 | 0 | 0 | 0.48 | TT | GG | GG | GG | TT | TT | GG | TT | TT | TT | TT | GG | TT | TT | GG | TT | GG | GG | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | 2.70E-31 | efhand | EF hand | gi|255570063|ref|XP_002525994.1| Polcalcin Jun o, putative [Ricinus communis]gi|223534726|gb|EEF36418.1| Polcalcin Jun o, putative [Ricinus communis] | Polcalcin Jun o, putative | 8.00E-53 | 110.5 | 65.7 | 76.2 | T | KOG0027 | Calmodulin and related proteins (EF-Hand superfamily) | 1.00E-47 | 108.1 | 54.1 | 66.9 | K13448_rcu-RCOM_0597990 | 2.00E-53 | 110.5 | 65.7 | 76.2 | Solyc01g005370.2.1 | 2K0J | gi|224983343|pdb|2K0J|A Chain A, Solution Structure Of Cam Complexed To Drp1pgi|229597554|pdb|2K61|A Chain A, Solution Structure Of Cam Complexed To Dapk Peptide | 5.00E-28 | 86.0 | 37.2 | 51.2 | Name=IPR018248;Note=EF-hand |
| solcap_snp_sl_15055 | I | SL2.40ch01 | 299550 | exon | R | A | G | + | Atg | Gtg | M | V | cSNP | Solyc01g005430.2.1 | # | TGATCCATCTAATGGCTTTCCTGAAACATACACACTAACACATTCTTCCA[T/C]TCCACTCTTAACTTCTTCATCTTTATTTTCAACTCCCAAATCACTCACTT | 0.36 | 0.22 | 0 | 0.18 | 0.48 | CC | TT | TT | TT | CC | CC | TT | CC | CC | CC | CC | TT | CC | CC | TT | CC | TT | TT | CC | TC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | TT | CC | CC | CC | CC | CC | CC | CC | - | - | - | gi|255570041|ref|XP_002525983.1| nucleic acid binding protein, putative [Ricinus communis]gi|223534715|gb|EEF36407.1| nucleic acid binding protein, putative [Ricinus communis] | nucleic acid binding protein, putative | 1.00E-145 | 103.1 | 60.5 | 78.1 | O | KOG2699 | Predicted ubiquitin regulatory protein | 1.00E-149 | 102.0 | 62.7 | 77.6 | K14011_ath-AT2G01650 | 1.00E-150 | 100.4 | 62.5 | 77.6 | Solyc01g005430.2.1 | - | - | - | - | - | - | Name=IPR006567;Note=PUG domain |
| solcap_snp_sl_15054 | I | SL2.40ch01 | 299696 | exon | R | A | G | + | gaA | gaG | E | E | sSNP | Solyc01g005430.2.1 | # | AATCCAACAAATTCCAATAGCTCAACTCCTCCTACAACATCACCTATAGC[T/C]TCCTTTATCTTCGGATTCCCCATCCGTATCTTCCTAAACTTCGCATTCGT | 0.45 | 0.47 | 0 | 0.48 | 0.48 | CC | TT | TT | TT | CC | CC | TT | CC | CC | CC | CC | TT | CC | CC | TT | CC | TT | TT | TC | TC | TC | CC | TC | CC | CC | CC | CC | CC | CC | CC | CC | TC | TT | TT | TT | CC | CC | CC | CC | CC | 1.70E-18 | PUB | PUB domain | gi|255570041|ref|XP_002525983.1| nucleic acid binding protein, putative [Ricinus communis]gi|223534715|gb|EEF36407.1| nucleic acid binding protein, putative [Ricinus communis] | nucleic acid binding protein, putative | 1.00E-145 | 103.1 | 60.5 | 78.1 | O | KOG2699 | Predicted ubiquitin regulatory protein | 1.00E-149 | 102.0 | 62.7 | 77.6 | K14011_ath-AT2G01650 | 1.00E-150 | 100.4 | 62.5 | 77.6 | Solyc01g005430.2.1 | - | - | - | - | - | - | Name=IPR006567;Note=PUG domain |
| solcap_snp_sl_15052 | I | SL2.40ch01 | 301597 | exon | K | T | G | + | cgT | cgG | R | R | sSNP | Solyc01g005430.2.1 | # | CGGATAATGGATCTGTTGTACTTCTTTCTTGCAGCTTTTGCCTGCTTTTC[A/C]CGAAAAGATTTAGGAATCAATAATTTCGACTCCTCTAGTTTCTTCCTCTT | 0.45 | 0.47 | 0 | 0.48 | 0.48 | CC | AA | AA | AA | CC | CC | AA | CC | CC | CC | CC | AA | CC | CC | AA | CC | AA | AA | AC | AC | AC | CC | AC | CC | CC | CC | CC | CC | CC | CC | CC | AC | AA | AA | AA | CC | CC | CC | CC | CC | - | - | - | gi|255570041|ref|XP_002525983.1| nucleic acid binding protein, putative [Ricinus communis]gi|223534715|gb|EEF36407.1| nucleic acid binding protein, putative [Ricinus communis] | nucleic acid binding protein, putative | 1.00E-145 | 103.1 | 60.5 | 78.1 | O | KOG2699 | Predicted ubiquitin regulatory protein | 1.00E-149 | 102.0 | 62.7 | 77.6 | K14011_ath-AT2G01650 | 1.00E-150 | 100.4 | 62.5 | 77.6 | Solyc01g005430.2.1 | - | - | - | - | - | - | Name=IPR006567;Note=PUG domain |
| solcap_snp_sl_15051 | I | SL2.40ch01 | 301603 | exon | R | G | A | + | aaG | aaA | K | K | sSNP | Solyc01g005430.2.1 | # | TGAATTCGGATAATGGATCTGTTGTACTTCTTTCTTGCAGCTTTTGCCTG[T/C]TTTTCACGAAAAGATTTAGGAATCAATAATTTCGACTCCTCTAGTTTCTT | 0.5 | 0 | 0 | 0.48 | 0.48 | TT | CC | CC | CC | TT | TT | CC | TT | TT | TT | TT | CC | TT | TT | CC | TT | CC | CC | TC | TC | TC | TT | TC | TT | TT | TT | TT | TT | TT | TT | TT | TC | CC | CC | CC | CC | CC | CC | CC | CC | - | - | - | gi|255570041|ref|XP_002525983.1| nucleic acid binding protein, putative [Ricinus communis]gi|223534715|gb|EEF36407.1| nucleic acid binding protein, putative [Ricinus communis] | nucleic acid binding protein, putative | 1.00E-145 | 103.1 | 60.5 | 78.1 | O | KOG2699 | Predicted ubiquitin regulatory protein | 1.00E-149 | 102.0 | 62.7 | 77.6 | K14011_ath-AT2G01650 | 1.00E-150 | 100.4 | 62.5 | 77.6 | Solyc01g005430.2.1 | - | - | - | - | - | - | Name=IPR006567;Note=PUG domain |
| solcap_snp_sl_15050 | I | SL2.40ch01 | 303076 | exon | R | G | A | + | ccG | ccA | P | P | sSNP | Solyc01g005430.2.1 | # | CTCTCCCCGGTAGCTGGAAAATGGGGTATCACCCGCCTCTTGACAAGCAC[T/C]GGATGTAACAAATCAAACTCTAAGCTTGGTTCCTTTAACGCCGAGCTCAC | 0.5 | 0 | 0 | 0.48 | 0.48 | TT | CC | CC | CC | TT | TT | CC | TT | TT | TT | TT | CC | TT | TT | CC | TT | CC | CC | TC | TC | TC | TT | TC | TT | TT | TT | TT | TT | TT | TT | TT | TC | CC | CC | CC | CC | CC | CC | CC | CC | 4.00E-07 | UBX | UBX domain | gi|255570041|ref|XP_002525983.1| nucleic acid binding protein, putative [Ricinus communis]gi|223534715|gb|EEF36407.1| nucleic acid binding protein, putative [Ricinus communis] | nucleic acid binding protein, putative | 1.00E-145 | 103.1 | 60.5 | 78.1 | O | KOG2699 | Predicted ubiquitin regulatory protein | 1.00E-149 | 102.0 | 62.7 | 77.6 | K14011_ath-AT2G01650 | 1.00E-150 | 100.4 | 62.5 | 77.6 | Solyc01g005430.2.1 | - | - | - | - | - | - | Name=IPR006567;Note=PUG domain |
| solcap_snp_sl_15049 | I | SL2.40ch01 | 303202 | exon | Y | C | T | + | gtC | gtT | V | V | sSNP | Solyc01g005430.2.1 | # | TCGAGTGGCTCGCTGATTTCAAGAAGTTCATTGCAAAGACCTGTAAAAAC[A/G]ACGGAATCTGTTTCTATAGGTTTAAATTTGAGTAGAGCTGAAGGAATCAA | 0.49 | 0.22 | 0 | 0.48 | 0.48 | AA | GG | GG | GG | AA | AA | GG | AA | AA | AA | AA | GG | AA | AA | GG | AA | GG | GG | AG | AG | AG | AA | AG | AA | AA | AA | AA | AA | AA | AA | AA | AG | AA | GG | GG | GG | GG | GG | GG | GG | - | - | - | gi|255570041|ref|XP_002525983.1| nucleic acid binding protein, putative [Ricinus communis]gi|223534715|gb|EEF36407.1| nucleic acid binding protein, putative [Ricinus communis] | nucleic acid binding protein, putative | 1.00E-145 | 103.1 | 60.5 | 78.1 | O | KOG2699 | Predicted ubiquitin regulatory protein | 1.00E-149 | 102.0 | 62.7 | 77.6 | K14011_ath-AT2G01650 | 1.00E-150 | 100.4 | 62.5 | 77.6 | Solyc01g005430.2.1 | - | - | - | - | - | - | Name=IPR006567;Note=PUG domain |
| CL004303-0524 | I | SL2.40ch01 | 310894 | exon | R | A | G | + | ggA | ggG | G | G | sSNP | Solyc01g005440.2.1 | # | AGACTCATTTTGGTGGTATTGGCCAGATGAAGCAAGTTCTTGGTGGAATTCCTGTTACAGCTCCTCATTCAATGCTTCCATCGCGTGGCTCTGTGGCTGG[A/G]ACAACCGAACCTTGNNAAGTTCACCATTTTGTGCACANAAAACTGCGTAGATTGTGTTAGAGGAGTCGTATTTGGTAGGTATAATGGCACATCNATNTGC | 0.38 | 0 | 0 | 0.42 | 0 | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AG | AA | AG | AA | AG | AA | AA | AA | AA | AA | AA | AA | AA | AG | GG | GG | GG | GG | GG | GG | GG | GG | - | - | - | gi|350539077|ref|NP_001234373.1| jasmonate ZIM-domain protein 3 [Solanum lycopersicum]gi|164472579|gb|ABY58971.1| jasmonate ZIM-domain protein 3 [Solanum lycopersicum] | jasmonate ZIM-domain protein 3 | 1.00E-175 | 99.0 | 98.7 | 99.0 | - | noCOG | 2.00E-33 | 113.9 | 38.2 | 52.4 | K13464_vvi-100262965 | 6.00E-65 | 125.6 | 42.7 | 54.0 | Solyc01g005440.2.1 | - | - | - | - | - | - | Name=IPR018467;Note=CCT domain-like | |
| solcap_snp_sl_24809 | I | SL2.40ch01 | 324852 | 5utr | R | A | G | - | # | # | # | # | rSNP | Solyc01g005470.2.1 | # | TTCATTTCATTTTCTCTCTAAAAAAAATTCTTATTAAGTTTTTAAGTTAC[T/C]ATGAACCCCTCAGCTCAACCAGCTTACGGTGAAAAACCTATGACTGGTGT | 0.5 | 0 | 0 | 0.48 | 0.47 | CC | TT | TT | TT | CC | CC | TT | TT | TT | CC | CC | TT | TC | TT | TT | CC | TT | TT | TC | TC | TC | TT | TC | TT | TT | TT | TT | TT | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | - | - | - | - | - | - | - | - | - | - | noCOG | 6.00E-51 | 92.7 | 57.3 | 66.5 | - | - | - | - | - | Solyc01g005470.2.1 | - | - | - | - | - | - | Name=IPR006461;Note=Uncharacterised protein family Cys-rich | |
| CL016197-0363_solcap_snp_sl_60559 | I | SL2.40ch01 | 336495 | exon | Y | T | C | + | Ttg | Ctg | L | L | sSNP | Solyc01g005480.2.1 | # | TGTTTCTAAGTGATTGTGGAGGAAAAAGATACCCTTTGTTGCAACATCCA[A/G]TTGCGCCAGATGGACCAGTTCTTTTTTTGCCATTTTTGAAGGGATGCAAG | 0.35 | 0.22 | 0 | 0.42 | 0 | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AG | AA | AG | AA | AG | AA | AA | AA | AA | AA | AA | AA | AA | AG | AA | GG | GG | GG | GG | GG | GG | GG | 2.40E-14 | DUF677 | Protein of unknown function (DUF677) | - | - | - | - | - | - | - | noCOG | 1.00E-61 | 88.8 | 36.2 | 55.3 | - | - | - | - | - | Solyc01g005480.2.1 | - | - | - | - | - | - | Name=IPR007749;Note=Protein of unknown function DUF677 | |
| solcap_snp_sl_60557 | I | SL2.40ch01 | 338651 | exon | Y | C | T | - | Ggt | Agt | G | S | cSNP | Solyc01g005490.2.1 | predicted | TCTCTGTTGCATTTGTAGATGGTGGTGAGGCTGGAAATGTAATCCCTGAA[A/G]GTGTGAAGTTTGGTGGAACATTCCGGTTCTTGACGTTTGAGGGTCATTCC | 0.35 | 0.22 | 0 | 0.42 | 0 | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | AG | GG | AG | GG | AG | GG | GG | GG | GG | GG | GG | GG | GG | AG | GG | AA | AA | AA | AA | AA | AA | AA | 9.30E-30 | Peptidase_M20 | Peptidase family M20/M25/M40 | gi|224138406|ref|XP_002322806.1| iaa-amino acid hydrolase 4 [Populus trichocarpa]gi|222867436|gb|EEF04567.1| iaa-amino acid hydrolase 4 [Populus trichocarpa] | iaa-amino acid hydrolase 4 | 1.00E-165 | 108.9 | 63.8 | 78.6 | - | noCOG | 1.00E-136 | 100.7 | 52.8 | 68.6 | K14664_pop-POPTR_825192 | 1.00E-165 | 108.9 | 63.8 | 78.6 | 1XMB | gi|56554606|pdb|1XMB|A Chain A, X-Ray Structure Of Iaa-Aminoacid Hydrolase From Arabidopsis Thaliana Gene At5g56660gi|150261472|pdb|2Q43|A Chain A, Ensemble Refinement Of The Protein Crystal Structure Of Iaa-Aminoacid Hydrolase From Arabidopsis Thaliana Gene At5g56660 | 1.00E-123 | 95.2 | 49.2 | 65.8 | Name=IPR017439;Note=Peptidase M20D%2C mername-AA028/carboxypeptidase Ss1 | ||
| solcap_snp_sl_15046 | I | SL2.40ch01 | 348201 | exon | R | G | A | - | taC | taT | Y | Y | sSNP | Solyc01g005510.2.1 | # | GGTGAGAAAGTTGCGGAGCCACTATACAAGATGGAGGCTGGTAAGACGTA[T/C]AGGTATAGATTTTGCAATGTAGGTATGAGGACATCAGTGAATGTTAGGAT | 0.5 | 0 | 0 | 0.42 | 0.33 | CC | CC | CC | CC | CC | CC | CC | TT | TT | CC | CC | CC | TC | TT | CC | CC | CC | CC | TC | CC | TT | TT | TT | TT | TT | TT | TT | TT | CC | CC | CC | TC | TT | TT | TT | TT | TT | TT | TT | TT | 2.90E-38 | Cu-oxidase_3 | Multicopper oxidase | gi|37223175|gb|AAQ90183.1| ntp201 [Nicotiana tabacum] | ntp201 | 0 | 100.4 | 91.6 | 96.4 | Q | KOG1263 | Multicopper oxidases | 0 | 99.6 | 65.5 | 78.8 | K00423_ath-AT1G55570 | 0 | 99.6 | 65.5 | 78.8 | Solyc01g005510.2.1 | 1AOZ | gi|442635|pdb|1AOZ|A Chain A, Refined Crystal Structure Of Ascorbate Oxidase At 1.9 Angstroms Resolutiongi|442636|pdb|1AOZ|B Chain B, Refined Crystal Structure Of Ascorbate Oxidase At 1.9 Angstroms Resolutiongi|493837|pdb|1ASO|A Chain A, X-Ray Structures And Mechanistic Implications Of Three Functional Derivatives Of Ascorbate Oxidase From Zucchini: Reduced-, Peroxide-, And Azide-Formsgi|493838|pdb|1ASO|B Chain B, X-Ray Structures And Mechanistic Implications Of Three Functional Derivatives Of Ascorbate Oxidase From Zucchini: Reduced-, Peroxide-, And Azide-Formsgi|493839|pdb|1ASP|A Chain A, X-Ray Structures And Mechanistic Implications Of Three Functional Derivatives Of Ascorbate Oxidase From Zucchini: Reduced-, Peroxide-, And Azide-Formsgi|493840|pdb|1ASP|B Chain B, X-Ray Structures And Mechanistic Implications Of Three Functional Derivatives Of Ascorbate Oxidase From Zucchini: Reduced-, Peroxide-, And Azide-Formsgi|493841|pdb|1ASQ|A Chain A, X-Ray Structures And Mechanistic Implications Of Three Functional Derivatives Of Ascorbate Oxidase From Zucchini: Reduced-, Peroxide-, And Azide-Formsgi|493842|pdb|1ASQ|B Chain B, X-Ray Structures And Mechanistic Implications Of Three Functional Derivatives Of Ascorbate Oxidase From Zucchini: Reduced-, Peroxide-, And Azide-Forms | 3.00E-47 | 99.1 | 25.5 | 45.4 | Name=IPR001117;Note=Multicopper oxidase%2C type 1 |
| solcap_snp_sl_15039 | I | SL2.40ch01 | 482660 | exon | Y | T | C | - | Att | Gtt | I | V | cSNP | Solyc01g005700.2.1 | # | TAAGTGCTGGCGTCGAGAAGAAATCTCAAAATGTATCCATTAGGAAATTT[A/G]TTGATTCTCATTCACATCCTCCTCTAGATTCATCGCAACTGAAACCTCGT | 0.49 | 0 | 0 | 0.42 | 0.44 | AA | AA | AA | AA | GG | GG | AA | GG | GG | AA | AA | AA | AG | GG | AA | AA | AA | AA | AG | AA | GG | GG | GG | AA | AA | AA | AA | AA | AA | AA | AA | AG | GG | GG | GG | GG | GG | GG | GG | GG | - | - | - | - | - | - | - | - | - | - | noCOG | 2.00E-85 | 81.2 | 24.4 | 42.0 | - | - | - | - | - | Solyc01g005700.2.1 | - | - | - | - | - | - | Name=IPR001878;Note=Zinc finger%2C CCHC-type | |
| solcap_snp_sl_33745 | I | SL2.40ch01 | 534448 | 3utr | M | A | C | + | # | # | # | # | uSNP | Solyc01g005810.2.1 | # | TTTGTTCTATCTCTTCGCGTAACATTTGTGTCCAACGAAATCTTTTTGCC[T/G]CGCCACTTAAAAAGCCAAGCTATCATTGTACTGTTGTCTGTCTTGCGCTT | 0.5 | 0.22 | 0 | 0.42 | 0.5 | GG | TT | TT | TT | GG | GG | TT | GG | GG | GG | TT | TT | GG | GG | TT | TT | TT | TT | TG | TT | TG | TT | TG | TT | TT | TT | TT | TT | TT | TT | GG | TG | GG | GG | GG | TT | GG | GG | GG | GG | - | - | - | gi|255589586|ref|XP_002535013.1| maintenance of killer 16 (mak16) protein, putative [Ricinus communis]gi|223524194|gb|EEF27371.1| maintenance of killer 16 (mak16) protein, putative [Ricinus communis] | maintenance of killer 16 (mak16) protein, putative | 1.00E-105 | 100.7 | 73.2 | 80.8 | A | KOG3064 | RNA-binding nuclear protein (MAK16) containing a distinct C4 Zn-finger | 7.00E-96 | 100.3 | 65.9 | 78.8 | K14831_vvi-100267396 | 1.00E-106 | 98.0 | 73.2 | 81.8 | Solyc01g005810.2.1 | - | - | - | - | - | - | Name=IPR006958;Note=Mak16 protein |
| solcap_snp_sl_60513 | I | SL2.40ch01 | 541692 | 3utr | R | G | A | + | # | # | # | # | uSNP | Solyc01g005820.2.1 | # | GCTTGTCTCTACTAATAAACTTATTTCCTTGTCTGTTTTAACTCCTTAAA[T/C]GAGACAAACTAAAATGCATCCATTTTCCCATGCATACACGAAGCACATGA | 0.5 | 0 | 0 | 0.48 | 0.5 | TT | CC | CC | CC | TT | TT | CC | TT | TT | TT | TT | CC | TT | TT | CC | CC | CC | CC | TT | CC | TC | CC | TC | CC | CC | CC | CC | CC | CC | CC | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | - | - | - | gi|9843661|emb|CAC03604.1| SC35-like splicing factor SCL30a, 30a kD [Arabidopsis thaliana] | SC35-like splicing factor SCL30a, 30a kD | 4.00E-64 | 103.6 | 63.1 | 73.4 | R | KOG0118 | FOG: RRM domain | 8.00E-66 | 104.0 | 62.7 | 73.0 | - | - | - | - | - | Solyc01g005820.2.1 | 2KN4 | gi|303324701|pdb|2KN4|A Chain A, The Structure Of The Rrm Domain Of Sc35 | 2.00E-14 | 62.7 | 15.9 | 19.8 | Name=IPR012677;Note=Nucleotide-binding%2C alpha-beta plait |
| 6172_1047 | G | SL2.40ch01 | 568616 | exon | M | A | C | + | tcA | tcC | S | S | sSNP | Solyc01g005830.2.1 | # | CACTAGTATCGAAGTTATTATTGGCGTTACAAATGAAGAAGTCTTAGGGATTGGAGAATC[A/C]CCATCAACTGCAGCTGCTTGGGTAAATAGAAATGTAGCAGCTTACATGCCCGGAACAAAT | 0.23 | 0 | 0 | 0 | 0.28 | CC | AA | AA | AA | AA | AA | AA | CC | AA | AA | AC | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | CC | AA | AA | 6.20E-19 | Glyco_hydro_17 | Glycosyl hydrolases family 17 | gi|255582558|ref|XP_002532062.1| Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis]gi|223528266|gb|EEF30317.1| Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis] | Glucan endo-1,3-beta-glucosidase precursor, putative | 2.00E-44 | 163.3 | 36.0 | 43.4 | - | noCOG | 1.00E-41 | 189.1 | 27.7 | 33.0 | - | - | - | - | - | Solyc01g005830.2.1 | 2JON | gi|166235350|pdb|2JON|A Chain A, Solution Structure Of The C-Terminal Domain Ole E 9 | 6.00E-15 | 37.8 | 14.6 | 20.6 | Name=IPR013781;Note=Glycoside hydrolase%2C subgroup%2C catalytic core | ||||||||||||||
| solcap_snp_sl_24801 | I | SL2.40ch01 | 663658 | exon | R | A | G | + | Atg | Gtg | M | V | cSNP | Solyc01g006000.2.1 | # | CGCAATTCGTACAAAGTACACACTATCCCAAACAATGCTATCCTCGATCA[T/C]CGATGCCAACCGCGGGAGGAGAACCGGCGGCGAGTCGGATTTCGAGTAAG | 0.5 | 0 | 0 | 0.5 | 0.5 | CC | TT | TT | TT | CC | CC | TT | CC | CC | CC | CC | TT | CC | CC | TT | TT | TT | TT | CC | TT | TC | TC | TC | TT | TT | TT | TT | TT | TT | TT | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | 2.80E-135 | Mannosyl_trans2 | Mannosyltransferase (PIG-V)) | gi|42561929|ref|NP_172652.2| phosphatidylinositol glycan, class V [Arabidopsis thaliana]gi|46931244|gb|AAT06426.1| At1g11880 [Arabidopsis thaliana]gi|50897228|gb|AAT85753.1| At1g11880 [Arabidopsis thaliana]gi|332190687|gb|AEE28808.1| phosphatidylinositol glycan, class V [Arabidopsis thaliana] | phosphatidylinositol glycan, class V | 1.00E-162 | 95.1 | 55.8 | 73.7 | R | KOG2647 | Predicted Dolichyl-phosphate-mannose-protein mannosyltransferase | 1.00E-160 | 95.7 | 55.3 | 73.2 | K07542_vvi-100241567 | 1.00E-180 | 96.7 | 61.1 | 73.5 | Solyc01g006000.2.1 | - | - | - | - | - | - | Name=IPR007315;Note=Mannosyltransferase%2C PIG-V |
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