SL2.40ch01

[Graphical Genotypes] (1 / 27 page)

HMMscan nr KOG KEGG PDB ITAG2.3
SNP ID Array type
( I: Infinium
G: Goldengate)
Chromosome Position on the SL2.40 Location IUPAC SNP genotype (Heinz 1706-BG) SNP genotype (Mutation) Strand Codon (Heinz 1706-BG) Codon (Mutation) Amino acid residue (Heinz 1706-BG) Amino acid residue (Mutation) SNP category ITAG gene model Functional site Flanking sequences on SNP HZ (The 40 lines) HZ (cluster 1) HZ (cluster 2) HZ (cluster 3) HZ (cluster 4) San Marzano Rutgers Ponderosa Aichi First S. lycopersicum var cerasiforme (WIR25/30) S. lycopersicum var cerasiforme (TOMJPF00009) Earliana Best Of All Money Maker Ailsa Craig LA925 Fruit Rio Grande Marglobe Heinz 1706-BG Tomato Chuukanbohon Nou 9 Furikoma Tomato Chuukanbohon Nou 11 Reika Momotaro 8 Labell Matrix Geronimo Micro-Tom_AM Micro-Tom TGRC (LA3911) Micro-Tom_MM Micro-Tom Micro-Tom NBRP (TOMJPF00001) M82_MM M82 Regina Sweet100 S. pimpinellifolium (TOMJPF00012) S. pimpinellifolium (LS1513) S. pimpinellifolium (PI344102) S. chilense (LA1958) S. peruvianum (WIR2020) S. peruvianum (TOMJPF00010) S. pennellii (TOMJPF00008) S. pennellii (LA716) E-value Model HMMscan definition nr definition Product (KDRI) E-value Length% Identity% Positive% KOG id KOG No. KOG definition E-value Length% Identity% Positive% KO E-value Length% Identity% Positive% Gene name
[structural model (tomato)]
(Structures with links can be browsed by Jmol.)
PDB id PDB definition E-value Length% Identity% Positive% ITAG (interpro)
solcap_snp_sl_15058 I SL2.40ch01 45434 genome Y C T # # # # # gSNP # # ACAATATACTCAGTGTATTAGAAGTGTGGCCTGGAGAGGGTAGGATGTAC[A/G]CGACCTTACCTCTACCTTTGAAGGGTGGAGAGGTTGTTTCCGATAGACCC 0.5 0.3 0 0.18 0.47 GG GG GG GG GG GG GG AA AA AA AA GG AG AA GG AA GG GG AA AG AA AA AA AA AA AA AA AA AA AA AA AG GG GG GG GG AG AA GG GG - - - - - - - - - - - - - - - - - - - - - - - - - - - - #
solcap_snp_sl_60635 I SL2.40ch01 47132 exon R G A + ccG ccA P P sSNP Solyc01g005030.2.1 # TATCCACGTCCGATCCTATGTTTAAGTTTGATTGAAGCAGGATCAATGTA[T/C]GGACCGGCTGGGGCAGGTGCAGCAACAACAGTTCTAAGATGATCAGGATC 0.07 0.22 0 0 0 CC CC CC CC CC CC CC CC CC CC CC CC CC CC CC CC CC CC CC CC CC CC CC CC CC CC CC CC CC CC CC TC CC CC TT CC CC CC CC CC - - - gi|15226383|ref|NP_178306.1| putative endomembrane protein 70 [Arabidopsis thaliana]gi|4406780|gb|AAD20090.1| putative endosomal protein [Arabidopsis thaliana]gi|16604501|gb|AAL24256.1| At2g01970/F14H20.4 [Arabidopsis thaliana]gi|110741070|dbj|BAE98629.1| putative endosomal protein [Arabidopsis thaliana]gi|330250434|gb|AEC05528.1| putative endomembrane protein 70 [Arabidopsis thaliana] putative endomembrane protein 70 0 51.4 36.8 42.4 U KOG1277 Endosomal membrane proteins, EMP70 0 51.4 36.8 42.4 - - - - - Solyc01g005030.2.1 2R5T gi|198443065|pdb|2R5T|A Chain A, Crystal Structure Of Inactive Serum And Glucocorticoid- Regulated Kinase 1 In Complex With Amp-Pnpgi|242556642|pdb|3HDM|A Chain A, Crystal Structure Of Serum And Glucocorticoid-Regulated Kinase 1 In Complex With Compound 1gi|242556645|pdb|3HDN|A Chain A, Crystal Structure Of Serum And Glucocorticoid-Regulated Kinase 1 In Complex With Compound 2 9.00E-15 32.4 6.5 10.2 Name=IPR004240;Note=Nonaspanin (TM9SF)
solcap_snp_sl_60604 I SL2.40ch01 192109 exon K G T - atC atA I I sSNP Solyc01g005250.2.1 # ATCTTTGTTTGTGGTGATCAAATACGCAAAGGAGCCGCCCTTAATGCTAT[A/C]CAGATTGCAGAAATGTTGTTGTAGATTTGCGATATAGCACCCTTAAAGGT 0.18 0.38 0 0.42 0 CC CC CC CC CC CC CC CC CC CC CC CC CC CC CC CC CC CC AC CC AC CC AC CC CC CC CC CC CC CC CC AC CC AA AA CC CC CC CC CC - - - gi|302353426|gb|ADL27919.1| aspartate-semialdehyde dehydrogenase 2 [Glycine max] aspartate-semialdehyde dehydrogenase 2 1.00E-172 98.7 79.8 87.9 E KOG4777 Aspartate-semialdehyde dehydrogenase 1.00E-173 98.4 80.1 87.9 K00133_pop-POPTR_566429 1.00E-174 98.4 77.7 86.6 Solyc01g005250.2.1 2YV3 gi|158431281|pdb|2YV3|A Chain A, Crystal Structure Of Aspartate Semialdehyde Dehydrogenase From Thermus Thermophilus Hb8gi|158431282|pdb|2YV3|B Chain B, Crystal Structure Of Aspartate Semialdehyde Dehydrogenase From Thermus Thermophilus Hb8 6.00E-89 86.9 44.4 58.0 Name=IPR012080;Note=Aspartate-semialdehyde dehydrogenase
solcap_snp_sl_15056 I SL2.40ch01 259974 exon M C A + caC caA H Q cSNP Solyc01g005370.2.1 # TCCGAAAACGAGATTTTTCCGTCGCCGTTGATGTCAAATTTGTTGAATAC[T/G]TGTTGTAGCTCCTCTTCTATCATGACCGGAGTGTTCACCGGCGGGGAATT 0.32 0 0 0 0.48 TT GG GG GG TT TT GG TT TT TT TT GG TT TT GG TT GG GG TT TT TT TT TT TT TT TT TT TT TT TT TT TT TT TT TT TT TT TT TT TT 2.70E-31 efhand EF hand gi|255570063|ref|XP_002525994.1| Polcalcin Jun o, putative [Ricinus communis]gi|223534726|gb|EEF36418.1| Polcalcin Jun o, putative [Ricinus communis] Polcalcin Jun o, putative 8.00E-53 110.5 65.7 76.2 T KOG0027 Calmodulin and related proteins (EF-Hand superfamily) 1.00E-47 108.1 54.1 66.9 K13448_rcu-RCOM_0597990 2.00E-53 110.5 65.7 76.2 Solyc01g005370.2.1 2K0J gi|224983343|pdb|2K0J|A Chain A, Solution Structure Of Cam Complexed To Drp1pgi|229597554|pdb|2K61|A Chain A, Solution Structure Of Cam Complexed To Dapk Peptide 5.00E-28 86.0 37.2 51.2 Name=IPR018248;Note=EF-hand
solcap_snp_sl_15055 I SL2.40ch01 299550 exon R A G + Atg Gtg M V cSNP Solyc01g005430.2.1 # TGATCCATCTAATGGCTTTCCTGAAACATACACACTAACACATTCTTCCA[T/C]TCCACTCTTAACTTCTTCATCTTTATTTTCAACTCCCAAATCACTCACTT 0.36 0.22 0 0.18 0.48 CC TT TT TT CC CC TT CC CC CC CC TT CC CC TT CC TT TT CC TC CC CC CC CC CC CC CC CC CC CC CC CC TT CC CC CC CC CC CC CC - - - gi|255570041|ref|XP_002525983.1| nucleic acid binding protein, putative [Ricinus communis]gi|223534715|gb|EEF36407.1| nucleic acid binding protein, putative [Ricinus communis] nucleic acid binding protein, putative 1.00E-145 103.1 60.5 78.1 O KOG2699 Predicted ubiquitin regulatory protein 1.00E-149 102.0 62.7 77.6 K14011_ath-AT2G01650 1.00E-150 100.4 62.5 77.6 Solyc01g005430.2.1 - - - - - - Name=IPR006567;Note=PUG domain
solcap_snp_sl_15054 I SL2.40ch01 299696 exon R A G + gaA gaG E E sSNP Solyc01g005430.2.1 # AATCCAACAAATTCCAATAGCTCAACTCCTCCTACAACATCACCTATAGC[T/C]TCCTTTATCTTCGGATTCCCCATCCGTATCTTCCTAAACTTCGCATTCGT 0.45 0.47 0 0.48 0.48 CC TT TT TT CC CC TT CC CC CC CC TT CC CC TT CC TT TT TC TC TC CC TC CC CC CC CC CC CC CC CC TC TT TT TT CC CC CC CC CC 1.70E-18 PUB PUB domain gi|255570041|ref|XP_002525983.1| nucleic acid binding protein, putative [Ricinus communis]gi|223534715|gb|EEF36407.1| nucleic acid binding protein, putative [Ricinus communis] nucleic acid binding protein, putative 1.00E-145 103.1 60.5 78.1 O KOG2699 Predicted ubiquitin regulatory protein 1.00E-149 102.0 62.7 77.6 K14011_ath-AT2G01650 1.00E-150 100.4 62.5 77.6 Solyc01g005430.2.1 - - - - - - Name=IPR006567;Note=PUG domain
solcap_snp_sl_15052 I SL2.40ch01 301597 exon K T G + cgT cgG R R sSNP Solyc01g005430.2.1 # CGGATAATGGATCTGTTGTACTTCTTTCTTGCAGCTTTTGCCTGCTTTTC[A/C]CGAAAAGATTTAGGAATCAATAATTTCGACTCCTCTAGTTTCTTCCTCTT 0.45 0.47 0 0.48 0.48 CC AA AA AA CC CC AA CC CC CC CC AA CC CC AA CC AA AA AC AC AC CC AC CC CC CC CC CC CC CC CC AC AA AA AA CC CC CC CC CC - - - gi|255570041|ref|XP_002525983.1| nucleic acid binding protein, putative [Ricinus communis]gi|223534715|gb|EEF36407.1| nucleic acid binding protein, putative [Ricinus communis] nucleic acid binding protein, putative 1.00E-145 103.1 60.5 78.1 O KOG2699 Predicted ubiquitin regulatory protein 1.00E-149 102.0 62.7 77.6 K14011_ath-AT2G01650 1.00E-150 100.4 62.5 77.6 Solyc01g005430.2.1 - - - - - - Name=IPR006567;Note=PUG domain
solcap_snp_sl_15051 I SL2.40ch01 301603 exon R G A + aaG aaA K K sSNP Solyc01g005430.2.1 # TGAATTCGGATAATGGATCTGTTGTACTTCTTTCTTGCAGCTTTTGCCTG[T/C]TTTTCACGAAAAGATTTAGGAATCAATAATTTCGACTCCTCTAGTTTCTT 0.5 0 0 0.48 0.48 TT CC CC CC TT TT CC TT TT TT TT CC TT TT CC TT CC CC TC TC TC TT TC TT TT TT TT TT TT TT TT TC CC CC CC CC CC CC CC CC - - - gi|255570041|ref|XP_002525983.1| nucleic acid binding protein, putative [Ricinus communis]gi|223534715|gb|EEF36407.1| nucleic acid binding protein, putative [Ricinus communis] nucleic acid binding protein, putative 1.00E-145 103.1 60.5 78.1 O KOG2699 Predicted ubiquitin regulatory protein 1.00E-149 102.0 62.7 77.6 K14011_ath-AT2G01650 1.00E-150 100.4 62.5 77.6 Solyc01g005430.2.1 - - - - - - Name=IPR006567;Note=PUG domain
solcap_snp_sl_15050 I SL2.40ch01 303076 exon R G A + ccG ccA P P sSNP Solyc01g005430.2.1 # CTCTCCCCGGTAGCTGGAAAATGGGGTATCACCCGCCTCTTGACAAGCAC[T/C]GGATGTAACAAATCAAACTCTAAGCTTGGTTCCTTTAACGCCGAGCTCAC 0.5 0 0 0.48 0.48 TT CC CC CC TT TT CC TT TT TT TT CC TT TT CC TT CC CC TC TC TC TT TC TT TT TT TT TT TT TT TT TC CC CC CC CC CC CC CC CC 4.00E-07 UBX UBX domain gi|255570041|ref|XP_002525983.1| nucleic acid binding protein, putative [Ricinus communis]gi|223534715|gb|EEF36407.1| nucleic acid binding protein, putative [Ricinus communis] nucleic acid binding protein, putative 1.00E-145 103.1 60.5 78.1 O KOG2699 Predicted ubiquitin regulatory protein 1.00E-149 102.0 62.7 77.6 K14011_ath-AT2G01650 1.00E-150 100.4 62.5 77.6 Solyc01g005430.2.1 - - - - - - Name=IPR006567;Note=PUG domain
solcap_snp_sl_15049 I SL2.40ch01 303202 exon Y C T + gtC gtT V V sSNP Solyc01g005430.2.1 # TCGAGTGGCTCGCTGATTTCAAGAAGTTCATTGCAAAGACCTGTAAAAAC[A/G]ACGGAATCTGTTTCTATAGGTTTAAATTTGAGTAGAGCTGAAGGAATCAA 0.49 0.22 0 0.48 0.48 AA GG GG GG AA AA GG AA AA AA AA GG AA AA GG AA GG GG AG AG AG AA AG AA AA AA AA AA AA AA AA AG AA GG GG GG GG GG GG GG - - - gi|255570041|ref|XP_002525983.1| nucleic acid binding protein, putative [Ricinus communis]gi|223534715|gb|EEF36407.1| nucleic acid binding protein, putative [Ricinus communis] nucleic acid binding protein, putative 1.00E-145 103.1 60.5 78.1 O KOG2699 Predicted ubiquitin regulatory protein 1.00E-149 102.0 62.7 77.6 K14011_ath-AT2G01650 1.00E-150 100.4 62.5 77.6 Solyc01g005430.2.1 - - - - - - Name=IPR006567;Note=PUG domain
CL004303-0524 I SL2.40ch01 310894 exon R A G + ggA ggG G G sSNP Solyc01g005440.2.1 # AGACTCATTTTGGTGGTATTGGCCAGATGAAGCAAGTTCTTGGTGGAATTCCTGTTACAGCTCCTCATTCAATGCTTCCATCGCGTGGCTCTGTGGCTGG[A/G]ACAACCGAACCTTGNNAAGTTCACCATTTTGTGCACANAAAACTGCGTAGATTGTGTTAGAGGAGTCGTATTTGGTAGGTATAATGGCACATCNATNTGC 0.38 0 0 0.42 0 AA AA AA AA AA AA AA AA AA AA AA AA AA AA AA AA AA AA AG AA AG AA AG AA AA AA AA AA AA AA AA AG GG GG GG GG GG GG GG GG - - - gi|350539077|ref|NP_001234373.1| jasmonate ZIM-domain protein 3 [Solanum lycopersicum]gi|164472579|gb|ABY58971.1| jasmonate ZIM-domain protein 3 [Solanum lycopersicum] jasmonate ZIM-domain protein 3 1.00E-175 99.0 98.7 99.0 - noCOG 2.00E-33 113.9 38.2 52.4 K13464_vvi-100262965 6.00E-65 125.6 42.7 54.0 Solyc01g005440.2.1 - - - - - - Name=IPR018467;Note=CCT domain-like
solcap_snp_sl_24809 I SL2.40ch01 324852 5utr R A G - # # # # rSNP Solyc01g005470.2.1 # TTCATTTCATTTTCTCTCTAAAAAAAATTCTTATTAAGTTTTTAAGTTAC[T/C]ATGAACCCCTCAGCTCAACCAGCTTACGGTGAAAAACCTATGACTGGTGT 0.5 0 0 0.48 0.47 CC TT TT TT CC CC TT TT TT CC CC TT TC TT TT CC TT TT TC TC TC TT TC TT TT TT TT TT CC CC CC CC CC CC CC CC CC CC CC CC - - - - - - - - - - noCOG 6.00E-51 92.7 57.3 66.5 - - - - - Solyc01g005470.2.1 - - - - - - Name=IPR006461;Note=Uncharacterised protein family Cys-rich
CL016197-0363_solcap_snp_sl_60559 I SL2.40ch01 336495 exon Y T C + Ttg Ctg L L sSNP Solyc01g005480.2.1 # TGTTTCTAAGTGATTGTGGAGGAAAAAGATACCCTTTGTTGCAACATCCA[A/G]TTGCGCCAGATGGACCAGTTCTTTTTTTGCCATTTTTGAAGGGATGCAAG 0.35 0.22 0 0.42 0 AA AA AA AA AA AA AA AA AA AA AA AA AA AA AA AA AA AA AG AA AG AA AG AA AA AA AA AA AA AA AA AG AA GG GG GG GG GG GG GG 2.40E-14 DUF677 Protein of unknown function (DUF677) - - - - - - - noCOG 1.00E-61 88.8 36.2 55.3 - - - - - Solyc01g005480.2.1 - - - - - - Name=IPR007749;Note=Protein of unknown function DUF677
solcap_snp_sl_60557 I SL2.40ch01 338651 exon Y C T - Ggt Agt G S cSNP Solyc01g005490.2.1 predicted TCTCTGTTGCATTTGTAGATGGTGGTGAGGCTGGAAATGTAATCCCTGAA[A/G]GTGTGAAGTTTGGTGGAACATTCCGGTTCTTGACGTTTGAGGGTCATTCC 0.35 0.22 0 0.42 0 GG GG GG GG GG GG GG GG GG GG GG GG GG GG GG GG GG GG AG GG AG GG AG GG GG GG GG GG GG GG GG AG GG AA AA AA AA AA AA AA 9.30E-30 Peptidase_M20 Peptidase family M20/M25/M40 gi|224138406|ref|XP_002322806.1| iaa-amino acid hydrolase 4 [Populus trichocarpa]gi|222867436|gb|EEF04567.1| iaa-amino acid hydrolase 4 [Populus trichocarpa] iaa-amino acid hydrolase 4 1.00E-165 108.9 63.8 78.6 - noCOG 1.00E-136 100.7 52.8 68.6 K14664_pop-POPTR_825192 1.00E-165 108.9 63.8 78.6
1XMB gi|56554606|pdb|1XMB|A Chain A, X-Ray Structure Of Iaa-Aminoacid Hydrolase From Arabidopsis Thaliana Gene At5g56660gi|150261472|pdb|2Q43|A Chain A, Ensemble Refinement Of The Protein Crystal Structure Of Iaa-Aminoacid Hydrolase From Arabidopsis Thaliana Gene At5g56660 1.00E-123 95.2 49.2 65.8 Name=IPR017439;Note=Peptidase M20D%2C mername-AA028/carboxypeptidase Ss1
solcap_snp_sl_15046 I SL2.40ch01 348201 exon R G A - taC taT Y Y sSNP Solyc01g005510.2.1 # GGTGAGAAAGTTGCGGAGCCACTATACAAGATGGAGGCTGGTAAGACGTA[T/C]AGGTATAGATTTTGCAATGTAGGTATGAGGACATCAGTGAATGTTAGGAT 0.5 0 0 0.42 0.33 CC CC CC CC CC CC CC TT TT CC CC CC TC TT CC CC CC CC TC CC TT TT TT TT TT TT TT TT CC CC CC TC TT TT TT TT TT TT TT TT 2.90E-38 Cu-oxidase_3 Multicopper oxidase gi|37223175|gb|AAQ90183.1| ntp201 [Nicotiana tabacum] ntp201 0 100.4 91.6 96.4 Q KOG1263 Multicopper oxidases 0 99.6 65.5 78.8 K00423_ath-AT1G55570 0 99.6 65.5 78.8 Solyc01g005510.2.1 1AOZ gi|442635|pdb|1AOZ|A Chain A, Refined Crystal Structure Of Ascorbate Oxidase At 1.9 Angstroms Resolutiongi|442636|pdb|1AOZ|B Chain B, Refined Crystal Structure Of Ascorbate Oxidase At 1.9 Angstroms Resolutiongi|493837|pdb|1ASO|A Chain A, X-Ray Structures And Mechanistic Implications Of Three Functional Derivatives Of Ascorbate Oxidase From Zucchini: Reduced-, Peroxide-, And Azide-Formsgi|493838|pdb|1ASO|B Chain B, X-Ray Structures And Mechanistic Implications Of Three Functional Derivatives Of Ascorbate Oxidase From Zucchini: Reduced-, Peroxide-, And Azide-Formsgi|493839|pdb|1ASP|A Chain A, X-Ray Structures And Mechanistic Implications Of Three Functional Derivatives Of Ascorbate Oxidase From Zucchini: Reduced-, Peroxide-, And Azide-Formsgi|493840|pdb|1ASP|B Chain B, X-Ray Structures And Mechanistic Implications Of Three Functional Derivatives Of Ascorbate Oxidase From Zucchini: Reduced-, Peroxide-, And Azide-Formsgi|493841|pdb|1ASQ|A Chain A, X-Ray Structures And Mechanistic Implications Of Three Functional Derivatives Of Ascorbate Oxidase From Zucchini: Reduced-, Peroxide-, And Azide-Formsgi|493842|pdb|1ASQ|B Chain B, X-Ray Structures And Mechanistic Implications Of Three Functional Derivatives Of Ascorbate Oxidase From Zucchini: Reduced-, Peroxide-, And Azide-Forms 3.00E-47 99.1 25.5 45.4 Name=IPR001117;Note=Multicopper oxidase%2C type 1
solcap_snp_sl_15039 I SL2.40ch01 482660 exon Y T C - Att Gtt I V cSNP Solyc01g005700.2.1 # TAAGTGCTGGCGTCGAGAAGAAATCTCAAAATGTATCCATTAGGAAATTT[A/G]TTGATTCTCATTCACATCCTCCTCTAGATTCATCGCAACTGAAACCTCGT 0.49 0 0 0.42 0.44 AA AA AA AA GG GG AA GG GG AA AA AA AG GG AA AA AA AA AG AA GG GG GG AA AA AA AA AA AA AA AA AG GG GG GG GG GG GG GG GG - - - - - - - - - - noCOG 2.00E-85 81.2 24.4 42.0 - - - - - Solyc01g005700.2.1 - - - - - - Name=IPR001878;Note=Zinc finger%2C CCHC-type
solcap_snp_sl_33745 I SL2.40ch01 534448 3utr M A C + # # # # uSNP Solyc01g005810.2.1 # TTTGTTCTATCTCTTCGCGTAACATTTGTGTCCAACGAAATCTTTTTGCC[T/G]CGCCACTTAAAAAGCCAAGCTATCATTGTACTGTTGTCTGTCTTGCGCTT 0.5 0.22 0 0.42 0.5 GG TT TT TT GG GG TT GG GG GG TT TT GG GG TT TT TT TT TG TT TG TT TG TT TT TT TT TT TT TT GG TG GG GG GG TT GG GG GG GG - - - gi|255589586|ref|XP_002535013.1| maintenance of killer 16 (mak16) protein, putative [Ricinus communis]gi|223524194|gb|EEF27371.1| maintenance of killer 16 (mak16) protein, putative [Ricinus communis] maintenance of killer 16 (mak16) protein, putative 1.00E-105 100.7 73.2 80.8 A KOG3064 RNA-binding nuclear protein (MAK16) containing a distinct C4 Zn-finger 7.00E-96 100.3 65.9 78.8 K14831_vvi-100267396 1.00E-106 98.0 73.2 81.8 Solyc01g005810.2.1 - - - - - - Name=IPR006958;Note=Mak16 protein
solcap_snp_sl_60513 I SL2.40ch01 541692 3utr R G A + # # # # uSNP Solyc01g005820.2.1 # GCTTGTCTCTACTAATAAACTTATTTCCTTGTCTGTTTTAACTCCTTAAA[T/C]GAGACAAACTAAAATGCATCCATTTTCCCATGCATACACGAAGCACATGA 0.5 0 0 0.48 0.5 TT CC CC CC TT TT CC TT TT TT TT CC TT TT CC CC CC CC TT CC TC CC TC CC CC CC CC CC CC CC TT TT TT TT TT TT TT TT TT TT - - - gi|9843661|emb|CAC03604.1| SC35-like splicing factor SCL30a, 30a kD [Arabidopsis thaliana] SC35-like splicing factor SCL30a, 30a kD 4.00E-64 103.6 63.1 73.4 R KOG0118 FOG: RRM domain 8.00E-66 104.0 62.7 73.0 - - - - - Solyc01g005820.2.1 2KN4 gi|303324701|pdb|2KN4|A Chain A, The Structure Of The Rrm Domain Of Sc35 2.00E-14 62.7 15.9 19.8 Name=IPR012677;Note=Nucleotide-binding%2C alpha-beta plait
6172_1047 G SL2.40ch01 568616 exon M A C + tcA tcC S S sSNP Solyc01g005830.2.1 # CACTAGTATCGAAGTTATTATTGGCGTTACAAATGAAGAAGTCTTAGGGATTGGAGAATC[A/C]CCATCAACTGCAGCTGCTTGGGTAAATAGAAATGTAGCAGCTTACATGCCCGGAACAAAT 0.23 0 0 0 0.28 CC AA AA AA AA AA AA CC AA AA AC AA AA AA AA AA AA AA AA AA AA AA AA AA CC AA AA 6.20E-19 Glyco_hydro_17 Glycosyl hydrolases family 17 gi|255582558|ref|XP_002532062.1| Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis]gi|223528266|gb|EEF30317.1| Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis] Glucan endo-1,3-beta-glucosidase precursor, putative 2.00E-44 163.3 36.0 43.4 - noCOG 1.00E-41 189.1 27.7 33.0 - - - - - Solyc01g005830.2.1 2JON gi|166235350|pdb|2JON|A Chain A, Solution Structure Of The C-Terminal Domain Ole E 9 6.00E-15 37.8 14.6 20.6 Name=IPR013781;Note=Glycoside hydrolase%2C subgroup%2C catalytic core
solcap_snp_sl_24801 I SL2.40ch01 663658 exon R A G + Atg Gtg M V cSNP Solyc01g006000.2.1 # CGCAATTCGTACAAAGTACACACTATCCCAAACAATGCTATCCTCGATCA[T/C]CGATGCCAACCGCGGGAGGAGAACCGGCGGCGAGTCGGATTTCGAGTAAG 0.5 0 0 0.5 0.5 CC TT TT TT CC CC TT CC CC CC CC TT CC CC TT TT TT TT CC TT TC TC TC TT TT TT TT TT TT TT CC CC CC CC CC CC CC CC CC CC 2.80E-135 Mannosyl_trans2 Mannosyltransferase (PIG-V)) gi|42561929|ref|NP_172652.2| phosphatidylinositol glycan, class V [Arabidopsis thaliana]gi|46931244|gb|AAT06426.1| At1g11880 [Arabidopsis thaliana]gi|50897228|gb|AAT85753.1| At1g11880 [Arabidopsis thaliana]gi|332190687|gb|AEE28808.1| phosphatidylinositol glycan, class V [Arabidopsis thaliana] phosphatidylinositol glycan, class V 1.00E-162 95.1 55.8 73.7 R KOG2647 Predicted Dolichyl-phosphate-mannose-protein mannosyltransferase 1.00E-160 95.7 55.3 73.2 K07542_vvi-100241567 1.00E-180 96.7 61.1 73.5 Solyc01g006000.2.1 - - - - - - Name=IPR007315;Note=Mannosyltransferase%2C PIG-V
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