| HMMscan | nr | KOG | KEGG | PDB | ITAG2.3 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| SNP ID | Array type ( I: Infinium G: Goldengate) |
Chromosome | Position on the SL2.40 | Location | IUPAC | SNP genotype (Heinz 1706-BG) | SNP genotype (Mutation) | Strand | Codon (Heinz 1706-BG) | Codon (Mutation) | Amino acid residue (Heinz 1706-BG) | Amino acid residue (Mutation) | SNP category | ITAG gene model | Functional site | Flanking sequences on SNP | HZ (The 40 lines) | HZ (cluster 1) | HZ (cluster 2) | HZ (cluster 3) | HZ (cluster 4) | San Marzano | Rutgers | Ponderosa | Aichi First | S. lycopersicum var cerasiforme (WIR25/30) | S. lycopersicum var cerasiforme (TOMJPF00009) | Earliana | Best Of All | Money Maker | Ailsa Craig | LA925 | Fruit | Rio Grande | Marglobe | Heinz 1706-BG | Tomato Chuukanbohon Nou 9 | Furikoma | Tomato Chuukanbohon Nou 11 | Reika | Momotaro 8 | Labell | Matrix | Geronimo | Micro-Tom_AM | Micro-Tom TGRC (LA3911) | Micro-Tom_MM | Micro-Tom | Micro-Tom NBRP (TOMJPF00001) | M82_MM | M82 | Regina | Sweet100 | S. pimpinellifolium (TOMJPF00012) | S. pimpinellifolium (LS1513) | S. pimpinellifolium (PI344102) | S. chilense (LA1958) | S. peruvianum (WIR2020) | S. peruvianum (TOMJPF00010) | S. pennellii (TOMJPF00008) | S. pennellii (LA716) | E-value | Model | HMMscan definition | nr definition | Product (KDRI) | E-value | Length% | Identity% | Positive% | KOG id | KOG No. | KOG definition | E-value | Length% | Identity% | Positive% | KO | E-value | Length% | Identity% | Positive% | Gene name [structural model (tomato)] (Structures with links can be browsed by Jmol.) |
PDB id | PDB definition | E-value | Length% | Identity% | Positive% | ITAG (interpro) |
| 17708_443 | G | SL2.40ch03 | 53622 | 3utr | W | A | T | - | # | # | # | # | uSNP | Solyc03g005070.1.1 | # | TTAATTTACACACCTGTTATGGTAGCTGTTAGTGTTACCAATAGATGTTGGTGAATTTTT[A/T]GCCGATTTTCTTTCCTTGCTTTTACATCATACTCAAGGTGACCAGTCACTTTCCCTTTAA | 0.14 | 0 | 0 | 0 | 0 | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | AA | TT | AA | - | - | - | No_hits | - | - | - | - | - | - | - | - | - | - | - | - | - | - | Solyc03g005070.1.1 | - | No_hits | - | - | - | - | # | ||||||||||||||||
| 6069_886 | G | SL2.40ch03 | 55895 | exon | S | G | C | - | gCg | gGg | A | G | cSNP | Solyc03g005080.2.1 | # | ATGAACTTAGGCTAAACTCTAGAGTTCTGGAATTATCTTGTAGCTGTAGTGGGGACTCTG[C/G]GATAGATAGCTGGTCAATTTTTTCTGCCTCTCCACACAAGCGGCAAGCAGAAGAAGAATC | 0.17 | 0 | 0 | 0 | 0 | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | GG | GG | CC | CC | GC | CC | 6.30E-56 | Amino_oxidase | Flavin containing amine oxidoreductase | gi|3914403|sp|O24164.1|PPOM_TOBAC RecName: Full=Protoporphyrinogen oxidase, mitochondrial; AltName: Full=PX-2; AltName: Full=Protoporphyrinogen IX oxidase isozyme II; Short=PPO II; Short=PPX IIgi|2370335|emb|CAA73866.1| protoporphyrinogen oxidase [Nicotiana tabacum]gi|3929920|dbj|BAA34712.1| mitochondrial protoporphyrinogen oxidase [Nicotiana tabacum]gi|4105188|gb|AAD02291.1| protoporphyrinogen oxidase PX-2 [Nicotiana tabacum] | RecName: Full=Protoporphyrinogen oxidase, mitochondrial; AltName: Full=PX-2; AltName: Full=Protoporphyrinogen IX oxidase isozyme II; Short=PPO II; Short=PPX IIgi|2370335|emb|CAA73866.1| protoporphyrinogen oxidase | 0 | 100.6 | 91.8 | 96.8 | H | KOG1276 | Protoporphyrinogen oxidase | 0 | 100.6 | 65.9 | 78.2 | K00231_vvi-100254398 | 0 | 101.4 | 72.1 | 83.4 | Solyc03g005080.2.1 | 1SEZ | gi|48425678|pdb|1SEZ|A Chain A, Crystal Structure Of Protoporphyrinogen Ix Oxidasegi|48425679|pdb|1SEZ|B Chain B, Crystal Structure Of Protoporphyrinogen Ix Oxidase | 0 | 100.6 | 90.0 | 95.0 | Name=IPR004572;Note=Protoporphyrinogen oxidase | |||||||||||||
| 10431_124 | G | SL2.40ch03 | 70736 | 5utr | R | A | G | + | # | # | # | # | rSNP | Solyc03g005100.2.1 | # | AGAACAGAAAAAGAAATTAAAAATTGGATCTTTTTCTCCAATTGAATCAAGAAATCTCTA[A/G]TACCTTTCCCTTAATCACAATCCATCTTCTTAATCCTTAAACCCTAAACTATCTCTTCAT | 0.17 | 0 | 0 | 0 | 0 | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | GG | GG | AA | AA | AG | AA | - | - | - | gi|82697975|gb|ABB89022.1| CXE carboxylesterase [Actinidia deliciosa] | CXE carboxylesterase | 0 | 99.1 | 78.5 | 85.7 | V | KOG1515 | Arylacetamide deacetylase | 0 | 101.1 | 73.4 | 81.8 | - | - | - | - | - | Solyc03g005100.2.1 | 2ZSH | gi|215261125|pdb|2ZSH|A Chain A, Structural Basis Of Gibberellin(Ga3)-Induced Della Recognition By The Gibberellin Receptorgi|215261127|pdb|2ZSI|A Chain A, Structural Basis Of Gibberellin(Ga4)-Induced Della Recognition By The Gibberellin Receptor | 7.00E-31 | 77.1 | 20.7 | 27.7 | Name=IPR013094;Note=Alpha/beta hydrolase fold-3 | |||||||||||||
| solcap_snp_sl_63048 | I | SL2.40ch03 | 71076 | exon | R | A | G | + | Ata | Gta | I | V | cSNP | Solyc03g005100.2.1 | # | CTGCTTCCAATCCTTTATTCACTGATGGTGTTGCAACCAAAGATTTACAT[A/G]TAGATCCAGGGACTTCTGTTTCTATTAGGATCTTTCTCCCTGAAACTTGT | 0.46 | 0 | 0 | 0 | 0 | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | GG | GG | GG | GG | GG | AA | AA | GG | AG | GG | GG | GG | GG | GG | GG | GG | GG | - | - | - | gi|82697975|gb|ABB89022.1| CXE carboxylesterase [Actinidia deliciosa] | CXE carboxylesterase | 0 | 99.1 | 78.5 | 85.7 | V | KOG1515 | Arylacetamide deacetylase | 0 | 101.1 | 73.4 | 81.8 | - | - | - | - | - | Solyc03g005100.2.1 | 2ZSH | gi|215261125|pdb|2ZSH|A Chain A, Structural Basis Of Gibberellin(Ga3)-Induced Della Recognition By The Gibberellin Receptorgi|215261127|pdb|2ZSI|A Chain A, Structural Basis Of Gibberellin(Ga4)-Induced Della Recognition By The Gibberellin Receptor | 7.00E-31 | 77.1 | 20.7 | 27.7 | Name=IPR013094;Note=Alpha/beta hydrolase fold-3 |
| CL016802-0675 | I | SL2.40ch03 | 119273 | intron | R | A | G | - | # | # | # | # | iSNP | Solyc03g005200.2.1 | # | AGAACAATGGAACTAAAAACTTGCTAAACNTAGAAACGAGACATTCTTTTTGAAACAGACGGAGAAAANGTACGACCATAGAAATTTTACGTTAC[T/C]TGTGAATTTGATTGTTCACTAAAATTACTTACCTATAACAGCTGGATCCCCAACTAGCTCTCCTGCTGGAACACCAAGTTCTCCAAATACAGNAGGTTCA | 0.33 | 0.38 | 0 | 0 | 0 | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | CC | CC | CC | CC | CC | TT | TT | CC | TC | TT | CC | CC | TT | TT | TT | TT | TT | - | - | - | - | - | - | - | - | - | - | noCOG | 1.00E-32 | 99.4 | 50.3 | 61.4 | - | - | - | - | - | Solyc03g005200.2.1 | - | - | - | - | - | - | Name=IPR013770;Note=Plant lipid transfer protein/hydrophobic protein%2C helical domain | |
| 6004_814 | G | SL2.40ch03 | 168371 | exon | R | G | A | - | agC | agT | S | S | sSNP | Solyc03g005300.2.1 | # | GAGGACATCATGGGCAACTTACTATCGCGGAACTCATGCTGTCATTGTAGTTATCGATAG[T/C]AGTGACAGAGCCCGTATTTCCACAATGAAAGACGAGCTGTTCAGGTTGCTCCCACACGAG | 0.07 | 0 | 0 | 0 | 0 | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | TT | CC | CC | 1.80E-05 | G-alpha | G-protein alpha subunit | gi|255552001|ref|XP_002517045.1| ADP-ribosylation factor, putative [Ricinus communis]gi|223543680|gb|EEF45208.1| ADP-ribosylation factor, putative [Ricinus communis] | ADP-ribosylation factor, putative | 3.00E-95 | 100.0 | 89.6 | 96.2 | U | KOG0070 | GTP-binding ADP-ribosylation factor Arf1 | 8.00E-95 | 100.0 | 89.1 | 95.1 | K07977_ath-AT3G22950 | 1.00E-93 | 100.0 | 89.1 | 95.1 | Solyc03g005300.2.1 | 1ZJ6 | gi|71042331|pdb|1ZJ6|A Chain A, Crystal Structure Of Human Arl5 | 2.00E-59 | 102.2 | 56.3 | 73.8 | Name=IPR006689;Note=ARF/SAR superfamily | |||||||||||||
| CL017202-0450_solcap_snp_sl_63109 | I | SL2.40ch03 | 304215 | exon | Y | T | C | - | Atg | Gtg | M | V | cSNP | Solyc03g005430.2.1 | # | GTCCATATGATGATGCCCACTATTGAGTCGAGGGTCGGTCTGCATAATCA[T/C]ATCACTTGCACTATCAAAAAGGCCTCCAGAATAGTTATGCTGGAACACGT | 0.33 | 0.38 | 0 | 0 | 0 | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | CC | CC | CC | CC | CC | TT | TT | CC | TC | TT | CC | CC | TT | TT | TT | TT | TT | - | - | - | - | - | - | - | - | - | - | noCOG | 0 | 94.2 | 50.4 | 63.4 | - | - | - | - | - | Solyc03g005430.2.1 | - | - | - | - | - | - | Name=IPR013322;Note=TRAF-type | |
| CL017080-0343 | I | SL2.40ch03 | 305385 | exon | Y | C | T | - | Gag | Aag | E | K | cSNP | Solyc03g005430.2.1 | # | TAGGTACGAGTTCATTCTATTTTCTTACTCTGAGCAGGAAGTAGTAGCTTCGCCGCAGAGGAAGTCAAGGAAGGCTGACACAGAGAGACCTTCCAAGGAG[A/G]AGTCAAGTGTCCAGTCTTCTCCCAGAAGCCCTCCAAAAGTTGCAGGCTCTGATGTTCAGCAAAAGTCACAGATGAAGATTCCAGTCACAAGTGATCNTAT | 0.22 | 0.47 | 0 | 0 | 0 | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | AA | AA | AA | AA | AA | - | - | - | - | - | - | - | - | - | - | noCOG | 0 | 94.2 | 50.4 | 63.4 | - | - | - | - | - | Solyc03g005430.2.1 | - | - | - | - | - | - | Name=IPR013322;Note=TRAF-type | |
| CL017080-0223 | I | SL2.40ch03 | 305505 | intron | R | A | G | - | # | # | # | # | iSNP | Solyc03g005430.2.1 | # | ATTACTATACTGAAAATTGTAGTGAACTGCCTCTATTTGTTAAGATGCATCTACCTATCCGATTATGAGTTTATAGGAAATTTCTTTTCCATAGATGCTA[T/C]GTTTCTGTTGGTGTTCCAGTAGGTACGAGTTCATTCTATTTTCTTACTCTGAGCAGGAAGTAGTAGCTTCGCCGCAGAGGAAGTCAAGGAAGGCTGACAC | 0.33 | 0.38 | 0 | 0 | 0 | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | CC | CC | CC | CC | CC | TT | TT | CC | TC | TT | CC | CC | TT | TT | TT | TT | TT | - | - | - | - | - | - | - | - | - | - | noCOG | 0 | 94.2 | 50.4 | 63.4 | - | - | - | - | - | Solyc03g005430.2.1 | - | - | - | - | - | - | Name=IPR013322;Note=TRAF-type | |
| solcap_snp_sl_63114 | I | SL2.40ch03 | 334009 | 3utr | R | A | G | + | # | # | # | # | uSNP | Solyc03g005440.2.1 | # | CTACGTGTATTGCTCATTCCGTGCAGGTTTTATACACCTTCCATAGTTTA[A/G]GAAGCTGCTTGACGTGAAATTTGGATGCATCCCATGTTAAGGTTTCAAGT | 0.42 | 0.43 | 0 | 0 | 0 | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | GG | GG | GG | GG | GG | AA | AA | GG | AG | AA | GG | GG | GG | AG | AA | GG | GG | - | - | - | - | - | - | - | - | - | - | noCOG | 1.00E-39 | 79.9 | 24.7 | 31.8 | - | - | - | - | - | Solyc03g005440.2.1 | - | - | - | - | - | - | Name=IPR002052;Note=DNA methylase%2C N-6 adenine-specific%2C conserved site | |
| CL016925-0828 | I | SL2.40ch03 | 346009 | exon | M | A | C | + | tcA | tcC | S | S | sSNP | Solyc03g005450.2.1 | # | ACTTAAATAAAAACTTCGAGATAGACTTTGATAGTAACTATATTATATTTTCACAGGTCTCAAGTCCATGGTTCTTTGTATATTCTTTTCTTTTCTTGTC[A/C]TCACTTTCAAAATACTTGTGGGATGTTGTGAACACTGGAGGGACAATGAGAACATGGTGGAATGAATGGAGGGTATGGATGATAAAATCAATAACAGCTT | 0.3 | 0.22 | 0 | 0 | 0 | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | CC | CC | CC | CC | CC | AA | AA | CC | AC | AA | CC | AA | AA | AA | AA | AA | AA | 3.60E-139 | Cellulose_synt | Cellulose synthase | gi|255576868|ref|XP_002529320.1| cellulose synthase, putative [Ricinus communis]gi|223531244|gb|EEF33089.1| cellulose synthase, putative [Ricinus communis] | cellulose synthase, putative | 0 | 96.1 | 54.9 | 72.6 | - | noCOG | 1.00E-129 | 92.7 | 35.1 | 55.4 | K10999_vvi-100248512 | 1.00E-111 | 138.5 | 34.9 | 55.7 | Solyc03g005450.2.1 | - | - | - | - | - | - | Name=IPR005150;Note=Cellulose synthase | |
| 3351_2089 | G | SL2.40ch03 | 346320 | exon | K | T | G | + | gTg | gGg | V | G | cSNP | Solyc03g005450.2.1 | # | CTTTGGTTACATTAGTCATATTGAATATGATTTCCTTCACTTGGGGAGTTATTGGAAAAG[T/G]GATTCTAGAAGGGAGATTGAGTGATTTGTTTGGTCAAGTGTTCCTCTCATTTT | 0.17 | 0 | 0 | 0 | 0 | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | GG | GG | TT | TT | GT | TT | 3.60E-139 | Cellulose_synt | Cellulose synthase | gi|255576868|ref|XP_002529320.1| cellulose synthase, putative [Ricinus communis]gi|223531244|gb|EEF33089.1| cellulose synthase, putative [Ricinus communis] | cellulose synthase, putative | 0 | 96.1 | 54.9 | 72.6 | - | noCOG | 1.00E-129 | 92.7 | 35.1 | 55.4 | K10999_vvi-100248512 | 1.00E-111 | 138.5 | 34.9 | 55.7 | Solyc03g005450.2.1 | - | - | - | - | - | - | Name=IPR005150;Note=Cellulose synthase | ||||||||||||||
| solcap_snp_sl_63129 | I | SL2.40ch03 | 473207 | exon | R | G | A | + | ccG | ccA | P | P | sSNP | Solyc03g005660.2.1 | # | TTCTCCTCTCGGAACATTGCGATGTCCCCATATGAGTTAGAGACAATCCC[A/G]AAATCCTTTCCACTACTGAGGGTTCTTGACATTGAGTCCATATTATTTGA | 0.31 | 0.24 | 0 | 0 | 0 | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | AA | AA | AA | AA | AA | GG | GG | AA | AG | GG | -- | AA | GG | GG | GG | GG | GG | - | - | - | gi|350535589|ref|NP_001234202.1| NRC1 [Solanum lycopersicum]gi|83630761|gb|ABC26878.1| NRC1 [Solanum lycopersicum] | NRC1 | 0 | 102.5 | 50.3 | 69.1 | T | KOG4658 | Apoptotic ATPase | 5.00E-64 | 104.6 | 27.9 | 47.9 | K13457_pop-POPTR_755797 | 1.00E-74 | 106.2 | 30.1 | 48.8 | Solyc03g005660.2.1 | - | - | - | - | - | - | Dbxref=PRINTS:PR00364;Name=Solyc03g005660.1.1-PR00364-3;Note=DISEASERSIST;database=PRINTS;length=17 |
| solcap_snp_sl_63134 | I | SL2.40ch03 | 473756 | exon | R | A | G | + | tcA | tcG | S | S | sSNP | Solyc03g005660.2.1 | # | GATTCAGAAAATTATGGATTCCCTCGGAGGTTAAAGCAGTTAACTTTATC[A/G]GGTACGTGGTTGGATTGGGAGGAGATACACAGAGCAGTTGGCCATTTGGA | 0.31 | 0.24 | 0 | 0 | 0 | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | GG | GG | GG | GG | GG | AA | AA | GG | AG | AA | -- | GG | AA | AA | AA | AA | AA | 0.016 | LRR_4 | Leucine Rich repeats (2 copies) | gi|350535589|ref|NP_001234202.1| NRC1 [Solanum lycopersicum]gi|83630761|gb|ABC26878.1| NRC1 [Solanum lycopersicum] | NRC1 | 0 | 102.5 | 50.3 | 69.1 | T | KOG4658 | Apoptotic ATPase | 5.00E-64 | 104.6 | 27.9 | 47.9 | K13457_pop-POPTR_755797 | 1.00E-74 | 106.2 | 30.1 | 48.8 | Solyc03g005660.2.1 | - | - | - | - | - | - | Dbxref=PRINTS:PR00364;Name=Solyc03g005660.1.1-PR00364-3;Note=DISEASERSIST;database=PRINTS;length=17 |
| 19956_484 | G | SL2.40ch03 | 482318 | exon | Y | T | C | + | caT | caC | H | H | sSNP | Solyc03g005670.2.1 | # | ATCATCATCAGATAGGGAAATGGTTAGATGTTGTTATGGGTTACCAGGGCTCATCAAGCA[T/C]CTTGCATCGTATAAAACAAGTGATCAATCATTTATCTCTGAATACTATTGTCTACTTTAT | 0.07 | - | 0 | 0 | 0 | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | CC | TT | -- | 1.60E-37 | NB-ARC | NB-ARC domain | gi|339431373|gb|AEJ72566.1| putative CC-NBS-LRR protein [Malus x domestica] | putative CC-NBS-LRR protein | 8.00E-71 | 117.3 | 33.3 | 53.0 | T | KOG4658 | Apoptotic ATPase | 1.00E-58 | 109.2 | 29.7 | 48.6 | K13457_pop-POPTR_755797 | 7.00E-28 | 111.5 | 25.5 | 44.0 | Solyc03g005670.2.1 | - | - | - | - | - | - | Dbxref=PRINTS:PR00364;Name=Solyc03g005670.1.1-PR00364-2;Note=DISEASERSIST;database=PRINTS;length=17 | |||||||||||||
| solcap_snp_sl_34398 | I | SL2.40ch03 | 508484 | exon | R | G | A | + | aGt | aAt | S | N | cSNP | Solyc03g005720.2.1 | # | GAGGTGGAGGAACGAGATCCCTCCGGTACAAAACCGAGGGACAGGTTCAA[A/G]TAGCTATCGTTCGACCGGACGTCACCCTAGAAGGCGTTCGAGTGGAGGGA | 0.1 | 0 | 0 | 0 | 0.21 | GG | GG | GG | GG | GG | AA | GG | GG | GG | AA | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | - | - | - | - | - | - | - | - | - | - | noCOG | 3.00E-65 | 124.1 | 27.0 | 31.5 | - | - | - | - | - | Solyc03g005720.2.1 | - | - | - | - | - | - | Name=IPR000008;Note=C2 calcium-dependent membrane targeting | |
| 13374_275 | G | SL2.40ch03 | 554488 | exon | S | C | G | - | Gtt | Ctt | V | L | cSNP | Solyc03g005820.2.1 | # | ACTAATTGTTGTTCCTACTTTGCCAAGCATAAATGGTGGTACCAAGTTGCCATTTTTACC[C/G]TTTTTACTATAATTGGAGAAGTAGTAACATCACTATTGGTTAAAACATATTTTACCAAAG | 0.14 | 0 | 0 | 0 | 0 | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | CC | GG | CC | 0.027 | WBP-1 | WW domain-binding protein 1 | - | - | - | - | - | - | - | noCOG | 1.00E-62 | 81.9 | 31.0 | 47.9 | - | - | - | - | - | Solyc03g005820.2.1 | - | No_hits | - | - | - | - | Name=IPR004853;Note=Protein of unknown function DUF250 | ||||||||||||||
| solcap_snp_sl_63167 | I | SL2.40ch03 | 631452 | exon | Y | T | C | - | gaA | gaG | E | E | sSNP | Solyc03g005930.2.1 | # | CTATACACCTTCTTCACCCCTTCACATCCTTTTCTAAACTTGTCACGTGC[T/C]TCTTCCTCCGTTAACCTCACCGCTCCGACGACAGTCACGTGAGGTTCAAA | 0.38 | 0.49 | 0 | 0 | 0 | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | CC | CC | CC | CC | CC | TT | TT | CC | TC | CC | CC | CC | TT | TC | TT | TT | TT | 2.40E-35 | CPDase | Cyclic phosphodiesterase-like protein | gi|255562558|ref|XP_002522285.1| Cyclic phosphodiesterase, putative [Ricinus communis]gi|223538538|gb|EEF40143.1| Cyclic phosphodiesterase, putative [Ricinus communis] | Cyclic phosphodiesterase, putative | 5.00E-70 | 86.0 | 57.0 | 66.1 | - | noCOG | 2.00E-55 | 81.9 | 44.8 | 60.2 | - | - | - | - | - | Solyc03g005930.2.1 | 1FSI | gi|11513544|pdb|1FSI|A Chain A, Crystal Structure Of Cyclic Nucleotide Phosphodiesterase Of Apprp From Arabidopsis Thalianagi|11513545|pdb|1FSI|B Chain B, Crystal Structure Of Cyclic Nucleotide Phosphodiesterase Of Apprp From Arabidopsis Thalianagi|11513546|pdb|1FSI|C Chain C, Crystal Structure Of Cyclic Nucleotide Phosphodiesterase Of Apprp From Arabidopsis Thalianagi|18655429|pdb|1JH6|A Chain A, Semi-Reduced Cyclic Nucleotide Phosphodiesterase From Arabidopsis Thalianagi|18655430|pdb|1JH6|B Chain B, Semi-Reduced Cyclic Nucleotide Phosphodiesterase From Arabidopsis Thalianagi|18655431|pdb|1JH7|A Chain A, Semi-Reduced Inhibitor-Bound Cyclic Nucleotide Phosphodiesterase From Arabidopsis Thaliana | 6.00E-56 | 85.5 | 44.8 | 60.2 | Name=IPR012386;Note=2 %2C 3 cyclic phosphodiesterase%2C plant | |
| solcap_snp_sl_63184 | I | SL2.40ch03 | 748576 | 3utr | Y | T | C | - | # | # | # | # | uSNP | Solyc03g006060.2.1 | # | TTAAGGTGGCTGTAAGTACTGCAAAGACATAGCATTGCTATTTACGTCTA[T/C]GCTATTTGAATGAGGAAGTAAGTAAATATATACCCTCTTTACCTCATCAA | 0.46 | 0 | 0 | 0 | 0 | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | CC | CC | CC | CC | CC | TT | TT | CC | TC | CC | CC | CC | CC | CC | CC | CC | CC | - | - | - | - | - | - | - | - | - | A | KOG1609 | Protein involved in mRNA turnover and stability | 2.00E-25 | 101.0 | 36.6 | 50.5 | - | - | - | - | - | Solyc03g006060.2.1 | - | - | - | - | - | - | Name=IPR011016;Note=Zinc finger%2C RING-CH-type |
| solcap_snp_sl_9663 | I | SL2.40ch03 | 828684 | intron | R | G | A | - | # | # | # | # | iSNP | Solyc03g006190.2.1 | # | CCAGGATCACCCCTCTAGTAGCCAGCCAAGTGAAAAAGCACACCTTCATC[A/G]GCACTTTGGAAATGTAAACTGCATCAAAACTTCCTCTTCCTAACCAAAAG | 0.48 | 0 | 0 | 0.18 | 0.5 | GG | AA | GG | GG | GG | GG | AA | AA | AA | GG | GG | GG | AA | AA | GG | AA | AA | AA | AA | AG | AA | AA | AA | GG | GG | GG | GG | GG | AA | AA | GG | AG | GG | GG | GG | GG | GG | GG | GG | GG | - | - | - | No_hits | - | - | - | - | - | - | - | - | - | - | - | - | - | - | Solyc03g006190.2.1 | - | No_hits | - | - | - | - | # | |||
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