| HMMscan | nr | KOG | KEGG | PDB | ITAG2.3 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| SNP ID | Array type ( I: Infinium G: Goldengate) |
Chromosome | Position on the SL2.40 | Location | IUPAC | SNP genotype (Heinz 1706-BG) | SNP genotype (Mutation) | Strand | Codon (Heinz 1706-BG) | Codon (Mutation) | Amino acid residue (Heinz 1706-BG) | Amino acid residue (Mutation) | SNP category | ITAG gene model | Functional site | Flanking sequences on SNP | HZ (The 40 lines) | HZ (cluster 1) | HZ (cluster 2) | HZ (cluster 3) | HZ (cluster 4) | San Marzano | Rutgers | Ponderosa | Aichi First | S. lycopersicum var cerasiforme (WIR25/30) | S. lycopersicum var cerasiforme (TOMJPF00009) | Earliana | Best Of All | Money Maker | Ailsa Craig | LA925 | Fruit | Rio Grande | Marglobe | Heinz 1706-BG | Tomato Chuukanbohon Nou 9 | Furikoma | Tomato Chuukanbohon Nou 11 | Reika | Momotaro 8 | Labell | Matrix | Geronimo | Micro-Tom_AM | Micro-Tom TGRC (LA3911) | Micro-Tom_MM | Micro-Tom | Micro-Tom NBRP (TOMJPF00001) | M82_MM | M82 | Regina | Sweet100 | S. pimpinellifolium (TOMJPF00012) | S. pimpinellifolium (LS1513) | S. pimpinellifolium (PI344102) | S. chilense (LA1958) | S. peruvianum (WIR2020) | S. peruvianum (TOMJPF00010) | S. pennellii (TOMJPF00008) | S. pennellii (LA716) | E-value | Model | HMMscan definition | nr definition | Product (KDRI) | E-value | Length% | Identity% | Positive% | KOG id | KOG No. | KOG definition | E-value | Length% | Identity% | Positive% | KO | E-value | Length% | Identity% | Positive% | Gene name [structural model (tomato)] (Structures with links can be browsed by Jmol.) |
PDB id | PDB definition | E-value | Length% | Identity% | Positive% | ITAG (interpro) |
| solcap_snp_sl_45224 | I | SL2.40ch04 | 35288 | intron | Y | T | C | - | # | # | # | # | iSNP | Solyc04g005030.2.1 | # | TCAGCAGCTCGCTCCAAGATATCTTTGATGTCAGGCTTCCCAAGTCCACC[T/C]GCACTTGTAAAGAACTTGAACCCATTCCTGTTGTAGGGAAGATGGCTTGC | 0.35 | 0.22 | 0 | 0.42 | 0 | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TC | CC | TT | TT | TT | TT | TT | TT | TT | TT | TT | TC | TT | CC | CC | CC | CC | CC | CC | CC | - | - | - | gi|255584011|ref|XP_002532751.1| phosphoglucomutase, putative [Ricinus communis]gi|223527502|gb|EEF29628.1| phosphoglucomutase, putative [Ricinus communis] | phosphoglucomutase, putative | 0 | 102.7 | 77.5 | 85.9 | G | KOG1220 | Phosphoglucomutase/phosphomannomutase Phosphoglucomutase/phosphomannomutase | 0 | 95.6 | 70.5 | 80.2 | K01840_lmf-LMOf2365_1901 | 1.00E-116 | 84.4 | 41.3 | 53.5 | Solyc04g005030.2.1 | 1K2Y | gi|20150646|pdb|1K2Y|X Chain X, Crystal Structure Of PhosphomannomutasePHOSPHOGLUCOMUTASE S108a Mutant From P. Aeruginosa | 3.00E-27 | 77.7 | 23.3 | 37.1 | Name=IPR005844;Note=Alpha-D-phosphohexomutase%2C alpha/beta/alpha domain I |
| solcap_snp_sl_45232 | I | SL2.40ch04 | 80919 | exon | Y | C | T | + | agC | agT | S | S | sSNP | Solyc04g005100.2.1 | # | ATGATGGAAGGTGCTGCTGCTACTGGTGGTTCATTTAGAAAAAGTGCTAG[T/C]ATGAATAATCTTGCTTTGTTGGACATGGAGCAGCAGCACCAAGATCATTC | 0.35 | 0.22 | 0 | 0.42 | 0 | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | TC | TT | CC | CC | CC | CC | CC | CC | CC | CC | CC | TC | CC | TT | TT | TT | TT | TT | TT | TT | - | - | - | gi|351722587|ref|NP_001237761.1| MYB transcription factor MYB138 [Glycine max]gi|110931720|gb|ABH02859.1| MYB transcription factor MYB138 [Glycine max] | MYB transcription factor MYB138 | 5.00E-59 | 110.0 | 56.1 | 65.1 | - | noCOG | 2.00E-48 | 97.0 | 46.8 | 58.4 | - | - | - | - | - | Solyc04g005100.2.1 | - | - | - | - | - | - | Name=IPR006447;Note=Myb-like DNA-binding region%2C SHAQKYF class | |
| solcap_snp_sl_45249 | I | SL2.40ch04 | 213755 | exon | Y | T | C | - | gtA | gtG | V | V | sSNP | Solyc04g005290.2.1 | # | ACGGCCTCTAATTTATGGGATTGTTCTGGCAAGTGTTTGTCACTTTTCGT[T/C]ACGCTGCTACTTAAAGCCAGCTCAGTCAAGTTGAAGTCGCAAGTAATAGC | 0.31 | 0 | 0 | 0.42 | 0 | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TC | CC | TT | TT | TT | TT | TT | TT | TT | TT | TT | TC | CC | CC | CC | -- | CC | CC | -- | -- | 2.9 | CDK2AP | Cyclin-dependent kinase 2-associated protein | gi|30678079|ref|NP_178475.2| 18S pre-ribosomal assembly protein gar2-related protein [Arabidopsis thaliana]gi|42570677|ref|NP_973412.1| 18S pre-ribosomal assembly protein gar2-related protein [Arabidopsis thaliana]gi|79316683|ref|NP_001030966.1| 18S pre-ribosomal assembly protein gar2-related protein [Arabidopsis thaliana]gi|186499149|ref|NP_001118260.1| 18S pre-ribosomal assembly protein gar2-related protein [Arabidopsis thaliana]gi|330250656|gb|AEC05750.1| 18S pre-ribosomal assembly protein gar2-related protein [Arabidopsis thaliana]gi|330250657|gb|AEC05751.1| 18S pre-ribosomal assembly protein gar2-related protein [Arabidopsis thaliana]gi|330250658|gb|AEC05752.1| 18S pre-ribosomal assembly protein gar2-related protein [Arabidopsis thaliana]gi|330250659|gb|AEC05753.1| 18S pre-ribosomal assembly protein gar2-related protein [Arabidopsis thaliana] | 18S pre-ribosomal assembly protein gar2-related protein | 1.00E-23 | 82.5 | 10.2 | 12.2 | - | noCOG | 4.00E-11 | 52.8 | 6.8 | 7.9 | - | - | - | - | - | Solyc04g005290.2.1 | - | No_hits | - | - | - | - | # | |
| SL10952_387 | I | SL2.40ch04 | 223026 | 5utr | W | A | T | + | # | # | # | # | rSNP | Solyc04g005310.2.1 | # | CTTGTGTCTTAATGTGTATGTAGTATGCCAGTACCAGCACAGTTTCTATT[A/T]GTCCTTGTTTAACCTATGCAGTCAAAACGTGTCAAATGTTGGATAGCTAT | 0.42 | 0 | 0 | 0.42 | 0.21 | AA | AA | AA | AA | TT | TT | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AT | TT | AA | AA | AA | AA | AA | AA | AA | AA | AA | AT | TT | TT | TT | TT | TT | TT | TT | TT | - | - | - | - | - | - | - | - | - | R | KOG3066 | Translin-associated protein X | 5.00E-85 | 152.6 | 77.0 | 87.8 | - | - | - | - | - | Solyc04g005310.2.1 | 3PJA | gi|332639760|pdb|3PJA|J Chain J, Crystal Structure Of Human C3po Complexgi|332639761|pdb|3PJA|K Chain K, Crystal Structure Of Human C3po Complexgi|332639762|pdb|3PJA|L Chain L, Crystal Structure Of Human C3po Complexgi|332639825|pdb|3QB5|K Chain K, Human C3po Complex In The Presence Of Mnso4 | 2.00E-26 | 148.0 | 31.6 | 52.6 | Name=IPR002848;Note=Translin |
| CL016772-0147_solcap_snp_sl_45273 | I | SL2.40ch04 | 313965 | exon | Y | C | T | - | Gtt | Att | V | I | cSNP | Solyc04g005450.2.1 | # | GATTGTAACAAAATCACCAGATTTTGATAAGGTTTTTGGGGTTACAGAAA[T/C]TGAGATTTGTGAAGAAGATGATGATGAGATCAAGCTGAAAAGGATAAGTA | 0.35 | 0.22 | 0 | 0.42 | 0 | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | TC | TT | CC | CC | CC | CC | CC | CC | CC | CC | CC | TC | CC | TT | TT | TT | TT | TT | TT | TT | - | - | - | gi|255542092|ref|XP_002512110.1| Nucleotide pyrophosphatase/phosphodiesterase, putative [Ricinus communis]gi|223549290|gb|EEF50779.1| Nucleotide pyrophosphatase/phosphodiesterase, putative [Ricinus communis] | Nucleotide pyrophosphatase/phosphodiesterase, putative | 0 | 100.3 | 69.8 | 79.2 | G | KOG1378 | Purple acid phosphatase | 0 | 101.2 | 62.8 | 77.8 | K01113_vvi-100248170 | 3.00E-62 | 102.2 | 27.2 | 39.7 | Solyc04g005450.2.1 | 2QFP | gi|209447303|pdb|2QFP|A Chain A, Crystal Structure Of Red Kidney Bean Purple Acid Phosphatase In Complex With Fluoridegi|209447304|pdb|2QFP|B Chain B, Crystal Structure Of Red Kidney Bean Purple Acid Phosphatase In Complex With Fluoridegi|209447305|pdb|2QFP|C Chain C, Crystal Structure Of Red Kidney Bean Purple Acid Phosphatase In Complex With Fluoridegi|209447306|pdb|2QFP|D Chain D, Crystal Structure Of Red Kidney Bean Purple Acid Phosphatase In Complex With Fluoridegi|209447307|pdb|2QFR|A Chain A, Crystal Structure Of Red Kidney Bean Purple Acid Phosphatase With Bound Sulfategi|209447308|pdb|2QFR|B Chain B, Crystal Structure Of Red Kidney Bean Purple Acid Phosphatase With Bound Sulfate | 3.00E-22 | 65.4 | 18.5 | 29.2 | Name=IPR008963;Note=Purple acid phosphatase-like%2C N-terminal |
| solcap_snp_sl_45276 | I | SL2.40ch04 | 323820 | exon | Y | C | T | - | cGa | cAa | R | Q | cSNP | Solyc04g005480.1.1 | # | TGTTGGGCTTATGGGTCGATGAATGACCCGATCCGGATGTGCTCTTGGCT[T/C]GTGTTGGATCCATAGAATGAACTAGTATCTTTCGATTAATAAAATAATTG | 0.4 | 0 | 0 | 0.42 | 0.11 | CC | CC | CC | CC | TT | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | TC | TT | CC | CC | CC | CC | CC | CC | CC | CC | CC | TC | TT | TT | TT | TT | TT | TT | TT | TT | - | - | - | gi|154259313|gb|ABS72020.1| putative drought-induced protein SDi-6-like [Olea europaea] | putative drought-induced protein SDi-6-like | 3.00E-17 | 72.4 | 34.7 | 45.9 | - | noCOG | 1.00E-20 | 110.0 | 37.6 | 55.3 | - | - | - | - | - | Solyc04g005480.1.1 | - | - | - | - | - | - | # | |
| solcap_snp_sl_45301 | I | SL2.40ch04 | 445345 | exon | K | G | T | + | Gct | Tct | A | S | cSNP | Solyc04g005670.1.1 | predicted | TATTGTCACATGTCATTTATCGTTATAGTTTGCTGACAAACAGTTGGTCA[T/G]CTGGAACAGAAATGAACGCACCAAGGTGTTTGTTTGGCTCTGCCAGCTCT | 0.38 | 0 | 0 | 0.42 | 0 | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | TG | TT | GG | GG | GG | GG | GG | GG | GG | GG | GG | TG | TT | TT | TT | TT | TT | TT | TT | TT | 8.80E-26 | Kelch_1 | Kelch motif | gi|48210029|gb|AAT40540.1| kelch repeat-containing F-box family protein, putative [Solanum demissum] | kelch repeat-containing F-box family protein, putative | 1.00E-180 | 127.0 | 78.2 | 86.1 | R | KOG1072 | FOG: Kelch repeat | 1.00E-151 | 109.2 | 66.8 | 78.0 | - | - | - | - | - | 1U6D | gi|56554151|pdb|1U6D|X Chain X, Crystal Structure Of The Kelch Domain Of Human Keap1gi|114793833|pdb|2FLU|X Chain X, Crystal Structure Of The Kelch-Neh2 Complex | 1.00E-10 | 76.2 | 16.3 | 25.2 | Name=SM00612;length=51;Note=no description;Dbxref=SMART:SM00612;database=SMART | |
| solcap_snp_sl_45332 | I | SL2.40ch04 | 585828 | 3utr | Y | T | C | - | # | # | # | # | uSNP | Solyc04g005910.2.1 | # | ATAAACAAAGCTCAATATAACACATGTTTTCTGTTTTATGTTTGCGATGT[T/C]TGAACCAACTTTCACGCACCTCGACTAATTCTACGAGAGACCTGTCACCT | 0.35 | 0.22 | 0 | 0.42 | 0 | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TC | CC | TT | TT | TT | TT | TT | TT | TT | TT | TT | TC | CC | CC | CC | CC | CC | CC | TC | TC | - | - | - | gi|110432095|gb|ABG73621.1| leucine-rich repeat receptor-like kinase [Populus tomentosa] | leucine-rich repeat receptor-like kinase | 0 | 100.3 | 76.5 | 85.0 | - | noCOG | 0 | 102.9 | 70.8 | 83.2 | K13418_vvi-100247683 | 1.00E-168 | 100.6 | 52.1 | 65.6 | Solyc04g005910.2.1 | 2QKW | gi|158430251|pdb|2QKW|B Chain B, Structural Basis For Activation Of Plant Immunity By Bacterial Effector Protein Avrpto | 1.00E-41 | 51.8 | 16.8 | 25.8 | Dbxref=PROSITE:PS00108;Name=Solyc04g005910.1.1-PS00108-0;Note=PROTEIN_KINASE_ST;database=PROSITE;length=13 | |
| solcap_snp_sl_63760 | I | SL2.40ch04 | 713815 | genome | R | G | A | # | # | # | # | # | gSNP | # | # | GGACAATTGATAAATACCCTATAAGACCATAAGCCAATATTGTTGAATGA[A/G]TTAATTTCAATCATTCCAACAAAGAAGCATAACTACACATCTCCTAATTA | 0.5 | 0 | 0 | 0.5 | 0.42 | GG | AA | GG | GG | AA | GG | AA | GG | GG | GG | AA | GG | GG | GG | GG | GG | AA | GG | GG | GG | AA | AA | AG | AA | AA | AA | AA | AA | GG | GG | GG | AG | AA | AA | AA | -- | -- | -- | -- | -- | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | # |
| solcap_snp_sl_9832 | I | SL2.40ch04 | 741558 | 5utr | W | T | A | - | # | # | # | # | rSNP | Solyc04g007020.2.1 | # | CTGAGGAGATTTCTGCTTTGAAAAACCTTGAAAATTTATCATCATTTTTC[A/T]GATTCACTCTCCCCCAAAATCCACACAAAAACAATGAAATACAGTTGAAA | 0.5 | 0.22 | 0 | 0.48 | 0.44 | AA | AA | TT | TT | AA | TT | AA | AA | AA | AA | AA | TT | AT | AA | TT | AA | AA | TT | TT | AT | AT | TT | AA | AA | AA | AA | AA | AA | TT | TT | AA | AT | AA | TT | TT | TT | TT | TT | TT | TT | - | - | - | - | - | - | - | - | - | - | noCOG | 1.00E-58 | 85.7 | 35.0 | 55.2 | - | - | - | - | - | Solyc04g007020.2.1 | 3R9M | gi|346651977|pdb|3R9M|A Chain A, Crystal Structure Of The Brox Bro1 Domain | 1.00E-11 | 99.7 | 21.2 | 38.2 | Name=IPR004328;Note=BRO1 | |
| solcap_snp_sl_21314 | I | SL2.40ch04 | 741617 | 5utr | R | G | A | - | # | # | # | # | rSNP | Solyc04g007020.2.1 | # | CTCCCCCAAAATCCACACAAAAACAATGAAATACAGTTGAAATTACACAG[A/G]AAAAAAATGGGAAAACTTGTAAGAAAAATTGAGAAGAAAATTATGGTAAT | 0.39 | 0.12 | 0 | 0.42 | 0.44 | AA | AA | GG | GG | AA | GG | AA | AA | AA | AA | AA | GG | AG | AA | GG | AA | AA | GG | GG | AG | AA | AA | AA | AA | AA | AA | AA | AA | GG | GG | AA | AA | AA | AA | AA | AA | AA | AG | AA | AA | - | - | - | - | - | - | - | - | - | - | noCOG | 1.00E-58 | 85.7 | 35.0 | 55.2 | - | - | - | - | - | Solyc04g007020.2.1 | 3R9M | gi|346651977|pdb|3R9M|A Chain A, Crystal Structure Of The Brox Bro1 Domain | 1.00E-11 | 99.7 | 21.2 | 38.2 | Name=IPR004328;Note=BRO1 | |
| solcap_snp_sl_9833 | I | SL2.40ch04 | 744120 | exon | R | A | G | - | tcT | tcC | S | S | sSNP | Solyc04g007030.2.1 | # | TACCTCAAATGAAATAATTGGTTGAAGTATGGGGAGAATTTAAAATTGAT[A/G]GATTCAACATCCACGACTCTAATAAGTGGAAATGCATTGTGAATGAATTT | 0.45 | 0.5 | 0 | 0.42 | 0.44 | GG | GG | AA | AA | GG | AA | GG | GG | GG | GG | GG | AA | AG | GG | AA | GG | GG | AA | AA | AG | GG | GG | GG | GG | GG | GG | GG | GG | AA | AA | GG | GG | GG | GG | GG | AA | AA | AA | -- | -- | - | - | - | gi|350535589|ref|NP_001234202.1| NRC1 [Solanum lycopersicum]gi|83630761|gb|ABC26878.1| NRC1 [Solanum lycopersicum] | NRC1 | 1.00E-176 | 100.5 | 43.2 | 62.6 | T | KOG4658 | Apoptotic ATPase | 6.00E-63 | 102.5 | 24.9 | 46.2 | K13457_pop-POPTR_755797 | 3.00E-68 | 104.1 | 27.0 | 47.4 | Solyc04g007030.2.1 | - | - | - | - | - | - | Dbxref=COIL:coil;Name=Solyc04g007030.1.1-coil-0;Note=coiled-coil;database=COIL;length=22 |
| solcap_snp_sl_63772 | I | SL2.40ch04 | 744713 | exon | R | G | A | - | Cat | Tat | H | Y | cSNP | Solyc04g007030.2.1 | # | ACTCATCTCTACAAATACACCACGATATTTATCCTCTTCATCATAAAGAT[A/G]ATATAATTGTGACAAATTCTTGTCAACCCTTTCCCAGTATCTTCTGTCTG | 0.2 | 0.5 | 0 | 0.42 | 0 | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | AG | AA | GG | GG | GG | GG | GG | GG | GG | GG | GG | AG | GG | AA | AA | GG | -- | -- | -- | -- | 6.10E-59 | NB-ARC | NB-ARC domain | gi|350535589|ref|NP_001234202.1| NRC1 [Solanum lycopersicum]gi|83630761|gb|ABC26878.1| NRC1 [Solanum lycopersicum] | NRC1 | 1.00E-176 | 100.5 | 43.2 | 62.6 | T | KOG4658 | Apoptotic ATPase | 6.00E-63 | 102.5 | 24.9 | 46.2 | K13457_pop-POPTR_755797 | 3.00E-68 | 104.1 | 27.0 | 47.4 | Solyc04g007030.2.1 | - | - | - | - | - | - | Dbxref=COIL:coil;Name=Solyc04g007030.1.1-coil-0;Note=coiled-coil;database=COIL;length=22 |
| solcap_snp_sl_9834 | I | SL2.40ch04 | 744896 | exon | R | A | G | - | Ttg | Ctg | L | L | sSNP | Solyc04g007030.2.1 | # | AACAAACTCAACAGGACATGAGTTTCCATTGCCAAAAGCTCTATTTACCA[A/G]CAATTCAAAACTTTGTTCTGCATGCAATGGTTTCATATAATAAGGACCTG | 0.49 | 0 | 0 | 0.48 | 0.39 | GG | GG | AA | AA | GG | GG | GG | GG | GG | GG | GG | AA | AG | GG | AA | GG | GG | AA | AA | AG | AG | AA | GG | GG | GG | GG | GG | GG | AA | AA | GG | AG | AA | AA | AA | AA | AA | AA | -- | -- | 6.10E-59 | NB-ARC | NB-ARC domain | gi|350535589|ref|NP_001234202.1| NRC1 [Solanum lycopersicum]gi|83630761|gb|ABC26878.1| NRC1 [Solanum lycopersicum] | NRC1 | 1.00E-176 | 100.5 | 43.2 | 62.6 | T | KOG4658 | Apoptotic ATPase | 6.00E-63 | 102.5 | 24.9 | 46.2 | K13457_pop-POPTR_755797 | 3.00E-68 | 104.1 | 27.0 | 47.4 | Solyc04g007030.2.1 | - | - | - | - | - | - | Dbxref=COIL:coil;Name=Solyc04g007030.1.1-coil-0;Note=coiled-coil;database=COIL;length=22 |
| solcap_snp_sl_15357 | I | SL2.40ch04 | 767236 | exon | R | A | G | + | ccA | ccG | P | P | sSNP | Solyc04g007050.2.1 | # | CAGATGTTGATTAGCTTGTGGATGGCGGAGGGGCTAATAGAGTCAAATCC[A/G]ATAAATTTCTCTTCCCCTAAGGACAAAGCAGAGGATCATTTGATGGAGTT | 0.32 | 0.38 | 0 | 0.42 | 0.16 | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | AG | GG | AA | GG | GG | AA | AA | AG | GG | GG | GG | GG | GG | GG | GG | GG | AA | AA | GG | GG | GG | GG | GG | GG | GG | GG | AA | AA | - | - | - | gi|350535589|ref|NP_001234202.1| NRC1 [Solanum lycopersicum]gi|83630761|gb|ABC26878.1| NRC1 [Solanum lycopersicum] | NRC1 | 1.00E-128 | 108.6 | 39.2 | 57.1 | T | KOG4658 | Apoptotic ATPase | 4.00E-46 | 110.1 | 26.7 | 48.2 | - | - | - | - | - | Solyc04g007050.2.1 | - | - | - | - | - | - | Dbxref=PRINTS:PR00364;Name=Solyc04g007050.1.1-PR00364-3;Note=DISEASERSIST;database=PRINTS;length=17 |
| solcap_snp_sl_63775 | I | SL2.40ch04 | 767993 | exon | W | A | T | + | Act | Tct | T | S | cSNP | Solyc04g007050.2.1 | # | AGGCTTCCAACAGCCTCAAAAAATTGAGCATACAAGGGAACATAGAAGAT[A/T]CTCTTAAAACGAACAGCGACAGATTCAGCACGTTTGAAGGGTTTCAAACT | 0.38 | 0 | 0 | 0.42 | 0 | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AT | TT | AA | AA | AA | AA | AA | AA | AA | AA | AA | AT | TT | TT | TT | TT | TT | TT | TT | TT | - | - | - | gi|350535589|ref|NP_001234202.1| NRC1 [Solanum lycopersicum]gi|83630761|gb|ABC26878.1| NRC1 [Solanum lycopersicum] | NRC1 | 1.00E-128 | 108.6 | 39.2 | 57.1 | T | KOG4658 | Apoptotic ATPase | 4.00E-46 | 110.1 | 26.7 | 48.2 | - | - | - | - | - | Solyc04g007050.2.1 | - | - | - | - | - | - | Dbxref=PRINTS:PR00364;Name=Solyc04g007050.1.1-PR00364-3;Note=DISEASERSIST;database=PRINTS;length=17 |
| solcap_snp_sl_9835 | I | SL2.40ch04 | 773887 | exon | W | T | A | + | cTa | cAa | L | Q | cSNP | Solyc04g007060.2.1 | # | ATTCCTTGACGATGCTGCTAAATTTCACAGTGAGAGCAGTTTATGGGATC[A/T]ATTGGTGAAAGATATTCAAAAAATGGTACATAAATCTGAAGATGTCATTG | 0.24 | 0 | 0 | 0.32 | 0.16 | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | TA | AA | TT | AA | AA | TT | TA | TA | AA | AA | AA | AA | AA | AA | AA | AA | TT | TT | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | - | - | - | gi|350535589|ref|NP_001234202.1| NRC1 [Solanum lycopersicum]gi|83630761|gb|ABC26878.1| NRC1 [Solanum lycopersicum] | NRC1 | 0 | 101.0 | 45.6 | 65.6 | T | KOG4658 | Apoptotic ATPase | 1.00E-68 | 102.5 | 27.6 | 49.3 | K13457_pop-POPTR_755797 | 8.00E-63 | 104.7 | 27.0 | 47.3 | Solyc04g007060.2.1 | - | - | - | - | - | - | Dbxref=PRINTS:PR00364;Name=Solyc04g007060.1.1-PR00364-3;Note=DISEASERSIST;database=PRINTS;length=17 |
| solcap_snp_sl_9836 | I | SL2.40ch04 | 776334 | exon | R | G | A | + | Gaa | Aaa | E | K | cSNP | Solyc04g007060.2.1 | # | AGAGAGTTTTTGGCAAGGGAAGTTGTCCTGATGAATTAAAAGATGTTGGA[A/G]AAAGAATTGCAGGAAACTGTGGTGGAGTACCACTTATTGTAGTTGTCATT | 0.27 | 0.22 | 0 | 0.32 | 0.16 | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AG | AA | GG | AA | AA | GG | AG | AG | AA | AA | AA | AA | AA | AA | AA | AA | GG | GG | AA | AA | GG | AA | AA | AA | AA | AA | AA | AA | 2.40E-64 | NB-ARC | NB-ARC domain | gi|350535589|ref|NP_001234202.1| NRC1 [Solanum lycopersicum]gi|83630761|gb|ABC26878.1| NRC1 [Solanum lycopersicum] | NRC1 | 0 | 101.0 | 45.6 | 65.6 | T | KOG4658 | Apoptotic ATPase | 1.00E-68 | 102.5 | 27.6 | 49.3 | K13457_pop-POPTR_755797 | 8.00E-63 | 104.7 | 27.0 | 47.3 | Solyc04g007060.2.1 | - | - | - | - | - | - | Dbxref=PRINTS:PR00364;Name=Solyc04g007060.1.1-PR00364-3;Note=DISEASERSIST;database=PRINTS;length=17 |
| solcap_snp_sl_9837 | I | SL2.40ch04 | 776335 | exon | W | A | T | + | gAa | gTa | E | V | cSNP | Solyc04g007060.2.1 | # | GAGAGTTTTTGGCAAGGGAAGTTGTCCTGATGAATTAAAAGATGTTGGAG[A/T]AAGAATTGCAGGAAACTGTGGTGGAGTACCACTTATTGTAGTTGTCATTG | 0.41 | 0.38 | 0 | 0.32 | 0.16 | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TA | TT | AA | TT | TT | AA | TA | TA | TT | TT | TT | TT | TT | TT | TT | TT | AA | AA | TT | TT | AA | TT | TT | AA | AA | AA | AA | AA | 2.40E-64 | NB-ARC | NB-ARC domain | gi|350535589|ref|NP_001234202.1| NRC1 [Solanum lycopersicum]gi|83630761|gb|ABC26878.1| NRC1 [Solanum lycopersicum] | NRC1 | 0 | 101.0 | 45.6 | 65.6 | T | KOG4658 | Apoptotic ATPase | 1.00E-68 | 102.5 | 27.6 | 49.3 | K13457_pop-POPTR_755797 | 8.00E-63 | 104.7 | 27.0 | 47.3 | Solyc04g007060.2.1 | - | - | - | - | - | - | Dbxref=PRINTS:PR00364;Name=Solyc04g007060.1.1-PR00364-3;Note=DISEASERSIST;database=PRINTS;length=17 |
| solcap_snp_sl_9838 | I | SL2.40ch04 | 776552 | exon | Y | C | T | + | ttC | ttT | F | F | sSNP | Solyc04g007060.2.1 | # | GATCGTCTGTCTCAAGAAATGCAGACGTGCTTTTTATATTCTGGTATCTT[T/C]CCTCGGGGCTTTGATATCCCTGCTTGGAAATTGATTCGCTTGTGGATTGC | 0.27 | 0.22 | 0 | 0.32 | 0.16 | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TC | TT | CC | TT | TT | CC | TC | TC | TT | TT | TT | TT | TT | TT | TT | TT | CC | CC | TT | TT | CC | TT | TT | TT | TT | TT | TT | TT | 2.40E-64 | NB-ARC | NB-ARC domain | gi|350535589|ref|NP_001234202.1| NRC1 [Solanum lycopersicum]gi|83630761|gb|ABC26878.1| NRC1 [Solanum lycopersicum] | NRC1 | 0 | 101.0 | 45.6 | 65.6 | T | KOG4658 | Apoptotic ATPase | 1.00E-68 | 102.5 | 27.6 | 49.3 | K13457_pop-POPTR_755797 | 8.00E-63 | 104.7 | 27.0 | 47.3 | Solyc04g007060.2.1 | - | - | - | - | - | - | Dbxref=PRINTS:PR00364;Name=Solyc04g007060.1.1-PR00364-3;Note=DISEASERSIST;database=PRINTS;length=17 |
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