| HMMscan | nr | KOG | KEGG | PDB | ITAG2.3 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| SNP ID | Array type ( I: Infinium G: Goldengate) |
Chromosome | Position on the SL2.40 | Location | IUPAC | SNP genotype (Heinz 1706-BG) | SNP genotype (Mutation) | Strand | Codon (Heinz 1706-BG) | Codon (Mutation) | Amino acid residue (Heinz 1706-BG) | Amino acid residue (Mutation) | SNP category | ITAG gene model | Functional site | Flanking sequences on SNP | HZ (The 40 lines) | HZ (cluster 1) | HZ (cluster 2) | HZ (cluster 3) | HZ (cluster 4) | San Marzano | Rutgers | Ponderosa | Aichi First | S. lycopersicum var cerasiforme (WIR25/30) | S. lycopersicum var cerasiforme (TOMJPF00009) | Earliana | Best Of All | Money Maker | Ailsa Craig | LA925 | Fruit | Rio Grande | Marglobe | Heinz 1706-BG | Tomato Chuukanbohon Nou 9 | Furikoma | Tomato Chuukanbohon Nou 11 | Reika | Momotaro 8 | Labell | Matrix | Geronimo | Micro-Tom_AM | Micro-Tom TGRC (LA3911) | Micro-Tom_MM | Micro-Tom | Micro-Tom NBRP (TOMJPF00001) | M82_MM | M82 | Regina | Sweet100 | S. pimpinellifolium (TOMJPF00012) | S. pimpinellifolium (LS1513) | S. pimpinellifolium (PI344102) | S. chilense (LA1958) | S. peruvianum (WIR2020) | S. peruvianum (TOMJPF00010) | S. pennellii (TOMJPF00008) | S. pennellii (LA716) | E-value | Model | HMMscan definition | nr definition | Product (KDRI) | E-value | Length% | Identity% | Positive% | KOG id | KOG No. | KOG definition | E-value | Length% | Identity% | Positive% | KO | E-value | Length% | Identity% | Positive% | Gene name [structural model (tomato)] (Structures with links can be browsed by Jmol.) |
PDB id | PDB definition | E-value | Length% | Identity% | Positive% | ITAG (interpro) |
| CL015995-0443 | I | SL2.40ch05 | 2874 | exon | Y | T | C | - | ggA | ggG | G | G | sSNP | Solyc05g005000.2.1 | # | TTGTAACATTTATTTTGAAGTTATATGTTCACATTTATGATTTGTCGAAATCTTGAGTCTTTACTTAATTGACTGATTTCATTTACAGTCCTGAAGATGG[A/G]AAGTCCTTGAGGCATGTGTCTTTGCTTCAGCTTTGCCGCATTGGAGTAATAATTTATGATTGGTTTGACATTCCTTGGCTAAAGAACTATTACAACTTTG | 0.3 | 0.22 | 0 | 0 | 0 | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AG | AA | GG | GG | GG | GG | GG | GG | GG | - | - | - | gi|255573977|ref|XP_002527906.1| catalytic, putative [Ricinus communis]gi|223532681|gb|EEF34463.1| catalytic, putative [Ricinus communis] | catalytic, putative | 0 | 101.1 | 78.9 | 87.8 | - | noCOG | 0 | 102.8 | 75.2 | 86.5 | K01046_cbk-CLL_A3316 | 3.00E-33 | 108.0 | 26.3 | 38.7 | Solyc05g005000.2.1 | 2HIH | gi|149241972|pdb|2HIH|A Chain A, Crystal Structure Of Staphylococcus Hyicus Lipasegi|149241973|pdb|2HIH|B Chain B, Crystal Structure Of Staphylococcus Hyicus Lipase | 6.00E-28 | 93.7 | 24.8 | 36.5 | # | |
| solcap_snp_sl_69219 | I | SL2.40ch05 | 108012 | exon | Y | C | T | - | gcG | gcA | A | A | sSNP | Solyc05g005100.2.1 | # | CATTGGTGCTTACCAGGTGTACCCGACACTTGGAACGAGTTGTTATATGC[A/G]TCTCTCCTGAAAACCAGAAAAGGCTCTTGGAACAACTGAACTTTTTCTTT | 0.3 | 0.22 | 0 | 0 | 0 | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | AG | GG | AA | AA | AA | AA | AA | AA | AA | 8.80E-57 | DUF231 | Arabidopsis proteins of unknown function | - | - | - | - | - | - | - | noCOG | 1.00E-172 | 104.6 | 54.5 | 62.2 | - | - | - | - | - | Solyc05g005100.2.1 | - | - | - | - | - | - | Name=IPR004253;Note=Protein of unknown function DUF231%2C plant | |
| CL015678-0355 | I | SL2.40ch05 | 110039 | exon | Y | C | T | - | Gat | Aat | D | N | cSNP | Solyc05g005100.2.1 | # | GGATGTTGTGGGATTAAGTGGTGGTGATAGAAAAAAAGTTGCAGTGGGTGAGGGTAAAGGGNGTTTGNCTGTGGAGAAGAATGCTGTGTTGTTTAAAAGT[A/G]ATGGAGAATCATTGATTAGACGCCACAGGGATTTTTATGGGGATTGTGATGTATATGATGGTGAATGGGTTAGAGATGACACGAAGCCGTATTATCCTCC | 0.1 | 0.3 | 0 | 0 | 0 | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | AG | GG | GG | GG | AG | GG | AA | GG | GG | - | - | - | - | - | - | - | - | - | - | noCOG | 1.00E-172 | 104.6 | 54.5 | 62.2 | - | - | - | - | - | Solyc05g005100.2.1 | - | - | - | - | - | - | Name=IPR004253;Note=Protein of unknown function DUF231%2C plant | |
| CL015678-0316 | I | SL2.40ch05 | 110078 | exon | Y | T | C | - | Agt | Ggt | S | G | cSNP | Solyc05g005100.2.1 | # | AGATTCCACAAACTATAATGTGACCTCAACTTATATTGAGGATGTTGTGGGATTAAGTGGTGGTGATAGAAAAAAAGTTGCAGTGGGTGAGGGTAAAGGG[A/G]GTTTGNCTGTGGAGAAGAATGCTGTGTTGTTTAAAAGTNATGGAGAATCATTGATTAGACGCCACAGGGATTTTTATGGGGATTGTGATGTATATGATGG | 0.22 | 0.47 | 0 | 0 | 0 | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | GG | GG | GG | GG | GG | - | - | - | - | - | - | - | - | - | - | noCOG | 1.00E-172 | 104.6 | 54.5 | 62.2 | - | - | - | - | - | Solyc05g005100.2.1 | - | - | - | - | - | - | Name=IPR004253;Note=Protein of unknown function DUF231%2C plant | |
| CL015499-0120 | I | SL2.40ch05 | 345515 | exon | R | G | A | + | gcG | gcA | A | A | sSNP | Solyc05g005460.2.1 | # | GTCTTTGAAATCTATCTTGGAGTCACAGTCAAGAAACTACGTAATTGC[A/G]GCTGATGGAAGGAAGGTTGATTCAAGATGCTGCTCTTCTCTCCTTCATTTCATACTCTTGTTTATTAATAAAAGTNTCCCTCATTACTTTTTTGCTGTGT | 0.3 | 0.22 | 0 | 0 | 0 | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | AG | GG | AA | AA | AA | AA | AA | AA | AA | 8.10E-08 | SCO1-SenC | SCO1/SenC | gi|255568796|ref|XP_002525369.1| nucleoredoxin, putative [Ricinus communis]gi|223535332|gb|EEF37007.1| nucleoredoxin, putative [Ricinus communis] | nucleoredoxin, putative | 0 | 99.0 | 62.0 | 76.9 | R | KOG2501 | Thioredoxin, nucleoredoxin and related proteins | 0 | 99.5 | 57.0 | 73.8 | - | - | - | - | - | Solyc05g005460.2.1 | 1OC9 | gi|29726921|pdb|1OC9|A Chain A, Tryparedoxin Ii From C.Fasciculata Solved By Mr | 1.00E-24 | 26.2 | 10.5 | 14.1 | Name=IPR012336;Note=Thioredoxin-like fold |
| solcap_snp_sl_69165 | I | SL2.40ch05 | 345868 | exon | R | A | G | + | Aag | Gag | K | E | cSNP | Solyc05g005460.2.1 | # | GATGACTAGGGTAGGAAGGGTAGAGAGCTCAAAGTACCTGGCCAGCTTCT[T/C]GCAGGTCTTGTCTTTTAAGGGAAGTGAAAACCAAGGCATTCTCGAAAACT | 0.36 | 0 | 0 | 0 | 0.11 | TT | TT | TT | TT | TT | CC | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TC | CC | CC | CC | CC | CC | CC | CC | CC | 3.90E-25 | AhpC-TSA | AhpC/TSA family | gi|255568796|ref|XP_002525369.1| nucleoredoxin, putative [Ricinus communis]gi|223535332|gb|EEF37007.1| nucleoredoxin, putative [Ricinus communis] | nucleoredoxin, putative | 0 | 99.0 | 62.0 | 76.9 | R | KOG2501 | Thioredoxin, nucleoredoxin and related proteins | 0 | 99.5 | 57.0 | 73.8 | - | - | - | - | - | Solyc05g005460.2.1 | 1OC9 | gi|29726921|pdb|1OC9|A Chain A, Tryparedoxin Ii From C.Fasciculata Solved By Mr | 1.00E-24 | 26.2 | 10.5 | 14.1 | Name=IPR012336;Note=Thioredoxin-like fold |
| SGN-U577224_snp912 | I | SL2.40ch05 | 355172 | exon | R | A | G | + | aaA | aaG | K | K | sSNP | Solyc05g005480.2.1 | # | CCACCAGGTTTTAGATTTGTGGTGACATCAAATGGAGAGATGTTGAAGAA[A/G]CTGAACCCATACTTGGAAAGTGGGAAGGTGAAACCAGTGATAGATCCAAA | 0.12 | 0.38 | 0 | 0 | 0 | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AG | AA | GG | GG | AA | AA | AA | AA | AA | - | - | - | gi|255568816|ref|XP_002525379.1| alcohol dehydrogenase, putative [Ricinus communis]gi|223535342|gb|EEF37017.1| alcohol dehydrogenase, putative [Ricinus communis] | alcohol dehydrogenase, putative | 1.00E-158 | 100.3 | 76.3 | 87.4 | CR | KOG1198 | Zinc-binding oxidoreductase | 1.00E-148 | 99.5 | 66.2 | 73.7 | K00001_bca-BCE_3521 | 8.00E-49 | 85.6 | 33.5 | 47.7 | Solyc05g005480.2.1 | 3TQH | gi|347948718|pdb|3TQH|A Chain A, Structure Of The Quinone Oxidoreductase From Coxiella Burnetii | 4.00E-32 | 82.7 | 28.4 | 41.0 | Name=IPR002085;Note=Alcohol dehydrogenase superfamily%2C zinc-containing |
| solcap_snp_sl_69104 | I | SL2.40ch05 | 558180 | exon | M | C | A | + | atC | atA | I | I | sSNP | Solyc05g005740.2.1 | # | GAGTCATCTTTATGAGCATCGCGGTAACCATACCTGACAATGCATCTGTA[T/G]ATGCGATACTCTCTGGGACCAATGTGTCCAACGAGGAAACGCTCCTCGTG | 0.3 | 0.22 | 0 | 0 | 0 | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | TG | GG | TT | TT | TT | TT | TT | TT | TT | 2.50E-189 | K_trans | K+ potassium transporter | gi|255587842|ref|XP_002534415.1| Potassium transporter, putative [Ricinus communis]gi|223525338|gb|EEF27967.1| Potassium transporter, putative [Ricinus communis] | Potassium transporter, putative | 0 | 99.4 | 80.5 | 89.2 | - | noCOG | 0 | 100.3 | 75.0 | 87.3 | K03549_osa-4330614 | 0 | 98.8 | 70.2 | 81.6 | Solyc05g005740.2.1 | - | - | - | - | - | - | Name=IPR018519;Note=Potassium uptake protein%2C kup | |
| solcap_snp_sl_69081 | I | SL2.40ch05 | 626924 | exon | R | A | G | - | ttT | ttC | F | F | sSNP | Solyc05g005810.2.1 | # | TATCCTTTCAAGGTAGACGGATACGGGGCGTCACCAGACGCGTGGCATTT[T/C]CAGACTAATTTACCAACACCAACACCAACACCAACTGAGTTATACGAACA | 0.23 | 0.38 | 0 | 0 | 0 | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TC | TT | CC | CC | CC | TC | CC | -- | -- | - | - | - | - | - | - | - | - | - | - | noCOG | 1.00E-122 | 96.0 | 57.5 | 61.7 | - | - | - | - | - | Solyc05g005810.2.1 | - | - | - | - | - | - | # | |
| CL001269-0638 | I | SL2.40ch05 | 684857 | intron | W | A | T | + | # | # | # | # | iSNP | Solyc05g005880.2.1 | # | GAGCTGAAACTGCATTCTACATATCTTGAGNTTAAAACCAGAAGATCGAAAAATCTTCNTTACTTTCTTAAACTTTGTGTCAAGTCAAATNCGGACAAAC[A/T]AATCGAAACAAGGGGAGTTATTGTTAGGTGGGTATGTAGGATCATGGCTTCTATATGCATCACAGCCTTATCCCAAATTAAAC | 0.12 | 0.38 | 0 | 0 | 0 | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | TA | AA | TT | TT | AA | AA | AA | AA | AA | - | - | - | gi|330318670|gb|AEC10995.1| 30S ribosomal protein s13 [Camellia sinensis] | 30S ribosomal protein s13 | 1.00E-65 | 98.2 | 70.8 | 81.0 | J | KOG3311 | Ribosomal protein S18 | 3.00E-58 | 117.3 | 67.9 | 76.2 | K02952_osa-4333848 | 3.00E-36 | 120.8 | 45.8 | 58.3 | Solyc05g005880.2.1 | 3BBN | gi|188036214|pdb|3BBN|M Chain M, Homology Model For The Spinach Chloroplast 30s Subunit Fitted To 9.4a Cryo-Em Map Of The 70s Chlororibosome | 2.00E-42 | 86.3 | 51.2 | 64.9 | Name=IPR001892;Note=Ribosomal protein S13 |
| CL001269-0981 | I | SL2.40ch05 | 685183 | exon | Y | C | T | + | tgC | tgT | C | C | sSNP | Solyc05g005880.2.1 | # | TGTGGTGTTGGCATCAGAGGAGATTCAATGCTCTTGCCATTAGGAGGTTGAAGGAGATTCAGTGCTATAGAGGAGTAAGGCACATCCAAGGATTGCCTTG[T/C]AGAGGACAA | 0.14 | 0.47 | 0 | 0 | 0 | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | TT | TT | TT | 3.80E-37 | Ribosomal_S13 | Ribosomal protein S13/S18 | gi|330318670|gb|AEC10995.1| 30S ribosomal protein s13 [Camellia sinensis] | 30S ribosomal protein s13 | 1.00E-65 | 98.2 | 70.8 | 81.0 | J | KOG3311 | Ribosomal protein S18 | 3.00E-58 | 117.3 | 67.9 | 76.2 | K02952_osa-4333848 | 3.00E-36 | 120.8 | 45.8 | 58.3 | Solyc05g005880.2.1 | 3BBN | gi|188036214|pdb|3BBN|M Chain M, Homology Model For The Spinach Chloroplast 30s Subunit Fitted To 9.4a Cryo-Em Map Of The 70s Chlororibosome | 2.00E-42 | 86.3 | 51.2 | 64.9 | Name=IPR001892;Note=Ribosomal protein S13 |
| solcap_snp_sl_15899 | I | SL2.40ch05 | 708484 | exon | Y | C | T | - | ctG | ctA | L | L | sSNP | Solyc05g005920.2.1 | # | TTTTTCTGGTTGCTTTCTTTCTTCAGTTTTCTAAACTTCTTATATTTTCT[A/G]CTTGTCTGTCGATTTTATGAATCTCTCAATGATGGGAGGAGTAGGTCATC | 0.12 | 0.38 | 0 | 0 | 0 | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | AG | GG | AA | AA | GG | GG | GG | GG | GG | 2.70E-05 | MFS_1 | Major Facilitator Superfamily | - | - | - | - | - | - | E | KOG1237 | H+/oligopeptide symporter | 1.00E-157 | 104.1 | 47.3 | 68.8 | - | - | - | - | - | Solyc05g005920.2.1 | 2XUT | gi|315113224|pdb|2XUT|A Chain A, Crystal Structure Of A Proton Dependent Oligopeptide (Pot) Family Transporter.gi|315113225|pdb|2XUT|B Chain B, Crystal Structure Of A Proton Dependent Oligopeptide (Pot) Family Transporter.gi|315113226|pdb|2XUT|C Chain C, Crystal Structure Of A Proton Dependent Oligopeptide (Pot) Family Transporter | 5.00E-12 | 89.9 | 19.9 | 34.6 | Name=IPR016196;Note=Major facilitator superfamily%2C general substrate transporter |
| solcap_snp_sl_69075 | I | SL2.40ch05 | 712311 | exon | M | A | C | - | gcT | gcG | A | A | sSNP | Solyc05g005930.1.1 | # | CCTGATTTGTTGATTTACGACATATTGCAGCAATGGGCTGAAGATGTGGC[T/G]ACTGAACTAAACATTCCAGCAGTTAAGCTTTTGACTTCGGGTGTTGCTGT | 0.3 | 0.22 | 0 | 0 | 0 | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TG | TT | GG | GG | GG | GG | GG | GG | GG | 1.60E-22 | UDPGT | UDP-glucoronosyl and UDP-glucosyl transferase | gi|209954733|dbj|BAG80557.1| UDP-glucose:glucosyltransferase [Lycium barbarum] | UDP-glucose:glucosyltransferase | 0 | 101.8 | 80.3 | 88.1 | GC | KOG1192 | UDP-glucuronosyl and UDP-glucosyl transferase | 7.00E-54 | 104.5 | 30.9 | 51.6 | K08237_ath-AT1G01420 | 5.00E-41 | 107.8 | 30.5 | 49.6 | Solyc05g005930.1.1 | 2VCE | gi|158431183|pdb|2VCE|A Chain A, Characterization And Engineering Of The Bifunctional N- And O-Glucosyltransferase Involved In Xenobiotic Metabolism In Plantsgi|158431184|pdb|2VCH|A Chain A, Characterization And Engineering Of The Bifunctional N- And O-Glucosyltransferase Involved In Xenobiotic Metabolism In Plantsgi|161761112|pdb|2VG8|A Chain A, Characterization And Engineering Of The Bifunctional N- And O-Glucosyltransferase Involved In Xenobiotic Metabolism In Plants | 2.00E-42 | 107.6 | 31.6 | 48.7 | Name=PS00375;length=44;Note=UDPGT;Dbxref=PROSITE:PS00375;database=PROSITE |
| solcap_snp_sl_15875 | I | SL2.40ch05 | 736089 | exon | Y | T | C | - | ccA | ccG | P | P | sSNP | Solyc05g005990.2.1 | # | CCTTGTTCAGTAGCATTTGGTGCTGATCAATTAGAGAACAAACGAAATCC[A/G]GATAATGAGAGAGTTATGGATACCTATTTCAACTGGTTTTATGCTAGTGT | 0.12 | 0.38 | 0 | 0 | 0 | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AG | AA | GG | GG | AA | AA | AA | AA | AA | 2.80E-41 | PTR2 | POT family | - | - | - | - | - | - | E | KOG1237 | H+/oligopeptide symporter | 1.00E-85 | 132.2 | 32.0 | 47.9 | - | - | - | - | - | Solyc05g005990.2.1 | - | - | - | - | - | - | Name=IPR016196;Note=Major facilitator superfamily%2C general substrate transporter |
| solcap_snp_sl_69068 | I | SL2.40ch05 | 787109 | exon | Y | C | T | - | Gct | Act | A | T | cSNP | Solyc05g006050.2.1 | # | TTTATCCACAGGTACGAGTCATGACTCGTGCTAGTACTACTACTACTACT[A/G]CTGTAGCATCTAGTGACTGTTCGTCCTCATCATCATCTTCTTCCACATCT | 0.1 | 0.44 | 0 | 0 | 0 | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | -- | GG | AA | AA | -- | GG | -- | GG | GG | - | - | - | gi|25989347|gb|AAL47479.1| cyclin D1 [Helianthus tuberosus] | cyclin D1 | 1.00E-115 | 93.5 | 66.2 | 75.7 | D | KOG0656 | G1/S-specific cyclin D | 1.00E-101 | 100.6 | 60.5 | 72.7 | K10151_pop-POPTR_804326 | 6.00E-48 | 84.6 | 33.5 | 47.2 | Solyc05g006050.2.1 | 3DDQ | gi|194368796|pdb|3DDQ|B Chain B, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX With The Inhibitor Roscovitinegi|194368798|pdb|3DDQ|D Chain D, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX With The Inhibitor Roscovitine | 2.00E-11 | 79.8 | 19.6 | 28.2 | Name=IPR006670;Note=Cyclin |
| solcap_snp_sl_69059 | I | SL2.40ch05 | 819237 | exon | K | G | T | + | gaG | gaT | E | D | cSNP | Solyc05g006090.2.1 | # | TTCCTAACAACAAAGAAACCATCTCTCTCTTCTTTCATTTCTGTAGTGAA[A/C]TCAGAATTCTGCGATGGAGAACTATCTCCACTATGTTTTTTGGACGAAAA | 0.3 | 0.22 | 0 | 0 | 0 | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | AC | CC | AA | AA | AA | AA | AA | AA | AA | - | - | - | gi|255588182|ref|XP_002534525.1| nuclease, putative [Ricinus communis]gi|223525106|gb|EEF27855.1| nuclease, putative [Ricinus communis] | nuclease, putative | 3.00E-95 | 71.4 | 47.1 | 57.8 | - | noCOG | 2.00E-78 | 93.5 | 43.9 | 62.1 | - | - | - | - | - | Solyc05g006090.2.1 | 3HST | gi|295321673|pdb|3HST|B Chain B, N-Terminal Rnase H Domain Of Rv2228c From Mycobacterium Tube As A Fusion Protein With Maltose Binding Proteingi|295321675|pdb|3HST|D Chain D, N-Terminal Rnase H Domain Of Rv2228c From Mycobacterium Tube As A Fusion Protein With Maltose Binding Protein | 4.00E-19 | 38.4 | 14.4 | 19.6 | Name=IPR002156;Note=Ribonuclease H | |
| SGN-U577019_snp211_solcap_snp_sl_52680 | I | SL2.40ch05 | 1110118 | genome | Y | T | C | # | # | # | # | # | gSNP | # | # | CAGGATGGATAAGGTTTGCATCTATATTGCTTACAATGGCAAATGGACTA[T/C]AGATAACAAGTATTTGGATCATGAGATCAAGCTAATTCTTGTGAATGATG | 0.33 | 0 | 0 | 0 | 0 | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TC | CC | CC | CC | CC | CC | CC | CC | CC | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | # |
| SGN-U565001_snp1586_solcap_snp_sl_52697 | I | SL2.40ch05 | 1156799 | 3utr | Y | T | C | - | # | # | # | # | uSNP | Solyc05g006540.2.1 | # | TCTGGGAACAAAATTTAGAATGACATTCTACAAATTTTCCGAGCTGTTAG[T/C]TGGATCATTTATTCAGTACGAGAAGCTAGAAAAATCTATGGTATCACTGT | 0.33 | 0 | 0 | 0 | 0 | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TC | CC | CC | CC | CC | CC | CC | CC | CC | - | - | - | gi|302399131|gb|ADL36860.1| WRKY domain class transcription factor [Malus x domestica] | WRKY domain class transcription factor | 0 | 104.3 | 63.5 | 76.4 | B | KOG4204 | Histone deacetylase complex, SIN3 component | 0 | 101.9 | 51.7 | 67.0 | K11644_rcu-RCOM_0699610 | 0 | 106.8 | 62.3 | 76.0 | Solyc05g006540.2.1 | 2RMR | gi|166007193|pdb|2RMR|A Chain A, Solution Structure Of Msin3a Pah1 Domaingi|166007194|pdb|2RMS|A Chain A, Solution Structure Of The Msin3a Pah1-Sap25 Sid Complex | 5.00E-18 | 5.2 | 3.2 | 3.8 | Name=IPR003822;Note=Paired amphipathic helix |
| solcap_snp_sl_52699 | I | SL2.40ch05 | 1184835 | exon | Y | T | C | + | gTt | gCt | V | A | cSNP | Solyc05g006550.2.1 | # | GTCCGACCGTGATACTCTCGCCGTTGCTACGAATGAGCTGGAGTCTATAG[T/C]TAGAAGTCTTAACAGTGAAGGTTTTAGTGCATTTTTGACTTGTATTTCGA | 0.3 | 0.22 | 0 | 0 | 0 | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TC | TT | CC | CC | CC | CC | CC | CC | CC | 0.0002 | Adaptin_N | Adaptin N terminal region | gi|255558336|ref|XP_002520195.1| Microtubule-associated protein TORTIFOLIA1, putative [Ricinus communis]gi|223540687|gb|EEF42250.1| Microtubule-associated protein TORTIFOLIA1, putative [Ricinus communis] | Microtubule-associated protein TORTIFOLIA1, putative | 1.00E-148 | 98.5 | 44.7 | 60.2 | - | noCOG | 1.00E-124 | 93.7 | 38.9 | 53.6 | - | - | - | - | - | Solyc05g006550.2.1 | - | - | - | - | - | - | Name=IPR016024;Note=Armadillo-type fold | |
| SGN-U567719_snp239_solcap_snp_sl_52710 | I | SL2.40ch05 | 1211190 | exon | R | A | G | + | Agg | Ggg | R | G | cSNP | Solyc05g006580.2.1 | # | ACGCAATCTATAATGGCGAAGCGGAACAAAGAGATGAAAGCGGAATCATA[A/G]GGCGTAGACATCTGATGAGCTTTAAGGAGACGCCTATTGGTACAAATATC | 0.33 | 0 | 0 | 0 | 0 | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AG | GG | GG | GG | GG | GG | GG | GG | GG | - | - | - | gi|18409420|ref|NP_564982.1| uncharacterized protein [Arabidopsis thaliana]gi|119360057|gb|ABL66757.1| At1g69980 [Arabidopsis thaliana]gi|332196884|gb|AEE35005.1| uncharacterized protein [Arabidopsis thaliana] | uncharacterized protein | 6.00E-42 | 90.3 | 47.6 | 61.7 | - | noCOG | 5.00E-44 | 151.1 | 47.6 | 61.7 | - | - | - | - | - | Solyc05g006580.2.1 | - | - | - | - | - | - | # | |
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