| HMMscan | nr | KOG | KEGG | PDB | ITAG2.3 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| SNP ID | Array type ( I: Infinium G: Goldengate) |
Chromosome | Position on the SL2.40 | Location | IUPAC | SNP genotype (Heinz 1706-BG) | SNP genotype (Mutation) | Strand | Codon (Heinz 1706-BG) | Codon (Mutation) | Amino acid residue (Heinz 1706-BG) | Amino acid residue (Mutation) | SNP category | ITAG gene model | Functional site | Flanking sequences on SNP | HZ (The 40 lines) | HZ (cluster 1) | HZ (cluster 2) | HZ (cluster 3) | HZ (cluster 4) | San Marzano | Rutgers | Ponderosa | Aichi First | S. lycopersicum var cerasiforme (WIR25/30) | S. lycopersicum var cerasiforme (TOMJPF00009) | Earliana | Best Of All | Money Maker | Ailsa Craig | LA925 | Fruit | Rio Grande | Marglobe | Heinz 1706-BG | Tomato Chuukanbohon Nou 9 | Furikoma | Tomato Chuukanbohon Nou 11 | Reika | Momotaro 8 | Labell | Matrix | Geronimo | Micro-Tom_AM | Micro-Tom TGRC (LA3911) | Micro-Tom_MM | Micro-Tom | Micro-Tom NBRP (TOMJPF00001) | M82_MM | M82 | Regina | Sweet100 | S. pimpinellifolium (TOMJPF00012) | S. pimpinellifolium (LS1513) | S. pimpinellifolium (PI344102) | S. chilense (LA1958) | S. peruvianum (WIR2020) | S. peruvianum (TOMJPF00010) | S. pennellii (TOMJPF00008) | S. pennellii (LA716) | E-value | Model | HMMscan definition | nr definition | Product (KDRI) | E-value | Length% | Identity% | Positive% | KOG id | KOG No. | KOG definition | E-value | Length% | Identity% | Positive% | KO | E-value | Length% | Identity% | Positive% | Gene name [structural model (tomato)] (Structures with links can be browsed by Jmol.) |
PDB id | PDB definition | E-value | Length% | Identity% | Positive% | ITAG (interpro) |
| solcap_snp_sl_39981 | I | SL2.40ch06 | 56871 | 5utr | Y | T | C | + | # | # | # | # | rSNP | Solyc06g005070.1.1 | # | ACAACGACTTTTCTCTTCCTCACGGAGGCAACAATAACCTGTGTCAATCT[A/G]ATTAACGGACTTCCTCCTGGTTCTACTTTTCTGTAAAATGGAGATCCAAC | 0.36 | 0.12 | 0.48 | 0 | 0 | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | GG | AA | GG | AA | AA | AA | AA | AA | AA | GG | GG | GG | AG | GG | GG | GG | GG | - | - | - | gi|255552447|ref|XP_002517267.1| nitrate transporter, putative [Ricinus communis]gi|223543530|gb|EEF45060.1| nitrate transporter, putative [Ricinus communis] | nitrate transporter, putative | 1.00E-120 | 197.1 | 66.0 | 79.0 | E | KOG1237 | H+/oligopeptide symporter | 2.00E-88 | 189.2 | 49.8 | 67.6 | - | - | - | - | - | Solyc06g005070.1.1 | - | - | - | - | - | - | Name=SSF103473;length=240;Note=MFS general substrate transporter;Dbxref=SUPERFAMILY:SSF103473;database=SUPERFAMILY |
| solcap_snp_sl_23099 | I | SL2.40ch06 | 57470 | exon | R | G | A | + | atG | atA | M | I | cSNP | Solyc06g005070.1.1 | # | GCCTGTTGGATTGTAAAGCTGCTTACATGTGAATGTGAAGCAAAATGTAA[T/C]ATCCCTGCAGCCCAAATCGGCAGCATCCTAAGGATGCATTTTAGCTCTTC | 0.29 | 0.47 | 0.48 | 0 | 0 | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | TT | CC | TT | CC | CC | CC | CC | CC | CC | CC | CC | CC | TT | TT | TT | TT | TT | 5.30E-39 | PTR2 | POT family | gi|255552447|ref|XP_002517267.1| nitrate transporter, putative [Ricinus communis]gi|223543530|gb|EEF45060.1| nitrate transporter, putative [Ricinus communis] | nitrate transporter, putative | 1.00E-120 | 197.1 | 66.0 | 79.0 | E | KOG1237 | H+/oligopeptide symporter | 2.00E-88 | 189.2 | 49.8 | 67.6 | - | - | - | - | - | Solyc06g005070.1.1 | - | - | - | - | - | - | Name=SSF103473;length=240;Note=MFS general substrate transporter;Dbxref=SUPERFAMILY:SSF103473;database=SUPERFAMILY |
| solcap_snp_sl_23098 | I | SL2.40ch06 | 57609 | exon | Y | T | C | + | Tta | Cta | L | L | sSNP | Solyc06g005070.1.1 | # | TCCTGTAAATCGACGAGCAAAAGGAACAAAGAAGCGCTCATAAAGCGCTA[A/G]GCCAATGAGCACCGTTAGGACACTAAAAATAGACATGCTGGCTGGAGGTA | 0.29 | 0.47 | 0.48 | 0 | 0 | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | GG | AA | GG | AA | AA | AA | AA | AA | AA | AA | AA | AA | GG | GG | GG | GG | GG | 5.30E-39 | PTR2 | POT family | gi|255552447|ref|XP_002517267.1| nitrate transporter, putative [Ricinus communis]gi|223543530|gb|EEF45060.1| nitrate transporter, putative [Ricinus communis] | nitrate transporter, putative | 1.00E-120 | 197.1 | 66.0 | 79.0 | E | KOG1237 | H+/oligopeptide symporter | 2.00E-88 | 189.2 | 49.8 | 67.6 | - | - | - | - | - | Solyc06g005070.1.1 | - | - | - | - | - | - | Name=SSF103473;length=240;Note=MFS general substrate transporter;Dbxref=SUPERFAMILY:SSF103473;database=SUPERFAMILY |
| solcap_snp_sl_23097 | I | SL2.40ch06 | 57785 | exon | W | A | T | + | ctA | ctT | L | L | sSNP | Solyc06g005070.1.1 | # | GGAACCAACCAGAAGACACTAATAGGAATGACATGAGTCATTGGTTGATC[A/T]AGTAAGTTATGATCTGCAGCTGCTTTTTTACGCTTGATCTCAGCTAGTGC | 0.23 | 0.5 | 0.48 | 0 | 0 | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | AA | TT | AA | TT | TT | TT | TT | TT | TT | TT | TT | TT | AA | AA | AA | -- | -- | 5.30E-39 | PTR2 | POT family | gi|255552447|ref|XP_002517267.1| nitrate transporter, putative [Ricinus communis]gi|223543530|gb|EEF45060.1| nitrate transporter, putative [Ricinus communis] | nitrate transporter, putative | 1.00E-120 | 197.1 | 66.0 | 79.0 | E | KOG1237 | H+/oligopeptide symporter | 2.00E-88 | 189.2 | 49.8 | 67.6 | - | - | - | - | - | Solyc06g005070.1.1 | - | - | - | - | - | - | Name=SSF103473;length=240;Note=MFS general substrate transporter;Dbxref=SUPERFAMILY:SSF103473;database=SUPERFAMILY |
| solcap_snp_sl_23096 | I | SL2.40ch06 | 57836 | exon | K | T | G | + | ccT | ccG | P | P | sSNP | Solyc06g005070.1.1 | # | AGGTGTCCAACACTCATGAAGACTTCAGCTACGCCGTGAAGGCAATACTG[A/C]GGAACCAACCAGAAGACACTAATAGGAATGACATGAGTCATTGGTTGATC | 0.29 | 0.47 | 0.48 | 0 | 0 | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | CC | AA | CC | AA | AA | AA | AA | AA | AA | AA | AA | AA | CC | CC | CC | CC | CC | 5.30E-39 | PTR2 | POT family | gi|255552447|ref|XP_002517267.1| nitrate transporter, putative [Ricinus communis]gi|223543530|gb|EEF45060.1| nitrate transporter, putative [Ricinus communis] | nitrate transporter, putative | 1.00E-120 | 197.1 | 66.0 | 79.0 | E | KOG1237 | H+/oligopeptide symporter | 2.00E-88 | 189.2 | 49.8 | 67.6 | - | - | - | - | - | Solyc06g005070.1.1 | - | - | - | - | - | - | Name=SSF103473;length=240;Note=MFS general substrate transporter;Dbxref=SUPERFAMILY:SSF103473;database=SUPERFAMILY |
| solcap_snp_sl_26826 | I | SL2.40ch06 | 60367 | exon | R | A | G | - | Tat | Cat | Y | H | cSNP | Solyc06g005080.2.1 | # | TGCCAGAAGAAGCAGAAGAATCTGAATCCTGGGAGATAAAGCCACATAAT[T/C]ATCCTAGTCAGAGAAGCCTTTCTTTGGCTGTGTGATTTTGTCATCTGTTA | 0.38 | 0 | 0.48 | 0 | 0 | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | CC | TT | CC | TT | TT | TT | TT | TT | TT | CC | CC | CC | CC | CC | CC | CC | CC | - | - | - | gi|255553905|ref|XP_002517993.1| vacuolar membrane protein pep3, putative [Ricinus communis]gi|223542975|gb|EEF44511.1| vacuolar membrane protein pep3, putative [Ricinus communis] | vacuolar membrane protein pep3, putative | 0 | 92.5 | 76.5 | 84.6 | U | KOG2034 | Vacuolar sorting protein PEP3/VPS18 | 0 | 93.2 | 72.3 | 82.6 | - | - | - | - | - | Solyc06g005080.2.1 | - | - | - | - | - | - | # |
| solcap_snp_sl_23088 | I | SL2.40ch06 | 95217 | exon | R | G | A | - | gtC | gtT | V | V | sSNP | Solyc06g005080.2.1 | # | GCCACAAAAGGCCGTGGAGCCATTACATGCATGGCGACTGGCAATGATGT[T/C]ATCGTTCTTGGAACCAACAAAGGCTGGGTGATCAGACATGACTTTGGAGT | 0.02 | 0.12 | 0 | 0 | 0 | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | TC | CC | CC | CC | - | - | - | gi|255553905|ref|XP_002517993.1| vacuolar membrane protein pep3, putative [Ricinus communis]gi|223542975|gb|EEF44511.1| vacuolar membrane protein pep3, putative [Ricinus communis] | vacuolar membrane protein pep3, putative | 0 | 92.5 | 76.5 | 84.6 | U | KOG2034 | Vacuolar sorting protein PEP3/VPS18 | 0 | 93.2 | 72.3 | 82.6 | - | - | - | - | - | Solyc06g005080.2.1 | - | - | - | - | - | - | # |
| solcap_snp_sl_23083 | I | SL2.40ch06 | 166367 | exon | Y | C | T | - | Gtt | Att | V | I | cSNP | Solyc06g005140.2.1 | # | AAATGGAGAAAAGGATTTCCAGGAAGGGTCGAACTGCATATGCTTCTCTC[A/G]TTAGTTTGCATACAAATCTACAGAGCAAGGATGAAGTTTTTCGAATATGG | 0.22 | 0.47 | 0.48 | 0 | 0 | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | AA | GG | AA | GG | GG | GG | GG | GG | GG | GG | GG | GG | AA | AA | AA | GG | GG | 4.30E-25 | PPR | PPR repeat | gi|297814019|ref|XP_002874893.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata]gi|297320730|gb|EFH51152.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] | pentatricopeptide repeat-containing protein | 1.00E-176 | 101.0 | 58.3 | 76.7 | R | KOG4197 | FOG: PPR repeat | 1.00E-176 | 102.3 | 56.5 | 73.7 | - | - | - | - | - | Solyc06g005140.2.1 | - | - | - | - | - | - | Name=IPR002885;Note=Pentatricopeptide repeat |
| solcap_snp_sl_23077 | I | SL2.40ch06 | 193649 | exon | R | A | G | + | agA | agG | R | R | sSNP | Solyc06g005170.2.1 | # | ACATCTATGGCAGCAGTGTAATCTGAAGAGTTCAACAAAAGCTCCGGTGC[T/C]CTGTACCATCTGGTTACTACATATTCTGTCATATTCTCGTTCTCTACGTT | 0.29 | 0.47 | 0.48 | 0 | 0 | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | CC | TT | CC | TT | TT | TT | TT | TT | TT | TT | TT | TT | CC | CC | CC | CC | CC | 1.30E-74 | Pkinase | Protein kinase domain | gi|350538809|ref|NP_001234360.1| mitogen-activated protein kinase 3 [Solanum lycopersicum]gi|30171845|gb|AAP20421.1| mitogen-activated protein kinase 3 [Solanum lycopersicum]gi|262176921|gb|ACY27517.1| mitogen-activated protein kinase 3 [Solanum lycopersicum] | mitogen-activated protein kinase 3 | 0 | 100.0 | 100.0 | 100.0 | T | KOG0660 | Mitogen-activated protein kinase | 0 | 99.2 | 80.2 | 89.0 | K04371_vvi-100263976 | 0 | 100.5 | 82.8 | 90.9 | Solyc06g005170.2.1 | 1WZY | gi|85543925|pdb|1WZY|A Chain A, Crystal Structure Of Human Erk2 Complexed With A Pyrazolopyridazine Derivativegi|158428220|pdb|2E14|A Chain A, The Structure Of Erk2 In Complex With Fr148083 | 7.00E-94 | 98.7 | 44.5 | 64.9 | Name=IPR008271;Note=Serine/threonine protein kinase%2C active site |
| solcap_snp_sl_23075 | I | SL2.40ch06 | 195172 | 3utr | R | G | A | + | # | # | # | # | uSNP | Solyc06g005170.2.1 | # | ATGAGTGGAAGACGTACAAACGTTTTTGTTGGTGGGAGATGACATGTATC[T/C]TATGGAATAGTCGAGTGAACACAAGCTAGCCCGAACACCACCATAATTAA | 0.07 | 0.3 | 0 | 0 | 0 | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | TT | TC | CC | CC | CC | - | - | - | gi|350538809|ref|NP_001234360.1| mitogen-activated protein kinase 3 [Solanum lycopersicum]gi|30171845|gb|AAP20421.1| mitogen-activated protein kinase 3 [Solanum lycopersicum]gi|262176921|gb|ACY27517.1| mitogen-activated protein kinase 3 [Solanum lycopersicum] | mitogen-activated protein kinase 3 | 0 | 100.0 | 100.0 | 100.0 | T | KOG0660 | Mitogen-activated protein kinase | 0 | 99.2 | 80.2 | 89.0 | K04371_vvi-100263976 | 0 | 100.5 | 82.8 | 90.9 | Solyc06g005170.2.1 | 1WZY | gi|85543925|pdb|1WZY|A Chain A, Crystal Structure Of Human Erk2 Complexed With A Pyrazolopyridazine Derivativegi|158428220|pdb|2E14|A Chain A, The Structure Of Erk2 In Complex With Fr148083 | 7.00E-94 | 98.7 | 44.5 | 64.9 | Name=IPR008271;Note=Serine/threonine protein kinase%2C active site |
| solcap_snp_sl_26810 | I | SL2.40ch06 | 207988 | exon | Y | C | T | + | gaC | gaT | D | D | sSNP | Solyc06g005190.2.1 | # | CTGTCCAGAGGTGCCGGAATAGTGGGGTTCTCAGAAGTATAGATATGAGG[A/G]TCTGCTCCTACATGCTGCTTAACAGGTTCTAAAGTGTCTATCTTACCTTT | 0.38 | 0 | 0.48 | 0 | 0 | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | AA | GG | AA | GG | GG | GG | GG | GG | GG | AA | AA | AA | AA | AA | AA | AA | AA | - | - | - | gi|297819084|ref|XP_002877425.1| RNA recognition motif-containing protein [Arabidopsis lyrata subsp. lyrata]gi|297323263|gb|EFH53684.1| RNA recognition motif-containing protein [Arabidopsis lyrata subsp. lyrata] | RNA recognition motif-containing protein | 0 | 97.1 | 44.8 | 59.2 | K | KOG2068 | MOT2 transcription factor | 1.00E-122 | 31.5 | 21.7 | 25.0 | K10643_vvi-100267264 | 0 | 100.3 | 53.4 | 67.7 | Solyc06g005190.2.1 | 2CPI | gi|159163841|pdb|2CPI|A Chain A, Solution Structure Of The Rna Recognition Motif Of Cnot4 | 6.00E-18 | 10.9 | 4.6 | 6.5 | Name=IPR003954;Note=RNA recognition%2C region 1 |
| solcap_snp_sl_23069 | I | SL2.40ch06 | 208350 | exon | W | T | A | + | cTg | cAg | L | Q | cSNP | Solyc06g005190.2.1 | # | TTAGCAAATCATTCTCCATTTCGGAAGTAGTAACTTGTGTTACTTTGCTC[A/T]GTGTATCCAATCTCAAGTCAGACTTCTCTCTTGTAATACAAATCTCATCT | 0.38 | 0 | 0.48 | 0 | 0 | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | TT | AA | TT | AA | AA | AA | AA | AA | AA | TT | TT | TT | TT | TT | TT | TT | TT | - | - | - | gi|297819084|ref|XP_002877425.1| RNA recognition motif-containing protein [Arabidopsis lyrata subsp. lyrata]gi|297323263|gb|EFH53684.1| RNA recognition motif-containing protein [Arabidopsis lyrata subsp. lyrata] | RNA recognition motif-containing protein | 0 | 97.1 | 44.8 | 59.2 | K | KOG2068 | MOT2 transcription factor | 1.00E-122 | 31.5 | 21.7 | 25.0 | K10643_vvi-100267264 | 0 | 100.3 | 53.4 | 67.7 | Solyc06g005190.2.1 | 2CPI | gi|159163841|pdb|2CPI|A Chain A, Solution Structure Of The Rna Recognition Motif Of Cnot4 | 6.00E-18 | 10.9 | 4.6 | 6.5 | Name=IPR003954;Note=RNA recognition%2C region 1 |
| solcap_snp_sl_23068 | I | SL2.40ch06 | 208470 | exon | Y | C | T | + | cCt | cTt | P | L | cSNP | Solyc06g005190.2.1 | # | TAGTCAGCTGAGAGGAATACCAACAAGGCTGAGCTGGGGAGTGCAAAGAA[A/G]GGGGAAGATTTGGTGAATAAACTTTGTCAATAACTACTTCGGGATCCCTA | 0.29 | 0.47 | 0.48 | 0 | 0 | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | AA | GG | AA | GG | GG | GG | GG | GG | GG | GG | GG | GG | AA | AA | AA | AA | AA | - | - | - | gi|297819084|ref|XP_002877425.1| RNA recognition motif-containing protein [Arabidopsis lyrata subsp. lyrata]gi|297323263|gb|EFH53684.1| RNA recognition motif-containing protein [Arabidopsis lyrata subsp. lyrata] | RNA recognition motif-containing protein | 0 | 97.1 | 44.8 | 59.2 | K | KOG2068 | MOT2 transcription factor | 1.00E-122 | 31.5 | 21.7 | 25.0 | K10643_vvi-100267264 | 0 | 100.3 | 53.4 | 67.7 | Solyc06g005190.2.1 | 2CPI | gi|159163841|pdb|2CPI|A Chain A, Solution Structure Of The Rna Recognition Motif Of Cnot4 | 6.00E-18 | 10.9 | 4.6 | 6.5 | Name=IPR003954;Note=RNA recognition%2C region 1 |
| solcap_snp_sl_23066 | I | SL2.40ch06 | 208588 | exon | K | G | T | + | tcG | tcT | S | S | sSNP | Solyc06g005190.2.1 | # | GCCACGCAATTTGATACATTCTCCGGGTATCCATTAGTCAATGATTCACG[A/C]GAAGGCTGTGATACTGAATCAGTTCTCCTGTCTAACTGCATATTGGCACT | 0.29 | 0.47 | 0.48 | 0 | 0 | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | AA | CC | AA | CC | CC | CC | CC | CC | CC | CC | CC | CC | AA | AA | AA | AA | AA | - | - | - | gi|297819084|ref|XP_002877425.1| RNA recognition motif-containing protein [Arabidopsis lyrata subsp. lyrata]gi|297323263|gb|EFH53684.1| RNA recognition motif-containing protein [Arabidopsis lyrata subsp. lyrata] | RNA recognition motif-containing protein | 0 | 97.1 | 44.8 | 59.2 | K | KOG2068 | MOT2 transcription factor | 1.00E-122 | 31.5 | 21.7 | 25.0 | K10643_vvi-100267264 | 0 | 100.3 | 53.4 | 67.7 | Solyc06g005190.2.1 | 2CPI | gi|159163841|pdb|2CPI|A Chain A, Solution Structure Of The Rna Recognition Motif Of Cnot4 | 6.00E-18 | 10.9 | 4.6 | 6.5 | Name=IPR003954;Note=RNA recognition%2C region 1 |
| solcap_snp_sl_23065 | I | SL2.40ch06 | 208813 | exon | R | A | G | + | gaA | gaG | E | E | sSNP | Solyc06g005190.2.1 | # | TCATCAGTTTCTCCCAACAACTTGGCAAGGTTCTGAGGAGAAGTTAATGA[T/C]TCATTCCAAGGATCAAAATCCAGGGACAAAATATTAGATATAATACTGTT | 0.29 | 0.47 | 0.48 | 0 | 0 | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | CC | TT | CC | TT | TT | TT | TT | TT | TT | TT | TT | TT | CC | CC | CC | CC | CC | - | - | - | gi|297819084|ref|XP_002877425.1| RNA recognition motif-containing protein [Arabidopsis lyrata subsp. lyrata]gi|297323263|gb|EFH53684.1| RNA recognition motif-containing protein [Arabidopsis lyrata subsp. lyrata] | RNA recognition motif-containing protein | 0 | 97.1 | 44.8 | 59.2 | K | KOG2068 | MOT2 transcription factor | 1.00E-122 | 31.5 | 21.7 | 25.0 | K10643_vvi-100267264 | 0 | 100.3 | 53.4 | 67.7 | Solyc06g005190.2.1 | 2CPI | gi|159163841|pdb|2CPI|A Chain A, Solution Structure Of The Rna Recognition Motif Of Cnot4 | 6.00E-18 | 10.9 | 4.6 | 6.5 | Name=IPR003954;Note=RNA recognition%2C region 1 |
| solcap_snp_sl_23063 | I | SL2.40ch06 | 209092 | exon | Y | T | C | + | aaT | aaC | N | N | sSNP | Solyc06g005190.2.1 | # | TTAGAAGAGAGATGAGAAAAGCTGTTGCCAAAACCAACTGTTTCCTCATT[A/G]TTAGCCATGGAAAAACCATTACGAGTACCAATATAATCAAGTTTATCATT | 0.16 | 0.3 | 0.48 | 0 | 0 | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | GG | AA | GG | AA | AA | AA | AA | AA | AA | AA | AA | AA | AG | AG | AG | AA | AA | - | - | - | gi|297819084|ref|XP_002877425.1| RNA recognition motif-containing protein [Arabidopsis lyrata subsp. lyrata]gi|297323263|gb|EFH53684.1| RNA recognition motif-containing protein [Arabidopsis lyrata subsp. lyrata] | RNA recognition motif-containing protein | 0 | 97.1 | 44.8 | 59.2 | K | KOG2068 | MOT2 transcription factor | 1.00E-122 | 31.5 | 21.7 | 25.0 | K10643_vvi-100267264 | 0 | 100.3 | 53.4 | 67.7 | Solyc06g005190.2.1 | 2CPI | gi|159163841|pdb|2CPI|A Chain A, Solution Structure Of The Rna Recognition Motif Of Cnot4 | 6.00E-18 | 10.9 | 4.6 | 6.5 | Name=IPR003954;Note=RNA recognition%2C region 1 |
| solcap_snp_sl_23062 | I | SL2.40ch06 | 209710 | exon | W | A | T | + | Act | Tct | T | S | cSNP | Solyc06g005190.2.1 | # | AGCTACAGATCTTTGCATCAGTAATTGAAGCCTTCCCTCATTTTGTAAAG[A/T]ATTTGATTGTGGAGGACAACTTGAAGACATGTCCAAGTTTGAGAGATGAA | 0.05 | 0.24 | 0 | 0 | 0 | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | AA | -- | TT | TT | - | - | - | gi|297819084|ref|XP_002877425.1| RNA recognition motif-containing protein [Arabidopsis lyrata subsp. lyrata]gi|297323263|gb|EFH53684.1| RNA recognition motif-containing protein [Arabidopsis lyrata subsp. lyrata] | RNA recognition motif-containing protein | 0 | 97.1 | 44.8 | 59.2 | K | KOG2068 | MOT2 transcription factor | 1.00E-122 | 31.5 | 21.7 | 25.0 | K10643_vvi-100267264 | 0 | 100.3 | 53.4 | 67.7 | Solyc06g005190.2.1 | 2CPI | gi|159163841|pdb|2CPI|A Chain A, Solution Structure Of The Rna Recognition Motif Of Cnot4 | 6.00E-18 | 10.9 | 4.6 | 6.5 | Name=IPR003954;Note=RNA recognition%2C region 1 |
| solcap_snp_sl_23061 | I | SL2.40ch06 | 209892 | exon | Y | T | C | + | tcT | tcC | S | S | sSNP | Solyc06g005190.2.1 | # | AGCTGTGAATATGGAGATTGATGGTTGACCAGAGTTTGCTCCAGAGCCCT[A/G]GAAGAAAATCCATCAAATGGGGGATGATTGTTGGCCAGAGTTTGCTCCAC | 0.29 | 0.47 | 0.48 | 0 | 0 | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | GG | AA | GG | AA | AA | AA | AA | AA | AA | AA | AA | AA | GG | GG | GG | GG | GG | - | - | - | gi|297819084|ref|XP_002877425.1| RNA recognition motif-containing protein [Arabidopsis lyrata subsp. lyrata]gi|297323263|gb|EFH53684.1| RNA recognition motif-containing protein [Arabidopsis lyrata subsp. lyrata] | RNA recognition motif-containing protein | 0 | 97.1 | 44.8 | 59.2 | K | KOG2068 | MOT2 transcription factor | 1.00E-122 | 31.5 | 21.7 | 25.0 | K10643_vvi-100267264 | 0 | 100.3 | 53.4 | 67.7 | Solyc06g005190.2.1 | 2CPI | gi|159163841|pdb|2CPI|A Chain A, Solution Structure Of The Rna Recognition Motif Of Cnot4 | 6.00E-18 | 10.9 | 4.6 | 6.5 | Name=IPR003954;Note=RNA recognition%2C region 1 |
| solcap_snp_sl_23057 | I | SL2.40ch06 | 210897 | 3utr | Y | C | T | + | # | # | # | # | uSNP | Solyc06g005190.2.1 | # | TTTCTGATTCTAATGTGTATAGATGACCAAATTCTCCACCCACATCCAAG[A/G]ACGCTGACAGGAGAATCACCTGCCTATTCAGTCAAGCATGAAGCTGTGTC | 0.27 | 0.49 | 0.48 | 0 | 0 | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | AA | GG | AA | GG | GG | GG | GG | GG | GG | GG | GG | GG | AA | AG | AA | AA | AA | - | - | - | gi|297819084|ref|XP_002877425.1| RNA recognition motif-containing protein [Arabidopsis lyrata subsp. lyrata]gi|297323263|gb|EFH53684.1| RNA recognition motif-containing protein [Arabidopsis lyrata subsp. lyrata] | RNA recognition motif-containing protein | 0 | 97.1 | 44.8 | 59.2 | K | KOG2068 | MOT2 transcription factor | 1.00E-122 | 31.5 | 21.7 | 25.0 | K10643_vvi-100267264 | 0 | 100.3 | 53.4 | 67.7 | Solyc06g005190.2.1 | 2CPI | gi|159163841|pdb|2CPI|A Chain A, Solution Structure Of The Rna Recognition Motif Of Cnot4 | 6.00E-18 | 10.9 | 4.6 | 6.5 | Name=IPR003954;Note=RNA recognition%2C region 1 |
| solcap_snp_sl_26806 | I | SL2.40ch06 | 217370 | exon | R | G | A | + | gtG | gtA | V | V | sSNP | Solyc06g005200.2.1 | # | ACCTGAACACCTGCCAATTCTTCAATAGCATCCACAGGAACTTGCCCCGC[T/C]ACTTTTGAAGATATCAAATCTCTAATCTGGAGCCCATGTGCAGGCAGGTT | 0.1 | 0.38 | 0 | 0 | 0 | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | TT | TT | CC | CC | CC | CC | CC | - | - | - | gi|238481602|ref|NP_001154789.1| ribonuclease P subunit Rpp30 [Arabidopsis thaliana]gi|332009879|gb|AED97262.1| ribonuclease P subunit Rpp30 [Arabidopsis thaliana] | ribonuclease P subunit Rpp30 | 1.00E-122 | 101.0 | 29.9 | 39.0 | J | KOG2363 | Protein subunit of nuclear ribonuclease P (RNase P) | 1.00E-124 | 97.4 | 29.9 | 39.0 | K03539_vvi-100241609 | 1.00E-134 | 92.8 | 40.5 | 49.3 | Solyc06g005200.2.1 | - | - | - | - | - | - | Name=IPR002738;Note=RNase P subunit p30 |
| 1 |