| HMMscan | nr | KOG | KEGG | PDB | ITAG2.3 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| SNP ID | Array type ( I: Infinium G: Goldengate) |
Chromosome | Position on the SL2.40 | Location | IUPAC | SNP genotype (Heinz 1706-BG) | SNP genotype (Mutation) | Strand | Codon (Heinz 1706-BG) | Codon (Mutation) | Amino acid residue (Heinz 1706-BG) | Amino acid residue (Mutation) | SNP category | ITAG gene model | Functional site | Flanking sequences on SNP | HZ (The 40 lines) | HZ (cluster 1) | HZ (cluster 2) | HZ (cluster 3) | HZ (cluster 4) | San Marzano | Rutgers | Ponderosa | Aichi First | S. lycopersicum var cerasiforme (WIR25/30) | S. lycopersicum var cerasiforme (TOMJPF00009) | Earliana | Best Of All | Money Maker | Ailsa Craig | LA925 | Fruit | Rio Grande | Marglobe | Heinz 1706-BG | Tomato Chuukanbohon Nou 9 | Furikoma | Tomato Chuukanbohon Nou 11 | Reika | Momotaro 8 | Labell | Matrix | Geronimo | Micro-Tom_AM | Micro-Tom TGRC (LA3911) | Micro-Tom_MM | Micro-Tom | Micro-Tom NBRP (TOMJPF00001) | M82_MM | M82 | Regina | Sweet100 | S. pimpinellifolium (TOMJPF00012) | S. pimpinellifolium (LS1513) | S. pimpinellifolium (PI344102) | S. chilense (LA1958) | S. peruvianum (WIR2020) | S. peruvianum (TOMJPF00010) | S. pennellii (TOMJPF00008) | S. pennellii (LA716) | E-value | Model | HMMscan definition | nr definition | Product (KDRI) | E-value | Length% | Identity% | Positive% | KOG id | KOG No. | KOG definition | E-value | Length% | Identity% | Positive% | KO | E-value | Length% | Identity% | Positive% | Gene name [structural model (tomato)] (Structures with links can be browsed by Jmol.) |
PDB id | PDB definition | E-value | Length% | Identity% | Positive% | ITAG (interpro) |
| 18720_290 | G | SL2.40ch07 | 42006 | exon | Y | C | T | + | atC | atT | I | I | sSNP | Solyc07g005010.2.1 | # | TAAAATTTATGCATGTTCTTGGTCTGGTGTGAAATGTAATGAAAATTCTTCTTTGATTAT[T/C]GGCTTGGATCTTTCTGTGAAAAATCTTGGTGGGATTCTGTCAGAGAATCAATTTAGTGTA | 0.2 | 0 | 0 | 0 | 0 | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | TT | TT | CC | CC | CC | TT | - | - | - | gi|255565085|ref|XP_002523535.1| Receptor protein kinase CLAVATA1 precursor, putative [Ricinus communis]gi|223537242|gb|EEF38874.1| Receptor protein kinase CLAVATA1 precursor, putative [Ricinus communis] | Receptor protein kinase CLAVATA1 precursor, putative | 0 | 99.9 | 64.5 | 79.6 | - | noCOG | 0 | 93.3 | 52.9 | 68.5 | K00924_ath-AT1G75820 | 1.00E-138 | 102.2 | 33.7 | 53.7 | Solyc07g005010.2.1 | 3RIZ | gi|345100882|pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomaingi|345100883|pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With Brassinolide | 4.00E-53 | 80.5 | 17.9 | 27.8 | Dbxref=PROSITE:PS00108;Name=Solyc07g005010.1.1-PS00108-0;Note=PROTEIN_KINASE_ST;database=PROSITE;length=13 | ||||||||||||||
| solcap_snp_sl_68725 | I | SL2.40ch07 | 68730 | exon | R | A | G | - | aTg | aCg | M | T | cSNP | Solyc07g005030.2.1 | # | AAGTGAAGCTCAGATGGATGATGAGATCTCTTCCAGAAAATCTCGCACAA[T/C]GGTGGCAGATTTTCAGGAAAATATATACAAAGTAGATATGACTGGTGCAA | 0.4 | 0.24 | 0 | 0 | 0 | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | CC | CC | CC | CC | CC | TT | TT | TT | TT | TT | -- | CC | CC | CC | CC | CC | CC | - | - | - | gi|255565079|ref|XP_002523532.1| Ribonuclease III, putative [Ricinus communis]gi|223537239|gb|EEF38871.1| Ribonuclease III, putative [Ricinus communis] | Ribonuclease III, putative | 0 | 106.3 | 60.4 | 75.1 | A | KOG0701 | dsRNA-specific nuclease Dicer and related ribonucleases | 0 | 103.5 | 49.5 | 63.9 | K11592_vvi-100243116 | 0 | 105.7 | 62.8 | 76.6 | Solyc07g005030.2.1 | 3C4T | gi|168177333|pdb|3C4T|A Chain A, Structure Of Rnaseiiib And Dsrna Binding Domains Of Mouse Dicer | 4.00E-30 | 17.3 | 5.8 | 8.1 | Name=IPR005034;Note=Dicer double-stranded RNA-binding fold |
| 19068_164 | G | SL2.40ch07 | 124073 | exon | Y | T | C | + | tcT | tcC | S | S | sSNP | Solyc07g005100.2.1 | # | CTCTAATGGACAAAATAATGTTGTTAAAGGAGGGTATTGGTTTAGGGATAGTGGATTATC[T/C]TTAAACAACATTGATTCAACTCTTTTCACACATTTATTTTGTGCGTTCGCAAACCTTAAC | 0.2 | 0 | 0 | 0 | 0 | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | CC | CC | TT | TT | TT | CC | 7.00E-92 | Glyco_hydro_18 | Glycosyl hydrolases family 18 | gi|505267|emb|CAA54374.1| chitinase, class V [Nicotiana tabacum] | chitinase, class V | 1.00E-177 | 100.3 | 79.8 | 89.4 | G | KOG2806 | Chitinase Chitinase | 1.00E-111 | 100.8 | 54.8 | 66.2 | K01183_rcu-RCOM_0701150 | 1.00E-119 | 98.7 | 56.4 | 69.7 | Solyc07g005100.2.1 | 3ALF | gi|326634207|pdb|3ALF|A Chain A, Crystal Structure Of Class V Chitinase From Nicotiana Tobaccum | 1.00E-175 | 93.9 | 76.3 | 85.1 | Name=IPR013781;Note=Glycoside hydrolase%2C subgroup%2C catalytic core | |||||||||||||
| 19593_512 | G | SL2.40ch07 | 165509 | exon | R | G | A | + | Gtt | Att | V | I | cSNP | Solyc07g005140.2.1 | # | GGTGTTAATGGATCTTCCAACTTTCTGGAACATGGTAGATGTAATGACTGGCAAAATTCC[A/G]TTCAGCTATCNAAGTTCCAGTCTAATTCTTTCCCATTGACTGAATCNTTCATTAACAGCC | 0.14 | 0 | 0 | 0 | 0 | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | AA | AA | GG | GG | GG | GG | - | - | - | gi|255565035|ref|XP_002523510.1| two-component system sensor histidine kinase/response regulator, putative [Ricinus communis]gi|223537217|gb|EEF38849.1| two-component system sensor histidine kinase/response regulator, putative [Ricinus communis] | two-component system sensor histidine kinase/response regulator, putative | 0 | 101.7 | 54.9 | 72.3 | K | KOG1601 | GATA-4/5/6 transcription factors | 1.00E-103 | 86.2 | 36.8 | 48.7 | K14491_vvi-100259369 | 0 | 112.8 | 60.8 | 75.0 | Solyc07g005140.2.1 | 1IRZ | gi|28948379|pdb|1IRZ|A Chain A, Solution Structure Of Arr10-B Belonging To The Garp Family Of Plant Myb-Related Dna Binding Motifs Of The Arabidopsis Response Regulators | 7.00E-21 | 9.6 | 6.6 | 8.4 | Name=IPR012287;Note=Homeodomain-related | |||||||||||||
| 16797_706 | G | SL2.40ch07 | 181198 | intron | S | G | C | - | # | # | # | # | iSNP | Solyc07g005180.2.1 | # | TATAATGTAACCCCACCAGTGGGGTCTGGGGAGATTTTTGAGCGTATGCAGACCTTATCT[C/G]TACCGGAGGANGGAGGTAGAGAGACTGTTTTCGATAGACCTTAGGCTCAAGAAAAAAGAA | 0.14 | - | 0 | 0 | 0 | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | GG | GG | CC | CC | CC | -- | - | - | - | - | - | - | - | - | - | V | KOG1823 | DRIM (Down-regulated in metastasis)-like proteins | 8.00E-58 | 97.6 | 64.5 | 74.6 | - | - | - | - | - | Solyc07g005180.2.1 | - | - | - | - | - | - | Name=IPR010471;Note=Protein of unknown function DUF1068 | |||||||||||||
| 7317_142 | G | SL2.40ch07 | 181844 | 3utr | K | T | G | - | # | # | # | # | uSNP | Solyc07g005190.2.1 | # | ATCAGCACTTATTTTCAGSKSMAMATCKKYMAYMATYKGAAAAATCCCAATTAACCCCAT[A/C]ACAGTAGATCCATTTTGCCTTGTAGATCTCACTCCCAATTTGCTCTCAAAGCAAWAARGA | 0.2 | 0 | 0 | 0 | 0 | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | CC | CC | AA | AA | AA | CC | - | - | - | gi|255565027|ref|XP_002523506.1| lysosomal pro-X carboxypeptidase, putative [Ricinus communis]gi|223537213|gb|EEF38845.1| lysosomal pro-X carboxypeptidase, putative [Ricinus communis] | lysosomal pro-X carboxypeptidase, putative | 0 | 100.6 | 70.1 | 80.9 | OR | KOG2183 | Prolylcarboxypeptidase (angiotensinase C) | 0 | 95.6 | 65.7 | 78.3 | K01285_vvi-100260971 | 0 | 100.8 | 73.7 | 84.3 | Solyc07g005190.2.1 | 3N2Z | gi|300193275|pdb|3N2Z|B Chain B, The Structure Of Human Prolylcarboxypeptidase At 2.80 Angstroms Resolution | 1.00E-114 | 89.6 | 40.8 | 58.6 | Name=IPR008758;Note=Peptidase S28 | |||||||||||||
| 2372_120 | G | SL2.40ch07 | 203330 | exon | Y | C | T | - | gtG | gtA | V | V | sSNP | Solyc07g005210.2.1 | # | ACCCTTACTACACTTTGAAATTTTGCAAAAAAATATGACCACAAAAGAGATGGAAGTAGT[A/G]AAGAATTTGGATGTTGAAAAATACATGGGAAGATGGTATGAAATTGCCTCATTTCCATCA | 0.14 | 0 | 0 | 0 | 0 | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | AA | AA | GG | GG | GG | GG | - | - | - | gi|350539918|ref|NP_001234832.1| temperature-induced lipocalin' [Solanum lycopersicum]gi|77744859|gb|ABB02383.1| temperature-induced lipocalin' [Solanum lycopersicum] | temperature-induced lipocalin' | 1.00E-104 | 100.0 | 100.0 | 100.0 | M | KOG4824 | Apolipoprotein D/Lipocalin | 2.00E-82 | 100.5 | 76.2 | 85.9 | K03098_rcu-RCOM_0700620 | 3.00E-89 | 101.1 | 83.2 | 91.9 | Solyc07g005210.2.1 | 3MBT | gi|313754318|pdb|3MBT|A Chain A, Structure Of Monomeric Blc From E. Coli | 1.00E-19 | 90.8 | 29.2 | 45.4 | Name=IPR011038;Note=Calycin-like | |||||||||||||
| 5392_585 | G | SL2.40ch07 | 261871 | exon | Y | T | C | - | gcA | gcG | A | A | sSNP | Solyc07g005330.2.1 | # | TTCATTGCCCCCACCAAAAACCGGTGGCGGAGGCAATAAAGGTCAACCAAAAACACCAGC[A/G]GAGAACAAAAAATTCTGCATGCCAAAGGTTGAGGCAACTGATGCACAACTACAATCCAAC | 0.14 | 0 | 0 | 0 | 0 | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | GG | GG | AA | AA | AA | AA | - | - | - | gi|350534796|ref|NP_001234416.1| beta-glucosidase 08 [Solanum lycopersicum]gi|197260357|gb|ACH56716.1| beta-glucosidase 08 [Solanum lycopersicum] | beta-glucosidase 08 | 0 | 100.0 | 100.0 | 100.0 | - | noCOG | 1.00E-132 | 97.8 | 51.6 | 67.1 | - | - | - | - | - | Solyc07g005330.2.1 | 2CYG | gi|83754908|pdb|2CYG|A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome | 6.00E-49 | 68.0 | 26.8 | 40.3 | Name=IPR013781;Note=Glycoside hydrolase%2C subgroup%2C catalytic core | ||||||||||||||
| 2527_293 | G | SL2.40ch07 | 264373 | exon | Y | C | T | - | gtG | gtA | V | V | sSNP | Solyc07g005330.2.1 | # | AACTTCTATAGGTGTTAATTACGGGACTCTCGGAAACAACCTCCCTCCGCCAGCTCAAGT[A/G]GCTCAGTTCATCAAGGATAAAACGGTCATAGACCGTGTAAAGATTTTCGATATCAACCCT | 0.2 | 0 | 0 | 0 | 0 | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | AA | AA | GG | GG | GG | AA | 6.40E-78 | Glyco_hydro_17 | Glycosyl hydrolases family 17 | gi|350534796|ref|NP_001234416.1| beta-glucosidase 08 [Solanum lycopersicum]gi|197260357|gb|ACH56716.1| beta-glucosidase 08 [Solanum lycopersicum] | beta-glucosidase 08 | 0 | 100.0 | 100.0 | 100.0 | - | noCOG | 1.00E-132 | 97.8 | 51.6 | 67.1 | - | - | - | - | - | Solyc07g005330.2.1 | 2CYG | gi|83754908|pdb|2CYG|A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome | 6.00E-49 | 68.0 | 26.8 | 40.3 | Name=IPR013781;Note=Glycoside hydrolase%2C subgroup%2C catalytic core | ||||||||||||||
| solcap_snp_sl_68671 | I | SL2.40ch07 | 266297 | 3utr | Y | C | T | - | # | # | # | # | uSNP | Solyc07g005340.1.1 | # | TTCAGTCGGTACTTTATATGTATAACATACATTGTTATTGTACATTTGAT[A/G]TTGCTTTTCAGAGTCTGCTTGAAACACTATAGCAGCTTTTGTTCACTCGC | 0.43 | 0.12 | 0 | 0 | 0 | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | AA | AA | AA | AA | AA | GG | GG | GG | GG | AG | AA | AA | AA | AA | AA | AA | AA | - | - | - | - | - | - | - | - | - | S | KOG3113 | Uncharacterized conserved protein | 4.00E-99 | 90.1 | 55.7 | 65.4 | - | - | - | - | - | Solyc07g005340.1.1 | - | - | - | - | - | - | Name=coil;length=29;Note=coiled-coil;Dbxref=COIL:coil;database=COIL |
| 7104_2086 | G | SL2.40ch07 | 279783 | 3utr | R | G | A | - | # | # | # | # | uSNP | Solyc07g005360.2.1 | # | TAGCAGTAGGCTGAGTTCCATTTCACCACAATCACGTAGTGTAGGAACCCCTCACGTTCA[T/C]CTTATTCTTTCACACATTGATCCCGCAATTTTTAACTTGTAAAGTCCAACTTTTACNCCC | 0.14 | 0 | 0 | 0 | 0 | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | TT | TT | CC | CC | CC | CC | - | - | - | gi|224085587|ref|XP_002307628.1| glycosyltransferase, CAZy family GT8 [Populus trichocarpa]gi|222857077|gb|EEE94624.1| glycosyltransferase, CAZy family GT8 [Populus trichocarpa] | glycosyltransferase, CAZy family GT8 | 0 | 101.7 | 59.7 | 75.3 | - | noCOG | 1.00E-170 | 93.8 | 49.7 | 64.7 | K13648_vvi-100251205 | 0 | 98.8 | 60.8 | 76.6 | Solyc07g005360.2.1 | - | - | - | - | - | - | Name=IPR002495;Note=Glycosyl transferase%2C family 8 | ||||||||||||||
| solcap_snp_sl_68666 | I | SL2.40ch07 | 280062 | exon | Y | C | T | - | cGt | cAt | R | H | cSNP | Solyc07g005360.2.1 | # | GAAAGCTGGTACTTTGCCCATTGGTTGGATGACCTTCTACAAACATACAC[A/G]TGCTATAGATCGGAGATGGCATGTCTTGGGATTGGGGTACGACTCTGGTG | 0.1 | 0.38 | 0 | 0 | 0 | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | AA | AA | GG | GG | GG | GG | GG | 4.90E-58 | Glyco_transf_8 | Glycosyl transferase family 8 | gi|224085587|ref|XP_002307628.1| glycosyltransferase, CAZy family GT8 [Populus trichocarpa]gi|222857077|gb|EEE94624.1| glycosyltransferase, CAZy family GT8 [Populus trichocarpa] | glycosyltransferase, CAZy family GT8 | 0 | 101.7 | 59.7 | 75.3 | - | noCOG | 1.00E-170 | 93.8 | 49.7 | 64.7 | K13648_vvi-100251205 | 0 | 98.8 | 60.8 | 76.6 | Solyc07g005360.2.1 | - | - | - | - | - | - | Name=IPR002495;Note=Glycosyl transferase%2C family 8 | |
| solcap_snp_sl_68660 | I | SL2.40ch07 | 282129 | exon | Y | C | T | - | tcG | tcA | S | S | sSNP | Solyc07g005360.2.1 | # | GCTATGAGTGCAACCCTGTCGAAAGCCAGTAGATTGTTCCCTGATTGCTC[A/G]GCAATGGTGAAAAAACTTCGTGCGATGACTTATAATGCTGAGGAACAACT | 0.1 | 0.38 | 0 | 0 | 0 | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | AA | AA | GG | GG | GG | GG | GG | 4.90E-58 | Glyco_transf_8 | Glycosyl transferase family 8 | gi|224085587|ref|XP_002307628.1| glycosyltransferase, CAZy family GT8 [Populus trichocarpa]gi|222857077|gb|EEE94624.1| glycosyltransferase, CAZy family GT8 [Populus trichocarpa] | glycosyltransferase, CAZy family GT8 | 0 | 101.7 | 59.7 | 75.3 | - | noCOG | 1.00E-170 | 93.8 | 49.7 | 64.7 | K13648_vvi-100251205 | 0 | 98.8 | 60.8 | 76.6 | Solyc07g005360.2.1 | - | - | - | - | - | - | Name=IPR002495;Note=Glycosyl transferase%2C family 8 | |
| 9600_275 | G | SL2.40ch07 | 288758 | exon | Y | C | T | - | gGa | gAa | G | E | cSNP | Solyc07g005370.2.1 | # | TTGGGAATCCTCCATATAAAGAGAAGTTTGTGTTAATGGATGATGAAAAAAGAGTGAAGG[A/G]AGTAGAGATTGTTGAAGGTGGATATCTTGATCTTGGATTTACTTTTTATGGATTCAAATT | 0.2 | 0 | 0 | 0 | 0 | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | AA | AA | GG | GG | GG | AA | 1.60E-05 | Polyketide_cyc2 | Polyketide cyclase / dehydrase and lipid transport | gi|61808294|gb|AAX56076.1| pathogenesis-related 10 protein PR10-2 [Papaver somniferum] | pathogenesis-related 10 protein PR10-2 | 1.00E-21 | 108.1 | 33.6 | 59.1 | - | - | - | - | - | - | - | - | - | Solyc07g005370.2.1 | 2VNE | gi|195927322|pdb|2VNE|A Chain A, The X-Ray Structure Of Norcoclaurine Synthase From Thalictrum Flavumgi|195927323|pdb|2VNE|B Chain B, The X-Ray Structure Of Norcoclaurine Synthase From Thalictrum Flavumgi|195927324|pdb|2VQ5|A Chain A, X-Ray Structure Of Norcoclaurine Synthase From Thalictrum Flavum In Complex With Dopamine And Hydroxybenzaldehydegi|195927325|pdb|2VQ5|B Chain B, X-Ray Structure Of Norcoclaurine Synthase From Thalictrum Flavum In Complex With Dopamine And Hydroxybenzaldehyde | 5.00E-18 | 134.9 | 30.2 | 49.7 | Name=IPR002052;Note=DNA methylase%2C N-6 adenine-specific%2C conserved site | ||||||||||||||||
| solcap_snp_sl_68652 | I | SL2.40ch07 | 300383 | exon | Y | T | C | + | ccT | ccC | P | P | sSNP | Solyc07g005390.2.1 | # | AAATTTGCGGATGACTCGGAGACAACTGGAGTGATATCACAATTATCTTC[A/G]GGTGGCCCAACGGTTAACTTTGCCACTTTGGCATTTACCTTCTCAACAAG | 0.43 | 0.12 | 0 | 0 | 0 | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | GG | GG | GG | GG | GG | AA | AA | AA | AA | AG | GG | GG | GG | GG | GG | GG | GG | 1.80E-138 | Aldedh | Aldehyde dehydrogenase family | gi|2494076|sp|P93338.1|GAPN_NICPL RecName: Full=NADP-dependent glyceraldehyde-3-phosphate dehydrogenase; AltName: Full=Glyceraldehyde-3-phosphate dehydrogenase [NADP+]; AltName: Full=Non-phosphorylating glyceraldehyde 3-phosphate dehydrogenase; AltName: Full=Triosephosphate dehydrogenasegi|1842115|gb|AAB47571.1| non-phosphorylating glyceraldehyde dehydrogenase [Nicotiana plumbaginifolia] | RecName: Full=NADP-dependent glyceraldehyde-3-phosphate dehydrogenase; AltName: Full=Glyceraldehyde-3-phosphate dehydrogenase | 0 | 100.0 | 96.6 | 98.8 | C | KOG2450 | Aldehyde dehydrogenase | 0 | 100.0 | 90.5 | 96.6 | K00131_vvi-100260378 | 0 | 100.0 | 93.5 | 97.8 | Solyc07g005390.2.1 | 1EUH | gi|5822059|pdb|1EUH|A Chain A, Apo Form Of A Nadp Dependent Aldehyde Dehydrogenase From Streptococcus Mutansgi|5822060|pdb|1EUH|B Chain B, Apo Form Of A Nadp Dependent Aldehyde Dehydrogenase From Streptococcus Mutansgi|5822061|pdb|1EUH|C Chain C, Apo Form Of A Nadp Dependent Aldehyde Dehydrogenase From Streptococcus Mutansgi|5822062|pdb|1EUH|D Chain D, Apo Form Of A Nadp Dependent Aldehyde Dehydrogenase From Streptococcus Mutansgi|5822470|pdb|2EUH|A Chain A, Holo Form Of A Nadp Dependent Aldehyde Dehydrogenase Complex With Nadp+gi|5822471|pdb|2EUH|B Chain B, Holo Form Of A Nadp Dependent Aldehyde Dehydrogenase Complex With Nadp+gi|5822472|pdb|2EUH|C Chain C, Holo Form Of A Nadp Dependent Aldehyde Dehydrogenase Complex With Nadp+gi|5822473|pdb|2EUH|D Chain D, Holo Form Of A Nadp Dependent Aldehyde Dehydrogenase Complex With Nadp+gi|13096749|pdb|1QI6|A Chain A, Second Apo Form Of An Nadp Dependent Aldehyde Dehydrogenase With Glu250 Situated 3.7 A From Cys284gi|13096750|pdb|1QI6|B Chain B, Second Apo Form Of An Nadp Dependent Aldehyde Dehydrogenase With Glu250 Situated 3.7 A From Cys284gi|13096751|pdb|1QI6|C Chain C, Second Apo Form Of An Nadp Dependent Aldehyde Dehydrogenase With Glu250 Situated 3.7 A From Cys284gi|13096752|pdb|1QI6|D Chain D, Second Apo Form Of An Nadp Dependent Aldehyde Dehydrogenase With Glu250 Situated 3.7 A From Cys284 | 1.00E-137 | 95.8 | 50.0 | 63.5 | Name=IPR016160;Note=Aldehyde dehydrogenase%2C conserved site |
| solcap_snp_sl_68651 | I | SL2.40ch07 | 301028 | exon | Y | C | T | + | acC | acT | T | T | sSNP | Solyc07g005390.2.1 | # | TGGAACGGAAAATGATCCGGTCCACGAGCAGGAGCTGAGTTAATCTGAAC[A/G]GTTCCGGTTTCCATTGCATCACTGATCAGTATTGCTTTGTTGATGTCTTT | 0.1 | 0.38 | 0 | 0 | 0 | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | AA | AA | GG | GG | GG | GG | GG | 1.80E-138 | Aldedh | Aldehyde dehydrogenase family | gi|2494076|sp|P93338.1|GAPN_NICPL RecName: Full=NADP-dependent glyceraldehyde-3-phosphate dehydrogenase; AltName: Full=Glyceraldehyde-3-phosphate dehydrogenase [NADP+]; AltName: Full=Non-phosphorylating glyceraldehyde 3-phosphate dehydrogenase; AltName: Full=Triosephosphate dehydrogenasegi|1842115|gb|AAB47571.1| non-phosphorylating glyceraldehyde dehydrogenase [Nicotiana plumbaginifolia] | RecName: Full=NADP-dependent glyceraldehyde-3-phosphate dehydrogenase; AltName: Full=Glyceraldehyde-3-phosphate dehydrogenase | 0 | 100.0 | 96.6 | 98.8 | C | KOG2450 | Aldehyde dehydrogenase | 0 | 100.0 | 90.5 | 96.6 | K00131_vvi-100260378 | 0 | 100.0 | 93.5 | 97.8 | Solyc07g005390.2.1 | 1EUH | gi|5822059|pdb|1EUH|A Chain A, Apo Form Of A Nadp Dependent Aldehyde Dehydrogenase From Streptococcus Mutansgi|5822060|pdb|1EUH|B Chain B, Apo Form Of A Nadp Dependent Aldehyde Dehydrogenase From Streptococcus Mutansgi|5822061|pdb|1EUH|C Chain C, Apo Form Of A Nadp Dependent Aldehyde Dehydrogenase From Streptococcus Mutansgi|5822062|pdb|1EUH|D Chain D, Apo Form Of A Nadp Dependent Aldehyde Dehydrogenase From Streptococcus Mutansgi|5822470|pdb|2EUH|A Chain A, Holo Form Of A Nadp Dependent Aldehyde Dehydrogenase Complex With Nadp+gi|5822471|pdb|2EUH|B Chain B, Holo Form Of A Nadp Dependent Aldehyde Dehydrogenase Complex With Nadp+gi|5822472|pdb|2EUH|C Chain C, Holo Form Of A Nadp Dependent Aldehyde Dehydrogenase Complex With Nadp+gi|5822473|pdb|2EUH|D Chain D, Holo Form Of A Nadp Dependent Aldehyde Dehydrogenase Complex With Nadp+gi|13096749|pdb|1QI6|A Chain A, Second Apo Form Of An Nadp Dependent Aldehyde Dehydrogenase With Glu250 Situated 3.7 A From Cys284gi|13096750|pdb|1QI6|B Chain B, Second Apo Form Of An Nadp Dependent Aldehyde Dehydrogenase With Glu250 Situated 3.7 A From Cys284gi|13096751|pdb|1QI6|C Chain C, Second Apo Form Of An Nadp Dependent Aldehyde Dehydrogenase With Glu250 Situated 3.7 A From Cys284gi|13096752|pdb|1QI6|D Chain D, Second Apo Form Of An Nadp Dependent Aldehyde Dehydrogenase With Glu250 Situated 3.7 A From Cys284 | 1.00E-137 | 95.8 | 50.0 | 63.5 | Name=IPR016160;Note=Aldehyde dehydrogenase%2C conserved site |
| 11459_449 | G | SL2.40ch07 | 310142 | exon | Y | C | T | + | ttC | ttT | F | F | sSNP | Solyc07g005400.2.1 | # | GCCGCATAACCCTAGCTCCGGCGAAGATCAACCTCCTTCTAATCCATTTCACTCACAGTT[T/C]CATTACGACGACCAAGCTTCTTCTCTACTAGCTTCAAAGCTCCGTCAACATCAGATCACT | 0.14 | 0 | 0 | 0 | 0 | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | TT | TT | CC | CC | CC | CC | - | - | - | gi|93280154|gb|ABF06705.1| Joka8 [Nicotiana plumbaginifolia] | Joka8 | 1.00E-122 | 81.8 | 60.7 | 64.1 | - | noCOG | 4.00E-69 | 79.5 | 35.7 | 42.3 | - | - | - | - | - | Solyc07g005400.2.1 | - | - | - | - | - | - | Name=IPR011598;Note=Helix-loop-helix DNA-binding | ||||||||||||||
| 6976_221 | G | SL2.40ch07 | 340399 | 5utr | Y | C | T | - | # | # | # | # | rSNP | Solyc07g005440.1.1 | # | GGGTGAATCACTCACCCGTTTTCGTCTTCCCCGGTTCACCAAATCCCTTTTTAATAACAG[A/G]TTCAAACACCCTTTTCAATCTTTAGTCTCTTTTTTTTCAATCAATTTNGAACCAAACAAA | 0.2 | 0 | 0 | 0 | 0 | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | AA | AA | GG | GG | GG | AA | - | - | - | gi|347953950|gb|AEP33595.1| CBL-interacting protein kinase 6 [Solanum lycopersicum] | CBL-interacting protein kinase 6 | 0 | 101.9 | 80.4 | 90.6 | T | KOG0583 | Serine/threonine protein kinase | 1.00E-177 | 104.0 | 73.6 | 86.1 | K00924_osa-4342410 | 1.00E-134 | 106.1 | 54.0 | 74.3 | Solyc07g005440.1.1 | 2FH9 | gi|93279511|pdb|2FH9|A Chain A, Structure And Dimerization Of The Kinase Domain From Yeast Snf1 | 9.00E-64 | 64.6 | 29.0 | 41.7 | Name=PF03822;length=62;Note=NAF;Dbxref=PFAM:PF03822;database=PFAM | |||||||||||||
| SGN-U599029_snp526 | I | SL2.40ch07 | 375158 | exon | Y | C | T | - | gaG | gaA | E | E | sSNP | Solyc07g005470.2.1 | # | TTTGTGTTATATGTGGGATTTAGGTATTACCAACAAAAAATGATGAAAGA[A/G]GGATGGATAGATGAAGAAGAAATTACAAAATCAGAGGATTATTGGCAAGA | 0.43 | 0.12 | 0 | 0 | 0 | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | AA | AA | AA | AA | AA | GG | GG | GG | GG | AG | AA | AA | AA | AA | AA | AA | AA | 0.057 | DUF2154 | Predicted membrane protein (DUF2154) | - | - | - | - | - | - | - | noCOG | 3.00E-80 | 85.9 | 17.6 | 23.0 | - | - | - | - | - | Solyc07g005470.2.1 | - | - | - | - | - | - | Name=IPR003388;Note=Reticulon | |
| 3793_469 | G | SL2.40ch07 | 402659 | exon | R | A | G | + | ccA | ccG | P | P | sSNP | Solyc07g005510.2.1 | # | ACAGAAAGGCTGCTTAATTTACTCGAGAAAGAAAAATGTTATACAAGCTGTTGCCGTTCC[A/G]ATAGCACCTGCACCCTTAGACTCWGCAGAGGAAAGGAATCGATTAAGTGAAAAATATGGT | 0.2 | 0 | 0 | 0 | 0 | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | GG | GG | AA | AA | AA | GG | - | - | - | gi|58013371|gb|AAW63039.1| plastidial delta-12 oleate desaturase [Olea europaea] | plastidial delta-12 oleate desaturase | 0 | 100.5 | 77.6 | 86.6 | - | noCOG | 0 | 101.6 | 71.2 | 79.8 | K10255_pop-POPTR_802185 | 0 | 87.8 | 70.5 | 78.5 | Solyc07g005510.2.1 | - | - | - | - | - | - | Name=IPR005804;Note=Fatty acid desaturase%2C type 1 | ||||||||||||||
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