| HMMscan | nr | KOG | KEGG | PDB | ITAG2.3 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| SNP ID | Array type ( I: Infinium G: Goldengate) |
Chromosome | Position on the SL2.40 | Location | IUPAC | SNP genotype (Heinz 1706-BG) | SNP genotype (Mutation) | Strand | Codon (Heinz 1706-BG) | Codon (Mutation) | Amino acid residue (Heinz 1706-BG) | Amino acid residue (Mutation) | SNP category | ITAG gene model | Functional site | Flanking sequences on SNP | HZ (The 40 lines) | HZ (cluster 1) | HZ (cluster 2) | HZ (cluster 3) | HZ (cluster 4) | San Marzano | Rutgers | Ponderosa | Aichi First | S. lycopersicum var cerasiforme (WIR25/30) | S. lycopersicum var cerasiforme (TOMJPF00009) | Earliana | Best Of All | Money Maker | Ailsa Craig | LA925 | Fruit | Rio Grande | Marglobe | Heinz 1706-BG | Tomato Chuukanbohon Nou 9 | Furikoma | Tomato Chuukanbohon Nou 11 | Reika | Momotaro 8 | Labell | Matrix | Geronimo | Micro-Tom_AM | Micro-Tom TGRC (LA3911) | Micro-Tom_MM | Micro-Tom | Micro-Tom NBRP (TOMJPF00001) | M82_MM | M82 | Regina | Sweet100 | S. pimpinellifolium (TOMJPF00012) | S. pimpinellifolium (LS1513) | S. pimpinellifolium (PI344102) | S. chilense (LA1958) | S. peruvianum (WIR2020) | S. peruvianum (TOMJPF00010) | S. pennellii (TOMJPF00008) | S. pennellii (LA716) | E-value | Model | HMMscan definition | nr definition | Product (KDRI) | E-value | Length% | Identity% | Positive% | KOG id | KOG No. | KOG definition | E-value | Length% | Identity% | Positive% | KO | E-value | Length% | Identity% | Positive% | Gene name [structural model (tomato)] (Structures with links can be browsed by Jmol.) |
PDB id | PDB definition | E-value | Length% | Identity% | Positive% | ITAG (interpro) |
| CL015795-0204 | I | SL2.40ch08 | 28158 | exon | R | A | G | + | gAa | gGa | E | G | cSNP | Solyc08g005030.1.1 | # | GGNCGAAATTGGAAAAGGGATGCCCGAAAGGCCCATGTTGCCAGGCAGAATGAAGTTAGTACTAATAATACGGTTTCTCCAGATTTAGCTTCAATTGGTG[A/G]AGGTCAAGCAACATTACTTACCCACGTTGAACAGTCAGATGTCGCGATGAGTGATGTNATTTCTTCACCTGTGACTGCATNGGAAAATATCGGAACACCC | 0.22 | 0.47 | 0 | 0 | 0 | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | GG | GG | GG | GG | GG | - | - | - | No_hits | - | - | - | - | - | - | - | - | - | - | - | - | - | - | Solyc08g005030.1.1 | - | - | - | - | - | - | # | |||
| CL015795-0319 | I | SL2.40ch08 | 28273 | exon | M | C | A | + | agC | agA | S | R | cSNP | Solyc08g005030.1.1 | # | TACTTACCCACGTTGAACAGTCAGATGTCGCGATGAGTGATGTNATTTCTTCACCTGTGACTGCATNGGAAAATATCGGAACACCCAAATCTATTGCCAG[A/C]AGGAGAAATTGGAAAGCAGAAGCTAGAAATAAGAAGAGCTGAAATTGTTGACAATATGTTAAGGTCAAGTATGTCACAGAACATTATCAATTGTTAGCAG | 0.07 | 0.22 | 0 | 0 | 0 | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | AC | CC | AA | CC | CC | CC | CC | CC | CC | - | - | - | No_hits | - | - | - | - | - | - | - | - | - | - | - | - | - | - | Solyc08g005030.1.1 | - | - | - | - | - | - | # | |||
| solcap_snp_sl_56370 | I | SL2.40ch08 | 29999 | exon | Y | T | C | - | Acg | Gcg | T | A | cSNP | Solyc08g005040.1.1 | # | CATGAACTCTATCGGACCACTATTATGAACCCTCCGAGAACCGTTTCGCG[T/C]ATTATTTTCTTTTCCCATTATGGTTCGACCCCTCGTTTTTTCATATTTCC | 0.28 | 0 | 0 | 0 | 0 | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TC | CC | CC | CC | CC | CC | CC | -- | -- | - | - | - | - | - | - | - | - | - | - | noCOG | 9.00E-11 | 118.8 | 42.9 | 63.4 | - | - | - | - | - | Solyc08g005040.1.1 | - | - | - | - | - | - | # | |
| solcap_snp_sl_7232 | I | SL2.40ch08 | 35179 | exon | Y | C | T | - | gaG | gaA | E | E | sSNP | Solyc08g005050.2.1 | # | CATGATTCACGAGCACCGTCAATTAAAGCCTGAAGCCTTTGCTGTAGTGA[T/C]TCTTGATTGAAAAACGGCATCGTTTCTCCGACTCCGTTCACCGGAGTCGG | 0.47 | 0 | 0 | 0 | 0.5 | CC | CC | TT | TT | CC | CC | CC | TT | TT | CC | TT | TT | TT | TT | CC | CC | TT | TT | TT | TT | TT | TT | TT | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | - | - | - | gi|45421752|emb|CAF74711.1| MYC transcription factor [Solanum tuberosum] | MYC transcription factor | 1.00E-111 | 139.2 | 42.7 | 44.2 | - | noCOG | 6.00E-69 | 110.1 | 44.4 | 59.7 | K13422_vvi-100250607 | 1.00E-84 | 142.9 | 39.2 | 45.0 | Solyc08g005050.2.1 | - | - | - | - | - | - | Name=IPR011598;Note=Helix-loop-helix DNA-binding | |
| CL015562-0106 | I | SL2.40ch08 | 99029 | intron | M | C | A | + | # | # | # | # | iSNP | Solyc08g005150.2.1 | # | AAAATGCAATATGCATCAGTTTGNCNNNNTTTCTTATGGTTGNNCTAGTTAAGAA[A/C]AAATAGTTGAATGATCGTGTACGAGCGCAAATTTGTGTCATTTTCTTTTTCATTAATATTAATTCAAATNTTCGTAGCAATATGGTTAATGTTAGTATTT | 0.1 | 0.41 | 0 | 0 | 0 | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | -- | CC | CC | CC | AA | AA | - | - | - | - | - | - | - | - | - | O | KOG1814 | Predicted E3 ubiquitin ligase | 0 | 101.5 | 54.7 | 68.9 | K11971_vvi-100262589 | 0 | 128.0 | 59.4 | 70.9 | Solyc08g005150.2.1 | - | - | - | - | - | - | Name=IPR006575;Note=RWD |
| solcap_snp_sl_24383 | I | SL2.40ch08 | 140415 | 3utr | R | G | A | - | # | # | # | # | uSNP | Solyc08g005220.2.1 | # | TGTTTGCTCTATCGAGTTCATGATAATTGATCATCTTTTTAGTGCTTCTC[A/G]TTTTGAATAGCCCATGCCGGAGAGCACATAGTTTTTTTTCTGTATTCTCG | 0.02 | 0.12 | 0 | 0 | 0 | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | AG | GG | GG | GG | - | - | - | gi|255555879|ref|XP_002518975.1| Plastid lipid-associated protein 3, chloroplast precursor, putative [Ricinus communis]gi|223541962|gb|EEF43508.1| Plastid lipid-associated protein 3, chloroplast precursor, putative [Ricinus communis] | Plastid lipid-associated protein 3, chloroplast precursor, putative | 4.00E-91 | 87.8 | 44.3 | 53.8 | - | noCOG | 2.00E-88 | 90.0 | 44.3 | 54.8 | - | - | - | - | - | Solyc08g005220.2.1 | - | - | - | - | - | - | Name=IPR006843;Note=PAP fibrillin | |
| solcap_snp_sl_56389 | I | SL2.40ch08 | 144156 | 5utr | Y | T | C | + | # | # | # | # | rSNP | Solyc08g005230.2.1 | # | TATCCCTCGCCGGGAAACCAAAAAAATCTAGGGTTTGTTGTTCACCGGAC[T/C]AACGCCGACCATGGCTATGCACGCTGGAGTAGGCTTAACAAAGATCGTGT | 0.07 | 0.22 | 0 | 0 | 0 | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TC | TT | TT | CC | TT | TT | TT | TT | TT | - | - | - | - | - | - | - | - | - | - | noCOG | 2.00E-86 | 102.7 | 56.4 | 73.3 | - | - | - | - | - | Solyc08g005230.2.1 | - | - | - | - | - | - | Name=IPR012458;Note=Protein of unknown function DUF1664 | |
| solcap_snp_sl_24384 | I | SL2.40ch08 | 216751 | 3utr | S | C | G | - | # | # | # | # | uSNP | Solyc08g005290.2.1 | # | CAAAGTTTGTTAGGTTAAACTCCTAATCATCAATCCACATTTATGCAGCT[C/G]GTGCTTCATTGACGACCCTACTGGGACTCGGTTTGTGAAGAATGTTGGGC | 0.3 | 0.22 | 0 | 0 | 0 | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CG | CC | GG | GG | GG | GG | GG | GG | GG | - | - | - | gi|255555917|ref|XP_002518994.1| DNA-binding protein EMBP-1, putative [Ricinus communis]gi|223541981|gb|EEF43527.1| DNA-binding protein EMBP-1, putative [Ricinus communis] | DNA-binding protein EMBP-1, putative | 1.00E-167 | 102.0 | 76.3 | 85.4 | - | noCOG | 1.00E-129 | 92.7 | 61.5 | 71.8 | K09060_rcu-RCOM_1316780 | 1.00E-168 | 102.0 | 76.3 | 85.4 | Solyc08g005290.2.1 | - | - | - | - | - | - | Name=IPR011616;Note=bZIP transcription factor%2C bZIP-1 | |
| solcap_snp_sl_7272 | I | SL2.40ch08 | 236771 | exon | M | C | A | + | gCa | gAa | A | E | cSNP | Solyc08g005310.2.1 | # | ACCGGAGCAGTTGATTATTAATGGATTTCCTTTGAAGCCTGATGAGATGG[A/C]AGAACTCTTTGGGTGCCCTTTACCGCCTCAGAAGTTAAAGCCTGGAAGTT | 0.39 | 0 | 0 | 0 | 0.21 | CC | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | CC | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AC | CC | CC | CC | CC | CC | CC | CC | CC | - | - | - | gi|255555919|ref|XP_002518995.1| GTP-binding protein alpha subunit, gna, putative [Ricinus communis]gi|223541982|gb|EEF43528.1| GTP-binding protein alpha subunit, gna, putative [Ricinus communis] | GTP-binding protein alpha subunit, gna, putative | 0 | 94.5 | 53.3 | 59.7 | DT | KOG0082 | G-protein alpha subunit (small G protein superfamily) | 0 | 66.6 | 46.0 | 52.3 | - | - | - | - | - | Solyc08g005310.2.1 | 2XTZ | gi|323462777|pdb|2XTZ|A Chain A, Crystal Structure Of The G Alpha Protein Atgpa1 From Arabidopsis Thalianagi|323462778|pdb|2XTZ|B Chain B, Crystal Structure Of The G Alpha Protein Atgpa1 From Arabidopsis Thalianagi|323462779|pdb|2XTZ|C Chain C, Crystal Structure Of The G Alpha Protein Atgpa1 From Arabidopsis Thaliana | 4.00E-51 | 27.8 | 10.1 | 16.0 | Name=IPR011025;Note=G protein alpha subunit%2C helical insertion |
| solcap_snp_sl_56404 | I | SL2.40ch08 | 269815 | 3utr | Y | C | T | + | # | # | # | # | uSNP | Solyc08g005350.2.1 | # | AGCAAAATCACAACAATGGAAGACTAAATAAGTGATTTTCCCAAGTTCAT[T/C]GGATCTCGAGACATTCGTGGTTGACCAGTGCTATCACAGACCAATGGTAA | 0.12 | 0.38 | 0 | 0 | 0 | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | TC | CC | TT | TT | CC | CC | CC | CC | CC | - | - | - | - | - | - | - | - | - | - | noCOG | 3.00E-24 | 120.8 | 24.4 | 44.7 | - | - | - | - | - | Solyc08g005350.2.1 | - | - | - | - | - | - | # | |
| solcap_snp_sl_56416 | I | SL2.40ch08 | 362038 | exon | Y | T | C | - | acA | acG | T | T | sSNP | Solyc08g005490.2.1 | # | CATAACTTCTTCTGGCAAATCAATATCTTCTCCTTCTCTACGCCGTATTC[T/C]GTTTCTTCCTTACGACAGCTCCATCTCATCCCCTTAGCCATAGTAGCAAT | 0.3 | 0.22 | 0 | 0 | 0 | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TC | TT | CC | CC | CC | CC | CC | CC | CC | 1.00E-213 | DUF248 | Putative methyltransferase | - | - | - | - | - | - | - | noCOG | 0 | 101.0 | 76.9 | 86.4 | - | - | - | - | - | Solyc08g005490.2.1 | - | - | - | - | - | - | # | |
| solcap_snp_sl_19759 | I | SL2.40ch08 | 393921 | 5utr | Y | C | T | + | # | # | # | # | rSNP | Solyc08g005530.2.1 | # | CAGACGACAATACTGTTGGACCAACTTGCATTTTCGGGATCACCTTTGTC[T/C]GGCAAGCAACCTTTTCTGAAACTTGCTTAGGTGATTTTCTTCTTCCCTGT | 0.44 | 0 | 0 | 0 | 0.36 | CC | TT | CC | CC | CC | CC | TT | CC | CC | TT | CC | CC | CC | CC | CC | TT | CC | CC | CC | CC | CC | CC | CC | TT | TT | TT | TT | TT | TT | TT | TT | TC | CC | CC | CC | CC | CC | CC | -- | -- | - | - | - | No_hits | - | - | - | - | - | - | - | - | - | - | - | - | - | - | Solyc08g005530.2.1 | - | - | - | - | - | - | # | |||
| solcap_snp_sl_56425 | I | SL2.40ch08 | 417491 | exon | R | G | A | + | tcG | tcA | S | S | sSNP | Solyc08g005560.2.1 | # | GCTGCTGCTTCTGCAAGTACAAAGGCACCTAAATTGGGAATGTGCATTTC[A/G]CCTTTGGCTTCCTCTGCTGCTCTAGCAGAAACCCGATGGTCCTCGCAAGC | 0.28 | 0 | 0 | 0 | 0 | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | AG | AA | AA | AA | AA | AA | AA | -- | -- | - | - | - | gi|42572951|ref|NP_974572.1| uncharacterized protein [Arabidopsis thaliana]gi|332658751|gb|AEE84151.1| uncharacterized protein [Arabidopsis thaliana] | uncharacterized protein | 1.00E-133 | 100.4 | 55.7 | 67.6 | - | noCOG | 1.00E-133 | 102.4 | 55.9 | 67.6 | - | - | - | - | - | Solyc08g005560.2.1 | - | - | - | - | - | - | Name=IPR019793;Note=Peroxidases heam-ligand binding site | |
| CL016723-0167 | I | SL2.40ch08 | 495415 | exon | W | T | A | - | gAt | gTt | D | V | cSNP | Solyc08g005630.2.1 | # | AAAATAANACTATAGAATATGGCTTATCAAAATGGTGGAAATATGGAGAAAGTGAAGGATG[A/T]TGNAAAAAAGGGNCATTTTGGCTCACTTTCTTTTAGTCAAATGGATTCACTNANTGCTATTTGTGACACTTTCTTGCCATCCATTGATACTAATTCTCTT | 0.43 | 0.22 | 0 | 0 | 0 | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | TT | TT | TT | TT | TT | AA | AA | AA | TA | AA | TT | TT | TT | TT | TT | TT | TT | - | - | - | gi|255557817|ref|XP_002519938.1| electron carrier, putative [Ricinus communis]gi|223540984|gb|EEF42542.1| electron carrier, putative [Ricinus communis] | electron carrier, putative | 0 | 91.7 | 56.5 | 70.5 | - | noCOG | 0 | 87.6 | 46.4 | 57.2 | - | - | - | - | - | Solyc08g005630.2.1 | - | - | - | - | - | - | Name=IPR012400;Note=Long-chain fatty alcohol dehydrogenase | |
| 10489_192 | G | SL2.40ch08 | 558952 | 5utr | Y | C | T | - | # | # | # | # | rSNP | Solyc08g005690.1.1 | # | TTGCATCAACTGAATTGGAGACCGCTGTGAAATGAAGATTTTGGATTGATTTAATCTAAC[T/C]CAGATTCGGTTTAGATCGATCTAGTATTGGCGATTTGCTTTGCCTCAGCAATNTTCATGA | 0.23 | 0 | 0 | 0 | 0 | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | TT | TT | CC | CC | CT | TT | - | - | - | No_hits | - | - | - | - | - | - | - | - | - | - | - | - | - | - | Solyc08g005690.1.1 | - | - | - | - | - | - | # | ||||||||||||||||
| 18065_277 | G | SL2.40ch08 | 586285 | exon | R | A | G | + | aaA | aaG | K | K | sSNP | Solyc08g005720.2.1 | # | GTTGCTAAGGATGGTTCTTCAATCTAAAGGAAAAGGAAGCAAAGTACCACAAGCATTGAA[A/G]GATTTATTTTGGAGGACAACCAAAGCGGTTTATTTCTTTTATTCAGATCATGATGAGTTT | 0.23 | 0 | 0 | 0 | 0 | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | GG | GG | AA | AA | AG | GG | 0.0064 | PIG-S | Phosphatidylinositol-glycan biosynthesis class S protein | gi|322518636|sp|B8XA41.1|SBS_SOLHA RecName: Full=Santalene and bergamotene synthase, chloroplastic; AltName: Full=(+)-alpha-santalene synthase ((2Z,6Z)-farnesyl diphosphate cyclizing); AltName: Full=(+)-endo-beta-bergamotene synthase ((2Z,6Z)-farnesyl diphosphate cyclizing); AltName: Full=(-)-endo-alpha-bergamotene synthase ((2Z,6Z)-farnesyl diphosphate cyclizing); Flags: Precursorgi|212727257|gb|ACJ38409.1| santalene and bergamotene synthase [Solanum habrochaites] | RecName: Full=Santalene and bergamotene synthase, chloroplastic; AltName: Full=(+)-alpha-santalene synthase ((2Z,6Z)-farnesyl diphosphate cyclizing); AltName: Full=(+)-endo-beta-bergamotene synthase ((2Z,6Z)-farnesyl diphosphate cyclizing); AltName: Full=(-)-endo-alpha-bergamotene synthase ((2Z,6Z)-farnesyl diphosphate cyclizing); Flags: Precursorgi|212727257|gb|ACJ38409.1| santalene and bergamotene synthase | 0 | 102.8 | 70.8 | 83.6 | - | noCOG | 1.00E-128 | 103.8 | 38.9 | 57.3 | K04121_vvi-100267397 | 1.00E-151 | 105.8 | 40.2 | 61.9 | Solyc08g005720.2.1 | 3P5P | gi|315583584|pdb|3P5P|A Chain A, Crystal Structure Of Taxadiene Synthase From Pacific Yew (Taxus Brevifolia) In Complex With Mg2+ And 13-Aza-13,14-Dihydrocopalyl Diphosphategi|315583585|pdb|3P5R|A Chain A, Crystal Structure Of Taxadiene Synthase From Pacific Yew (Taxus Brevifolia) In Complex With Mg2+ And 2-Fluorogeranylgeranyl Diphosphategi|315583586|pdb|3P5R|B Chain B, Crystal Structure Of Taxadiene Synthase From Pacific Yew (Taxus Brevifolia) In Complex With Mg2+ And 2-Fluorogeranylgeranyl Diphosphate | 2.00E-77 | 101.1 | 29.0 | 49.6 | Name=IPR001906;Note=Terpene synthase-like | ||||||||||||||
| CL017308-0478 | I | SL2.40ch08 | 695574 | exon | R | G | A | + | tcG | tcA | S | S | sSNP | Solyc08g005910.2.1 | # | TCAATTTGTGGCAATAAGGATTGGATTTTGGAGCTTTGCTTATTAGGNAAGNGGAGAAGAGGAAAATGGAGGAGGATCAGGTTGGTTCGACTCGACGATC[A/G]AGAAGAATGCGTATAACTGCAGGTGATACGGATGATCGCGGTTGGACTCCACTTCA | 0.14 | 0.47 | 0 | 0 | 0 | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | AG | AG | AA | AA | - | - | - | gi|255582209|ref|XP_002531897.1| ankyrin repeat-containing protein, putative [Ricinus communis]gi|223528464|gb|EEF30496.1| ankyrin repeat-containing protein, putative [Ricinus communis] | ankyrin repeat-containing protein, putative | 5.00E-62 | 104.7 | 70.4 | 78.1 | R | KOG0504 | FOG: Ankyrin repeat | 3.00E-57 | 126.0 | 62.1 | 74.0 | K06694_gga-422351 | 1.00E-13 | 126.0 | 34.9 | 45.6 | Solyc08g005910.2.1 | 3Q9U | gi|329666190|pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity Complementary Protein-Protein Interfacegi|329666191|pdb|3Q9U|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity Complementary Protein-Protein Interfacegi|330689565|pdb|3Q9N|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity Complementary Protein-Protein Interfacegi|330689566|pdb|3Q9N|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity Complementary Protein-Protein Interface | 2.00E-17 | 93.5 | 26.0 | 36.7 | Name=IPR002110;Note=Ankyrin |
| 4245_155 | G | SL2.40ch08 | 749732 | exon | M | C | A | + | atC | atA | I | I | sSNP | Solyc08g005980.2.1 | # | CAGAGTAAAATTGGCCAAAATTGTGTAGTTCAAAGCCGCCATTGTTATGGAGAAACTCAT[A/C]TATTCAACAACCCAATGTCCCTCTAAACTCCATCACCAAAATCGTTCTCATCCTCTTCTT | 0.17 | - | 0 | 0 | 0 | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | AA | AA | CC | CC | AC | -- | - | - | - | gi|167857805|gb|ACA03877.1| chloroplast zebra-necrosis protein [Nicotiana benthamiana] | chloroplast zebra-necrosis protein | 1.00E-160 | 99.2 | 82.0 | 87.5 | - | noCOG | 1.00E-119 | 97.1 | 63.7 | 76.8 | - | - | - | - | - | Solyc08g005980.2.1 | - | - | - | - | - | - | Name=IPR011541;Note=Nickel/cobalt transporter%2C high-affinity | ||||||||||||||
| 2404_427 | G | SL2.40ch08 | 765198 | exon | Y | T | C | - | caA | caG | Q | Q | sSNP | Solyc08g006000.2.1 | # | ATCTTCTGTGGCCGGTTTTCTGTCTTTGTTTTATCCGTATCAAGGAAAGTCAGTTCCACA[A/G]GCTGCTTTGCTGAGAAACACTAGTTTCCTCGTGTTCTTAAATATTGCATTGGGCACAACT | 0.17 | 0 | 0 | 0 | 0 | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | GG | GG | AA | AA | AG | AA | 2.30E-14 | DUF1218 | Protein of unknown function (DUF1218) | - | - | - | - | - | - | - | noCOG | 7.00E-76 | 100.0 | 69.2 | 81.5 | - | - | - | - | - | Solyc08g006000.2.1 | - | - | - | - | - | - | Name=IPR009606;Note=Protein of unknown function DUF1218 | ||||||||||||||
| SL10396_1348 | I | SL2.40ch08 | 766560 | intron | R | G | A | - | # | # | # | # | iSNP | Solyc08g006000.2.1 | # | TCTGCTATGTTTTATCCTTTGATTGTCTAAATTCTGTACGATATGCTTGC[T/C]TAGTTCTTTTGTGTGTGTGTGTGTGTGT | 0.14 | 0 | 0 | 0 | 0.11 | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | TT | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | TT | TT | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | - | - | - | - | - | - | - | - | - | - | noCOG | 7.00E-76 | 100.0 | 69.2 | 81.5 | - | - | - | - | - | Solyc08g006000.2.1 | - | - | - | - | - | - | Name=IPR009606;Note=Protein of unknown function DUF1218 | |
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