| HMMscan | nr | KOG | KEGG | PDB | ITAG2.3 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| SNP ID | Array type ( I: Infinium G: Goldengate) |
Chromosome | Position on the SL2.40 | Location | IUPAC | SNP genotype (Heinz 1706-BG) | SNP genotype (Mutation) | Strand | Codon (Heinz 1706-BG) | Codon (Mutation) | Amino acid residue (Heinz 1706-BG) | Amino acid residue (Mutation) | SNP category | ITAG gene model | Functional site | Flanking sequences on SNP | HZ (The 40 lines) | HZ (cluster 1) | HZ (cluster 2) | HZ (cluster 3) | HZ (cluster 4) | San Marzano | Rutgers | Ponderosa | Aichi First | S. lycopersicum var cerasiforme (WIR25/30) | S. lycopersicum var cerasiforme (TOMJPF00009) | Earliana | Best Of All | Money Maker | Ailsa Craig | LA925 | Fruit | Rio Grande | Marglobe | Heinz 1706-BG | Tomato Chuukanbohon Nou 9 | Furikoma | Tomato Chuukanbohon Nou 11 | Reika | Momotaro 8 | Labell | Matrix | Geronimo | Micro-Tom_AM | Micro-Tom TGRC (LA3911) | Micro-Tom_MM | Micro-Tom | Micro-Tom NBRP (TOMJPF00001) | M82_MM | M82 | Regina | Sweet100 | S. pimpinellifolium (TOMJPF00012) | S. pimpinellifolium (LS1513) | S. pimpinellifolium (PI344102) | S. chilense (LA1958) | S. peruvianum (WIR2020) | S. peruvianum (TOMJPF00010) | S. pennellii (TOMJPF00008) | S. pennellii (LA716) | E-value | Model | HMMscan definition | nr definition | Product (KDRI) | E-value | Length% | Identity% | Positive% | KOG id | KOG No. | KOG definition | E-value | Length% | Identity% | Positive% | KO | E-value | Length% | Identity% | Positive% | Gene name [structural model (tomato)] (Structures with links can be browsed by Jmol.) |
PDB id | PDB definition | E-value | Length% | Identity% | Positive% | ITAG (interpro) |
| solcap_snp_sl_17547 | I | SL2.40ch09 | 48822 | exon | M | C | A | - | ggG | ggT | G | G | sSNP | Solyc09g005080.1.1 | # | GAACACTATGAAGATGAGACCCCAGATGACACCGAAGATGACGATGAGGG[T/G]GGAAAAGAAGCATCTCTTGGGCGTTATTGTGTCTTCTGTAGTAAACTTGA | 0.48 | 0 | 0 | 0.18 | 0.29 | TT | TT | TT | TT | TT | TT | TT | TT | GG | TT | TT | TT | TT | GG | GG | TT | TT | TT | GG | TG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | TG | GG | GG | GG | GG | GG | GG | GG | GG | - | - | - | gi|237899607|gb|ACR33108.1| verticillium wilt disease resistance protein [Solanum lycopersicum]gi|237899611|gb|ACR33110.1| verticillium wilt disease resistance protein [Solanum lycopersicum]gi|237899613|gb|ACR33111.1| verticillium wilt disease resistance protein [Solanum lycopersicum] | verticillium wilt disease resistance protein | 0 | 100.0 | 100.0 | 100.0 | R | KOG0619 | FOG: Leucine rich repeat | 1.00E-127 | 89.5 | 32.2 | 47.0 | - | - | - | - | - | Solyc09g005080.1.1 | 3RIZ | gi|345100882|pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomaingi|345100883|pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With Brassinolide | 5.00E-46 | 67.8 | 18.0 | 26.5 | Name=PF00560;length=23;Note=LRR_1;Dbxref=PFAM:PF00560;database=PFAM |
| solcap_snp_sl_17546 | I | SL2.40ch09 | 49131 | exon | R | A | G | - | ctT | ctC | L | L | sSNP | Solyc09g005080.1.1 | # | GAAACATTCCCAGCAGAATCCTTTGAAGGAAACAGAGGCCTATGCGGGCT[T/C]CCTCTTAACGTCATTTGCAAAAGCGATACTTCAGAGTTGAAACCAGCACC | 0.4 | 0.22 | 0 | 0.18 | 0.29 | CC | CC | CC | CC | CC | CC | CC | CC | TT | CC | CC | CC | CC | TT | TT | CC | CC | CC | TT | TC | TT | TT | TT | CC | CC | CC | CC | CC | TT | TT | CC | TC | TT | CC | CC | CC | CC | CC | CC | CC | - | - | - | gi|237899607|gb|ACR33108.1| verticillium wilt disease resistance protein [Solanum lycopersicum]gi|237899611|gb|ACR33110.1| verticillium wilt disease resistance protein [Solanum lycopersicum]gi|237899613|gb|ACR33111.1| verticillium wilt disease resistance protein [Solanum lycopersicum] | verticillium wilt disease resistance protein | 0 | 100.0 | 100.0 | 100.0 | R | KOG0619 | FOG: Leucine rich repeat | 1.00E-127 | 89.5 | 32.2 | 47.0 | - | - | - | - | - | Solyc09g005080.1.1 | 3RIZ | gi|345100882|pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomaingi|345100883|pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With Brassinolide | 5.00E-46 | 67.8 | 18.0 | 26.5 | Name=PF00560;length=23;Note=LRR_1;Dbxref=PFAM:PF00560;database=PFAM |
| solcap_snp_sl_44803 | I | SL2.40ch09 | 60760 | exon | R | A | G | + | Acc | Gcc | T | A | cSNP | Solyc09g005100.2.1 | # | CTTTTTTTTGAGAAACTTCATTATACCAAGTTGGACTTTGGCATCTGAGG[T/C]TTTCTGGCCGAAAAAGCCTGGTGGAAGTTTATCTGATGGACCAAGTGAAG | 0.32 | 0.38 | 0 | 0 | 0 | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | CC | CC | CC | CC | CC | TT | TT | CC | TT | TT | CC | CC | TT | TT | TT | TT | TT | - | - | - | gi|255579308|ref|XP_002530499.1| aprataxin, putative [Ricinus communis]gi|223529956|gb|EEF31883.1| aprataxin, putative [Ricinus communis] | aprataxin, putative | 0 | 100.4 | 62.9 | 73.7 | L | KOG2134 | Polynucleotide kinase 3' phosphatase | 1.00E-170 | 67.2 | 39.3 | 46.0 | K10863_vvi-100259037 | 0 | 112.7 | 66.8 | 77.7 | Solyc09g005100.2.1 | 3SPD | gi|350610570|pdb|3SPD|A Chain A, Crystal Structure Of Aprataxin Ortholog Hnt3 In Complex With Dnagi|350610571|pdb|3SPD|B Chain B, Crystal Structure Of Aprataxin Ortholog Hnt3 In Complex With Dnagi|350610572|pdb|3SPD|C Chain C, Crystal Structure Of Aprataxin Ortholog Hnt3 In Complex With Dnagi|350610573|pdb|3SPD|D Chain D, Crystal Structure Of Aprataxin Ortholog Hnt3 In Complex With Dnagi|350610580|pdb|3SPL|A Chain A, Crystal Structure Of Aprataxin Ortholog Hnt3 In Complex With Dna And Ampgi|350610581|pdb|3SPL|B Chain B, Crystal Structure Of Aprataxin Ortholog Hnt3 In Complex With Dna And Ampgi|350610582|pdb|3SPL|C Chain C, Crystal Structure Of Aprataxin Ortholog Hnt3 In Complex With Dna And Ampgi|350610583|pdb|3SPL|D Chain D, Crystal Structure Of Aprataxin Ortholog Hnt3 In Complex With Dna And Amp | 3.00E-17 | 27.3 | 7.8 | 12.7 | Name=IPR011151;Note=Histidine triad motif |
| solcap_snp_sl_17543 | I | SL2.40ch09 | 64325 | exon | Y | T | C | - | tAa | tGa | * | * | sSNP | Solyc09g005110.2.1 | # | ATGGGGTTCTAGGGTCTCAGCAGCTAATAGTCGTCCACCAAATCCACAGT[A/G]AAATGTTCAAAGAATATTGAATTTGCTGCAAAGAATTCTTGCAATTTGAG | 0.49 | 0 | 0 | 0.18 | 0.29 | GG | GG | GG | GG | GG | GG | GG | GG | AA | GG | GG | GG | GG | AA | AA | GG | GG | GG | AA | AG | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AG | AA | AA | AA | AA | AA | AA | -- | -- | - | - | - | gi|29373077|gb|AAO72533.1| pyruvate decarboxylase 1 [Lotus corniculatus] | pyruvate decarboxylase 1 | 0 | 101.0 | 85.0 | 92.2 | EH | KOG1184 | Thiamine pyrophosphate-requiring enzyme | 0 | 101.2 | 83.0 | 90.5 | K01568_pop-POPTR_835585 | 0 | 100.8 | 84.7 | 92.5 | Solyc09g005110.2.1 | 2VBI | gi|178847304|pdb|2VBI|A Chain A, Holostructure Of Pyruvate Decarboxylase From Acetobacter Pasteurianusgi|178847305|pdb|2VBI|B Chain B, Holostructure Of Pyruvate Decarboxylase From Acetobacter Pasteurianusgi|178847306|pdb|2VBI|C Chain C, Holostructure Of Pyruvate Decarboxylase From Acetobacter Pasteurianusgi|178847307|pdb|2VBI|D Chain D, Holostructure Of Pyruvate Decarboxylase From Acetobacter Pasteurianusgi|178847308|pdb|2VBI|E Chain E, Holostructure Of Pyruvate Decarboxylase From Acetobacter Pasteurianusgi|178847309|pdb|2VBI|F Chain F, Holostructure Of Pyruvate Decarboxylase From Acetobacter Pasteurianusgi|178847310|pdb|2VBI|G Chain G, Holostructure Of Pyruvate Decarboxylase From Acetobacter Pasteurianusgi|178847311|pdb|2VBI|H Chain H, Holostructure Of Pyruvate Decarboxylase From Acetobacter Pasteurianus | 1.00E-128 | 94.3 | 40.7 | 56.0 | Name=IPR012001;Note=Thiamine pyrophosphate enzyme%2C N-terminal TPP binding region |
| solcap_snp_sl_17540 | I | SL2.40ch09 | 72211 | exon | R | G | A | - | ggC | ggT | G | G | sSNP | Solyc09g005120.2.1 | # | GGTGGTATGGGTGGACAAGGAGGTGGAAAATCATTTTCATTTTCCTTTGG[T/C]GGTCCTGGCAGCCAAAGCTCTTCTGGCTTTGGTTTAGATGATATATTCTC | 0.39 | 0 | 0 | 0.18 | 0.5 | TT | TT | TT | TT | CC | TT | CC | CC | CC | CC | CC | TT | TT | CC | CC | TT | TT | TT | CC | TC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | - | - | - | gi|255579312|ref|XP_002530501.1| heat shock protein binding protein, putative [Ricinus communis]gi|223529958|gb|EEF31885.1| heat shock protein binding protein, putative [Ricinus communis] | heat shock protein binding protein, putative | 0 | 101.2 | 63.1 | 77.4 | O | KOG0714 | Molecular chaperone (DnaJ superfamily) | 1.00E-179 | 99.7 | 59.1 | 74.6 | - | - | - | - | - | Solyc09g005120.2.1 | 2CUG | gi|159163963|pdb|2CUG|A Chain A, Solution Structure Of The J Domain Of The Pseudo Dnaj Protein, Mouse Hypothetical Mkiaa0962 | 5.00E-19 | 15.3 | 7.0 | 9.6 | Name=IPR018253;Note=Heat shock protein DnaJ%2C conserved site |
| solcap_snp_sl_17539 | I | SL2.40ch09 | 86887 | exon | Y | T | C | + | ctT | ctC | L | L | sSNP | Solyc09g005130.2.1 | # | AATATATTACACAGGAGTACAACCCGGTCAGTAGGCAAAAGGGAAGTAAG[A/G]AGGCCAGCAACCGTACTAGATATGTTTTGCTTCATCTGCTCAAATGTAAC | 0.48 | 0 | 0 | 0.18 | 0.29 | GG | GG | GG | GG | GG | GG | GG | GG | AA | GG | GG | GG | GG | AA | AA | GG | GG | GG | AA | AG | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AG | AA | AA | AA | -- | AA | AA | AA | AA | 0.011 | Xpo1 | Exportin 1-like protein | gi|255579314|ref|XP_002530502.1| importin, putative [Ricinus communis]gi|223529959|gb|EEF31886.1| importin, putative [Ricinus communis] | importin, putative | 0 | 100.6 | 75.4 | 88.3 | YU | KOG1993 | Nuclear transport receptor KAP120 (importin beta superfamily) | 0 | 75.0 | 39.2 | 48.4 | - | - | - | - | - | Solyc09g005130.2.1 | - | - | - | - | - | - | Name=IPR016024;Note=Armadillo-type fold |
| solcap_snp_sl_17538 | I | SL2.40ch09 | 93104 | exon | R | A | G | + | aAt | aGt | N | S | cSNP | Solyc09g005130.2.1 | # | CTAGAATGTCAATGACTGGAATAACTGAGAGTAGTCCCCTGTCATTGACA[T/C]TCCCAACCACCAGATCTAGAAGTTTAGCAATATTAGACGCATGCAAACTG | 0.39 | 0 | 0 | 0.18 | 0.5 | CC | CC | CC | CC | TT | CC | TT | TT | TT | TT | TT | CC | CC | TT | TT | CC | CC | CC | TT | TC | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | - | - | - | gi|255579314|ref|XP_002530502.1| importin, putative [Ricinus communis]gi|223529959|gb|EEF31886.1| importin, putative [Ricinus communis] | importin, putative | 0 | 100.6 | 75.4 | 88.3 | YU | KOG1993 | Nuclear transport receptor KAP120 (importin beta superfamily) | 0 | 75.0 | 39.2 | 48.4 | - | - | - | - | - | Solyc09g005130.2.1 | - | - | - | - | - | - | Name=IPR016024;Note=Armadillo-type fold |
| solcap_snp_sl_17536 | I | SL2.40ch09 | 169553 | 3utr | W | T | A | + | # | # | # | # | uSNP | Solyc09g005200.2.1 | # | TAAATCCAATCACAATCAACATGAGATAGGTTGAAGAAATTCATAAATTT[A/T]CAAATACGTCTAGTTTAGGCTTAGAGCAGAGGAGTAGCACAAGAGGTACA | 0.33 | 0 | 0 | 0.48 | 0.29 | TT | TT | TT | TT | TT | TT | TT | TT | AA | TT | TT | TT | TT | AA | AA | TT | TT | TT | AA | AT | AT | AT | AT | TT | TT | TT | TT | TT | AA | AA | TT | AT | TT | TT | TT | TT | TT | TT | TT | TT | - | - | - | gi|255557899|ref|XP_002519978.1| Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis]gi|223540742|gb|EEF42302.1| Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis] | Protein kinase APK1B, chloroplast precursor, putative | 1.00E-18 | 392.6 | 36.8 | 44.1 | - | - | - | - | - | - | - | - | - | Solyc09g005200.2.1 | - | - | - | - | - | - | # | |||
| solcap_snp_sl_28415 | I | SL2.40ch09 | 175051 | 3utr | R | A | G | - | # | # | # | # | uSNP | Solyc09g005230.2.1 | # | TTGCAACTAATCAACTTAGTTCAGGCTCAGTGAAGTGATAATCATGTTGT[T/C]TTGACAAAGCTCGAGCATAACTTGAAAAATAAGAAACCCTTGTCAATTTG | 0.41 | 0.5 | 0 | 0.48 | 0.29 | CC | CC | CC | CC | CC | CC | CC | CC | TT | CC | CC | CC | CC | TT | TT | CC | CC | CC | TT | TC | TC | TC | TC | CC | CC | CC | CC | CC | TT | TT | CC | TC | TT | CC | CC | -- | -- | TT | -- | -- | - | - | - | - | - | - | - | - | - | S | KOG4249 | Uncharacterized conserved protein | 1.00E-114 | 89.8 | 45.0 | 54.8 | - | - | - | - | - | Solyc09g005230.2.1 | - | - | - | - | - | - | Name=IPR006968;Note=Protein of unknown function DUF647 |
| solcap_snp_sl_17532 | I | SL2.40ch09 | 193605 | exon | S | G | C | - | Caa | Gaa | Q | E | cSNP | Solyc09g005260.2.1 | # | CTTTGATGTTTCGTTATGCTGGAGTTGGAGAATCAGCAGCAATAACAGCA[C/G]AAGCAACATTGAATCTATCAAGAGTTAGCTGCATTGTTATGCTTCTTGCT | 0.48 | 0 | 0 | 0.18 | 0.29 | GG | GG | GG | GG | GG | GG | GG | GG | CC | GG | GG | GG | GG | CC | CC | GG | GG | GG | CC | GC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | GC | CC | CC | CC | CC | CC | CC | CC | CC | 2.80E-43 | Na_Ca_ex | Sodium/calcium exchanger protein | gi|255574373|ref|XP_002528100.1| Vacuolar cation/proton exchanger 1a, putative [Ricinus communis]gi|223532489|gb|EEF34279.1| Vacuolar cation/proton exchanger 1a, putative [Ricinus communis] | Vacuolar cation/proton exchanger 1a, putative | 0 | 98.9 | 75.3 | 86.1 | P | KOG1397 | Ca2+/H+ antiporter VCX1 and related proteins | 1.00E-165 | 102.0 | 68.1 | 79.7 | K07300_rcu-RCOM_0643910 | 0 | 98.9 | 75.3 | 86.1 | Solyc09g005260.2.1 | - | No_hits | - | - | - | - | Name=IPR004713;Note=Calcium/proton exchanger |
| solcap_snp_sl_17531 | I | SL2.40ch09 | 193663 | exon | R | G | A | - | caC | caT | H | H | sSNP | Solyc09g005260.2.1 | # | AAACAAGCAGATGTGAACTCTCTACTTTTATTATTGGGATTATTATGTCA[T/C]GTGTTGCCTTTGATGTTTCGTTATGCTGGAGTTGGAGAATCAGCAGCAAT | 0.33 | 0 | 0 | 0.48 | 0.29 | TT | TT | TT | TT | TT | TT | TT | TT | CC | TT | TT | TT | TT | CC | CC | TT | TT | TT | CC | TC | TC | TC | TC | TT | TT | TT | TT | TT | CC | CC | TT | TC | TT | TT | TT | TT | TT | TT | TT | TT | 2.80E-43 | Na_Ca_ex | Sodium/calcium exchanger protein | gi|255574373|ref|XP_002528100.1| Vacuolar cation/proton exchanger 1a, putative [Ricinus communis]gi|223532489|gb|EEF34279.1| Vacuolar cation/proton exchanger 1a, putative [Ricinus communis] | Vacuolar cation/proton exchanger 1a, putative | 0 | 98.9 | 75.3 | 86.1 | P | KOG1397 | Ca2+/H+ antiporter VCX1 and related proteins | 1.00E-165 | 102.0 | 68.1 | 79.7 | K07300_rcu-RCOM_0643910 | 0 | 98.9 | 75.3 | 86.1 | Solyc09g005260.2.1 | - | No_hits | - | - | - | - | Name=IPR004713;Note=Calcium/proton exchanger |
| solcap_snp_sl_44795 | I | SL2.40ch09 | 224130 | 3utr | R | A | G | + | # | # | # | # | uSNP | Solyc09g005290.1.1 | # | CAGTGCTATGTTCGTTTGTCCACTTGCAACTTTCCATGTAACTCTCTGTA[T/C]CATTACATATTTATAGTGAGAATGAGAAAATAGCCAAAAATATCAATCTG | 0.46 | 0.22 | 0 | 0.42 | 0 | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TC | TC | TC | CC | CC | CC | CC | CC | TT | TT | CC | TT | TT | CC | CC | CC | CC | CC | CC | CC | - | - | - | gi|224130338|ref|XP_002328584.1| nbs-lrr resistance protein [Populus trichocarpa]gi|222838566|gb|EEE76931.1| nbs-lrr resistance protein [Populus trichocarpa] | nbs-lrr resistance protein | 0 | 96.8 | 42.6 | 61.3 | T | KOG4658 | Apoptotic ATPase | 1.00E-119 | 112.6 | 32.1 | 49.9 | K13457_rcu-RCOM_0742270 | 2.00E-69 | 100.1 | 27.6 | 46.0 | Solyc09g005290.1.1 | - | - | - | - | - | - | Name=PF00560;length=23;Note=LRR_1;Dbxref=PFAM:PF00560;database=PFAM |
| 13624_1696 | G | SL2.40ch09 | 224443 | exon | R | G | A | - | Ctg | Ttg | L | L | sSNP | Solyc09g005300.2.1 | # | AAGCGAGGGCAACCGGATCAAACACGAAGAAACCCTAGACGAGACAAAGGCAAGATGCAA[T/C]TGACAAAAGACGATATTGAGAATGTTAACGGTGCAGTNTAGTGCCGAAACGACTGTTATG | 0.2 | 0 | 0 | 0 | 0 | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | TT | TT | CC | TT | CC | CC | - | - | - | gi|255574992|ref|XP_002528402.1| mRNA (guanine-7-)methyltransferase, putative [Ricinus communis]gi|223532190|gb|EEF33995.1| mRNA (guanine-7-)methyltransferase, putative [Ricinus communis] | mRNA (guanine-7-)methyltransferase, putative | 0 | 98.4 | 82.3 | 90.9 | A | KOG1975 | mRNA cap methyltransferase | 1.00E-168 | 97.1 | 73.5 | 80.7 | K00565_vvi-100243615 | 0 | 99.7 | 85.3 | 93.6 | Solyc09g005300.2.1 | 3BGV | gi|161761242|pdb|3BGV|A Chain A, Crystal Structure Of Mrna Cap Guanine-N7 Methyltransferase In Complex With Sahgi|161761243|pdb|3BGV|B Chain B, Crystal Structure Of Mrna Cap Guanine-N7 Methyltransferase In Complex With Sahgi|161761244|pdb|3BGV|C Chain C, Crystal Structure Of Mrna Cap Guanine-N7 Methyltransferase In Complex With Sahgi|161761245|pdb|3BGV|D Chain D, Crystal Structure Of Mrna Cap Guanine-N7 Methyltransferase In Complex With Sahgi|209870564|pdb|3EPP|A Chain A, Crystal Structure Of Mrna Cap Guanine-N7 Methyltransferase (Rnmt) In Complex With Sinefungingi|209870565|pdb|3EPP|B Chain B, Crystal Structure Of Mrna Cap Guanine-N7 Methyltransferase (Rnmt) In Complex With Sinefungin | 1.00E-48 | 83.9 | 30.6 | 44.2 | Name=IPR004971;Note=mRNA capping enzyme%2C large subunit | |||||||||||||
| solcap_snp_sl_28414 | I | SL2.40ch09 | 237990 | exon | Y | T | C | - | ccA | ccG | P | P | sSNP | Solyc09g005310.2.1 | # | AAGGCAGACTTCACTGTAAGACACCTGTCATCAGCCACCACTTCATTTCC[A/G]AATTCATTTGATTTTAACAATGGTCAACAATGTATTGGAAACGGTGCCCG | 0.1 | 0 | 0 | 0 | 0.21 | GG | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | GG | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | 1.20E-118 | LMBR1 | LMBR1-like membrane protein | gi|297810257|ref|XP_002873012.1| LMBR1 integral membrane family protein [Arabidopsis lyrata subsp. lyrata]gi|297318849|gb|EFH49271.1| LMBR1 integral membrane family protein [Arabidopsis lyrata subsp. lyrata] | LMBR1 integral membrane family protein | 0 | 100.0 | 85.3 | 94.7 | - | noCOG | 0 | 100.0 | 85.1 | 94.5 | K14617_vvi-100251150 | 0 | 100.0 | 88.4 | 95.5 | Solyc09g005310.2.1 | - | No_hits | - | - | - | - | Name=IPR006876;Note=LMBR1-like conserved region | |
| solcap_snp_sl_17526 | I | SL2.40ch09 | 239839 | exon | W | T | A | - | gcA | gcT | A | A | sSNP | Solyc09g005310.2.1 | # | TTCGTAGTCAATGTCTATCTTCTCATCAATTATCAGCACCCTGATGATGC[A/T]AATCAAGCCTATTTCCCCAAATTTGTTGTCGTTTTTGGCTTATCAGTCGC | 0.33 | 0 | 0 | 0.48 | 0.29 | TT | TT | TT | TT | TT | TT | TT | TT | AA | TT | TT | TT | TT | AA | AA | TT | TT | TT | AA | TA | TA | TA | TA | TT | TT | TT | TT | TT | AA | AA | TT | TA | TT | TT | TT | TT | TT | TT | TT | TT | 1.20E-118 | LMBR1 | LMBR1-like membrane protein | gi|297810257|ref|XP_002873012.1| LMBR1 integral membrane family protein [Arabidopsis lyrata subsp. lyrata]gi|297318849|gb|EFH49271.1| LMBR1 integral membrane family protein [Arabidopsis lyrata subsp. lyrata] | LMBR1 integral membrane family protein | 0 | 100.0 | 85.3 | 94.7 | - | noCOG | 0 | 100.0 | 85.1 | 94.5 | K14617_vvi-100251150 | 0 | 100.0 | 88.4 | 95.5 | Solyc09g005310.2.1 | - | No_hits | - | - | - | - | Name=IPR006876;Note=LMBR1-like conserved region | |
| solcap_snp_sl_17525 | I | SL2.40ch09 | 259326 | exon | Y | C | T | + | ttC | ttT | F | F | sSNP | Solyc09g005330.2.1 | # | ACTGCAAGTAAAAATGTTTCATATACGGATGCTGCAGCTGTTGAAGAAAA[A/G]AAATCCTGGTCTTCTTCTGCATGCCCATACAACCTGTAGAGGACACGCAA | 0.49 | 0.22 | 0 | 0.18 | 0.29 | AA | AA | AA | AA | AA | AA | AA | AA | GG | AA | AA | AA | AA | GG | GG | AA | AA | AA | GG | AG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | AG | GG | AA | GG | GG | GG | GG | GG | GG | - | - | - | gi|255574351|ref|XP_002528089.1| symplekin, putative [Ricinus communis]gi|223532478|gb|EEF34268.1| symplekin, putative [Ricinus communis] | symplekin, putative | 0 | 150.2 | 53.2 | 68.0 | A | KOG1895 | mRNA cleavage and polyadenylation factor II complex, subunit PTA1 | 0 | 164.3 | 47.8 | 62.3 | K06100_osa-4344390 | 1.00E-159 | 139.4 | 41.0 | 57.7 | Solyc09g005330.2.1 | 3ODR | gi|308198654|pdb|3ODR|A Chain A, Crystal Structure Of The N-Terminal Domain Of Human Symplekin | 2.00E-12 | 46.5 | 9.3 | 16.3 | Name=IPR016024;Note=Armadillo-type fold |
| solcap_snp_sl_28412 | I | SL2.40ch09 | 271106 | 5utr | R | G | A | + | # | # | # | # | rSNP | Solyc09g005350.2.1 | # | TCTCTTACTTTATCTCTCTCTCTCTCCGACGAGGCACCGGACGGAGCTTT[T/C]GCTTTCACTCTGGATGAGTAACGGGAAATTAATCCAGTTGGGAGTTTCTA | 0.38 | 0.3 | 0 | 0.48 | 0.29 | TT | TT | TT | TT | TT | TT | TT | TT | CC | TT | TT | TT | TT | CC | CC | TT | TT | TT | CC | TC | TC | TC | TC | TT | TT | TT | TT | TT | CC | CC | TT | TC | TT | TT | CC | TT | TC | TT | TT | TT | - | - | - | gi|255574345|ref|XP_002528086.1| Protein SIS1, putative [Ricinus communis]gi|223532475|gb|EEF34265.1| Protein SIS1, putative [Ricinus communis] | Protein SIS1, putative | 1.00E-158 | 99.7 | 80.9 | 89.7 | O | KOG0714 | Molecular chaperone (DnaJ superfamily) | 1.00E-144 | 95.0 | 76.2 | 85.6 | K09510_rcu-RCOM_1172180 | 1.00E-137 | 100.6 | 74.1 | 84.1 | Solyc09g005350.2.1 | 3AGZ | gi|323714388|pdb|3AGZ|A Chain A, Crystal Structure Of Human Hsp40 Hdj1 Peptide-Binding Domain Complexed With A C-Terminal Peptide Of Hsp70gi|323714389|pdb|3AGZ|B Chain B, Crystal Structure Of Human Hsp40 Hdj1 Peptide-Binding Domain Complexed With A C-Terminal Peptide Of Hsp70 | 1.00E-38 | 55.9 | 21.8 | 34.4 | Name=IPR018253;Note=Heat shock protein DnaJ%2C conserved site |
| solcap_snp_sl_17524 | I | SL2.40ch09 | 271936 | exon | W | A | T | + | tcA | tcT | S | S | sSNP | Solyc09g005350.2.1 | # | CTACAAGGAAGTGCCCGCTCTATAGGAGCGGCCTTTCGTGGAGCATTACC[A/T]GATGCACCTTCGCCAGCAGCATTCCTGAATGAAGTGAAAATATCTTCCCC | 0.36 | 0.22 | 0 | 0.48 | 0.29 | AA | AA | AA | AA | AA | AA | AA | AA | TT | AA | AA | AA | AA | TT | TT | AA | AA | AA | TT | TA | TA | TA | TA | AA | AA | AA | AA | AA | TT | TT | AA | TA | AA | AA | TT | AA | AA | AA | AA | AA | - | - | - | gi|255574345|ref|XP_002528086.1| Protein SIS1, putative [Ricinus communis]gi|223532475|gb|EEF34265.1| Protein SIS1, putative [Ricinus communis] | Protein SIS1, putative | 1.00E-158 | 99.7 | 80.9 | 89.7 | O | KOG0714 | Molecular chaperone (DnaJ superfamily) | 1.00E-144 | 95.0 | 76.2 | 85.6 | K09510_rcu-RCOM_1172180 | 1.00E-137 | 100.6 | 74.1 | 84.1 | Solyc09g005350.2.1 | 3AGZ | gi|323714388|pdb|3AGZ|A Chain A, Crystal Structure Of Human Hsp40 Hdj1 Peptide-Binding Domain Complexed With A C-Terminal Peptide Of Hsp70gi|323714389|pdb|3AGZ|B Chain B, Crystal Structure Of Human Hsp40 Hdj1 Peptide-Binding Domain Complexed With A C-Terminal Peptide Of Hsp70 | 1.00E-38 | 55.9 | 21.8 | 34.4 | Name=IPR018253;Note=Heat shock protein DnaJ%2C conserved site |
| solcap_snp_sl_17523 | I | SL2.40ch09 | 275955 | exon | M | C | A | + | gcC | gcA | A | A | sSNP | Solyc09g005350.2.1 | # | ATGGAATTAATTGGTACAGTTAGATTCCGGCCATCAAGGGTTGTTATTTG[T/G]GCAGTGTATCCAGTAAGAGCCTCTACCAAGGGGATTTTCTGGGTGACAAC | 0.36 | 0.22 | 0 | 0.48 | 0.29 | TT | TT | TT | TT | TT | TT | TT | TT | GG | TT | TT | TT | TT | GG | GG | TT | TT | TT | GG | TG | TG | TG | TG | TT | TT | TT | TT | TT | GG | GG | TT | TG | TT | TT | GG | TT | TT | TT | TT | TT | 1.60E-26 | DnaJ_C | DnaJ C terminal domain | gi|255574345|ref|XP_002528086.1| Protein SIS1, putative [Ricinus communis]gi|223532475|gb|EEF34265.1| Protein SIS1, putative [Ricinus communis] | Protein SIS1, putative | 1.00E-158 | 99.7 | 80.9 | 89.7 | O | KOG0714 | Molecular chaperone (DnaJ superfamily) | 1.00E-144 | 95.0 | 76.2 | 85.6 | K09510_rcu-RCOM_1172180 | 1.00E-137 | 100.6 | 74.1 | 84.1 | Solyc09g005350.2.1 | 3AGZ | gi|323714388|pdb|3AGZ|A Chain A, Crystal Structure Of Human Hsp40 Hdj1 Peptide-Binding Domain Complexed With A C-Terminal Peptide Of Hsp70gi|323714389|pdb|3AGZ|B Chain B, Crystal Structure Of Human Hsp40 Hdj1 Peptide-Binding Domain Complexed With A C-Terminal Peptide Of Hsp70 | 1.00E-38 | 55.9 | 21.8 | 34.4 | Name=IPR018253;Note=Heat shock protein DnaJ%2C conserved site |
| solcap_snp_sl_17522 | I | SL2.40ch09 | 276111 | exon | Y | C | T | + | ccC | ccT | P | P | sSNP | Solyc09g005350.2.1 | # | CATGTCAAGTACCGCTTTATGCCAGCTTTCTGCTCAGAAGTAAGCTTGCT[A/G]GGGAACTTGATGTTAAACTTTACTCTCAAGTTGCCTTTTCTGCTAGGTTC | 0.49 | 0.22 | 0 | 0.18 | 0.29 | AA | AA | AA | AA | AA | AA | AA | AA | GG | AA | AA | AA | AA | GG | GG | AA | AA | AA | GG | AG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | AG | GG | GG | GG | AA | GG | GG | GG | GG | 1.60E-26 | DnaJ_C | DnaJ C terminal domain | gi|255574345|ref|XP_002528086.1| Protein SIS1, putative [Ricinus communis]gi|223532475|gb|EEF34265.1| Protein SIS1, putative [Ricinus communis] | Protein SIS1, putative | 1.00E-158 | 99.7 | 80.9 | 89.7 | O | KOG0714 | Molecular chaperone (DnaJ superfamily) | 1.00E-144 | 95.0 | 76.2 | 85.6 | K09510_rcu-RCOM_1172180 | 1.00E-137 | 100.6 | 74.1 | 84.1 | Solyc09g005350.2.1 | 3AGZ | gi|323714388|pdb|3AGZ|A Chain A, Crystal Structure Of Human Hsp40 Hdj1 Peptide-Binding Domain Complexed With A C-Terminal Peptide Of Hsp70gi|323714389|pdb|3AGZ|B Chain B, Crystal Structure Of Human Hsp40 Hdj1 Peptide-Binding Domain Complexed With A C-Terminal Peptide Of Hsp70 | 1.00E-38 | 55.9 | 21.8 | 34.4 | Name=IPR018253;Note=Heat shock protein DnaJ%2C conserved site |
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