SL2.40ch09

[Graphical Genotypes] (1 / 27 page)

HMMscan nr KOG KEGG PDB ITAG2.3
SNP ID Array type
( I: Infinium
G: Goldengate)
Chromosome Position on the SL2.40 Location IUPAC SNP genotype (Heinz 1706-BG) SNP genotype (Mutation) Strand Codon (Heinz 1706-BG) Codon (Mutation) Amino acid residue (Heinz 1706-BG) Amino acid residue (Mutation) SNP category ITAG gene model Functional site Flanking sequences on SNP HZ (The 40 lines) HZ (cluster 1) HZ (cluster 2) HZ (cluster 3) HZ (cluster 4) San Marzano Rutgers Ponderosa Aichi First S. lycopersicum var cerasiforme (WIR25/30) S. lycopersicum var cerasiforme (TOMJPF00009) Earliana Best Of All Money Maker Ailsa Craig LA925 Fruit Rio Grande Marglobe Heinz 1706-BG Tomato Chuukanbohon Nou 9 Furikoma Tomato Chuukanbohon Nou 11 Reika Momotaro 8 Labell Matrix Geronimo Micro-Tom_AM Micro-Tom TGRC (LA3911) Micro-Tom_MM Micro-Tom Micro-Tom NBRP (TOMJPF00001) M82_MM M82 Regina Sweet100 S. pimpinellifolium (TOMJPF00012) S. pimpinellifolium (LS1513) S. pimpinellifolium (PI344102) S. chilense (LA1958) S. peruvianum (WIR2020) S. peruvianum (TOMJPF00010) S. pennellii (TOMJPF00008) S. pennellii (LA716) E-value Model HMMscan definition nr definition Product (KDRI) E-value Length% Identity% Positive% KOG id KOG No. KOG definition E-value Length% Identity% Positive% KO E-value Length% Identity% Positive% Gene name
[structural model (tomato)]
(Structures with links can be browsed by Jmol.)
PDB id PDB definition E-value Length% Identity% Positive% ITAG (interpro)
solcap_snp_sl_17547 I SL2.40ch09 48822 exon M C A - ggG ggT G G sSNP Solyc09g005080.1.1 # GAACACTATGAAGATGAGACCCCAGATGACACCGAAGATGACGATGAGGG[T/G]GGAAAAGAAGCATCTCTTGGGCGTTATTGTGTCTTCTGTAGTAAACTTGA 0.48 0 0 0.18 0.29 TT TT TT TT TT TT TT TT GG TT TT TT TT GG GG TT TT TT GG TG GG GG GG GG GG GG GG GG GG GG GG TG GG GG GG GG GG GG GG GG - - - gi|237899607|gb|ACR33108.1| verticillium wilt disease resistance protein [Solanum lycopersicum]gi|237899611|gb|ACR33110.1| verticillium wilt disease resistance protein [Solanum lycopersicum]gi|237899613|gb|ACR33111.1| verticillium wilt disease resistance protein [Solanum lycopersicum] verticillium wilt disease resistance protein 0 100.0 100.0 100.0 R KOG0619 FOG: Leucine rich repeat 1.00E-127 89.5 32.2 47.0 - - - - - Solyc09g005080.1.1 3RIZ gi|345100882|pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomaingi|345100883|pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With Brassinolide 5.00E-46 67.8 18.0 26.5 Name=PF00560;length=23;Note=LRR_1;Dbxref=PFAM:PF00560;database=PFAM
solcap_snp_sl_17546 I SL2.40ch09 49131 exon R A G - ctT ctC L L sSNP Solyc09g005080.1.1 # GAAACATTCCCAGCAGAATCCTTTGAAGGAAACAGAGGCCTATGCGGGCT[T/C]CCTCTTAACGTCATTTGCAAAAGCGATACTTCAGAGTTGAAACCAGCACC 0.4 0.22 0 0.18 0.29 CC CC CC CC CC CC CC CC TT CC CC CC CC TT TT CC CC CC TT TC TT TT TT CC CC CC CC CC TT TT CC TC TT CC CC CC CC CC CC CC - - - gi|237899607|gb|ACR33108.1| verticillium wilt disease resistance protein [Solanum lycopersicum]gi|237899611|gb|ACR33110.1| verticillium wilt disease resistance protein [Solanum lycopersicum]gi|237899613|gb|ACR33111.1| verticillium wilt disease resistance protein [Solanum lycopersicum] verticillium wilt disease resistance protein 0 100.0 100.0 100.0 R KOG0619 FOG: Leucine rich repeat 1.00E-127 89.5 32.2 47.0 - - - - - Solyc09g005080.1.1 3RIZ gi|345100882|pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomaingi|345100883|pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With Brassinolide 5.00E-46 67.8 18.0 26.5 Name=PF00560;length=23;Note=LRR_1;Dbxref=PFAM:PF00560;database=PFAM
solcap_snp_sl_44803 I SL2.40ch09 60760 exon R A G + Acc Gcc T A cSNP Solyc09g005100.2.1 # CTTTTTTTTGAGAAACTTCATTATACCAAGTTGGACTTTGGCATCTGAGG[T/C]TTTCTGGCCGAAAAAGCCTGGTGGAAGTTTATCTGATGGACCAAGTGAAG 0.32 0.38 0 0 0 TT TT TT TT TT TT TT TT TT TT TT TT TT TT TT TT TT TT TT TT TT TT TT CC CC CC CC CC TT TT CC TT TT CC CC TT TT TT TT TT - - - gi|255579308|ref|XP_002530499.1| aprataxin, putative [Ricinus communis]gi|223529956|gb|EEF31883.1| aprataxin, putative [Ricinus communis] aprataxin, putative 0 100.4 62.9 73.7 L KOG2134 Polynucleotide kinase 3' phosphatase 1.00E-170 67.2 39.3 46.0 K10863_vvi-100259037 0 112.7 66.8 77.7 Solyc09g005100.2.1 3SPD gi|350610570|pdb|3SPD|A Chain A, Crystal Structure Of Aprataxin Ortholog Hnt3 In Complex With Dnagi|350610571|pdb|3SPD|B Chain B, Crystal Structure Of Aprataxin Ortholog Hnt3 In Complex With Dnagi|350610572|pdb|3SPD|C Chain C, Crystal Structure Of Aprataxin Ortholog Hnt3 In Complex With Dnagi|350610573|pdb|3SPD|D Chain D, Crystal Structure Of Aprataxin Ortholog Hnt3 In Complex With Dnagi|350610580|pdb|3SPL|A Chain A, Crystal Structure Of Aprataxin Ortholog Hnt3 In Complex With Dna And Ampgi|350610581|pdb|3SPL|B Chain B, Crystal Structure Of Aprataxin Ortholog Hnt3 In Complex With Dna And Ampgi|350610582|pdb|3SPL|C Chain C, Crystal Structure Of Aprataxin Ortholog Hnt3 In Complex With Dna And Ampgi|350610583|pdb|3SPL|D Chain D, Crystal Structure Of Aprataxin Ortholog Hnt3 In Complex With Dna And Amp 3.00E-17 27.3 7.8 12.7 Name=IPR011151;Note=Histidine triad motif
solcap_snp_sl_17543 I SL2.40ch09 64325 exon Y T C - tAa tGa * * sSNP Solyc09g005110.2.1 # ATGGGGTTCTAGGGTCTCAGCAGCTAATAGTCGTCCACCAAATCCACAGT[A/G]AAATGTTCAAAGAATATTGAATTTGCTGCAAAGAATTCTTGCAATTTGAG 0.49 0 0 0.18 0.29 GG GG GG GG GG GG GG GG AA GG GG GG GG AA AA GG GG GG AA AG AA AA AA AA AA AA AA AA AA AA AA AG AA AA AA AA AA AA -- -- - - - gi|29373077|gb|AAO72533.1| pyruvate decarboxylase 1 [Lotus corniculatus] pyruvate decarboxylase 1 0 101.0 85.0 92.2 EH KOG1184 Thiamine pyrophosphate-requiring enzyme 0 101.2 83.0 90.5 K01568_pop-POPTR_835585 0 100.8 84.7 92.5 Solyc09g005110.2.1 2VBI gi|178847304|pdb|2VBI|A Chain A, Holostructure Of Pyruvate Decarboxylase From Acetobacter Pasteurianusgi|178847305|pdb|2VBI|B Chain B, Holostructure Of Pyruvate Decarboxylase From Acetobacter Pasteurianusgi|178847306|pdb|2VBI|C Chain C, Holostructure Of Pyruvate Decarboxylase From Acetobacter Pasteurianusgi|178847307|pdb|2VBI|D Chain D, Holostructure Of Pyruvate Decarboxylase From Acetobacter Pasteurianusgi|178847308|pdb|2VBI|E Chain E, Holostructure Of Pyruvate Decarboxylase From Acetobacter Pasteurianusgi|178847309|pdb|2VBI|F Chain F, Holostructure Of Pyruvate Decarboxylase From Acetobacter Pasteurianusgi|178847310|pdb|2VBI|G Chain G, Holostructure Of Pyruvate Decarboxylase From Acetobacter Pasteurianusgi|178847311|pdb|2VBI|H Chain H, Holostructure Of Pyruvate Decarboxylase From Acetobacter Pasteurianus 1.00E-128 94.3 40.7 56.0 Name=IPR012001;Note=Thiamine pyrophosphate enzyme%2C N-terminal TPP binding region
solcap_snp_sl_17540 I SL2.40ch09 72211 exon R G A - ggC ggT G G sSNP Solyc09g005120.2.1 # GGTGGTATGGGTGGACAAGGAGGTGGAAAATCATTTTCATTTTCCTTTGG[T/C]GGTCCTGGCAGCCAAAGCTCTTCTGGCTTTGGTTTAGATGATATATTCTC 0.39 0 0 0.18 0.5 TT TT TT TT CC TT CC CC CC CC CC TT TT CC CC TT TT TT CC TC CC CC CC CC CC CC CC CC CC CC CC CC CC CC CC CC CC CC CC CC - - - gi|255579312|ref|XP_002530501.1| heat shock protein binding protein, putative [Ricinus communis]gi|223529958|gb|EEF31885.1| heat shock protein binding protein, putative [Ricinus communis] heat shock protein binding protein, putative 0 101.2 63.1 77.4 O KOG0714 Molecular chaperone (DnaJ superfamily) 1.00E-179 99.7 59.1 74.6 - - - - - Solyc09g005120.2.1 2CUG gi|159163963|pdb|2CUG|A Chain A, Solution Structure Of The J Domain Of The Pseudo Dnaj Protein, Mouse Hypothetical Mkiaa0962 5.00E-19 15.3 7.0 9.6 Name=IPR018253;Note=Heat shock protein DnaJ%2C conserved site
solcap_snp_sl_17539 I SL2.40ch09 86887 exon Y T C + ctT ctC L L sSNP Solyc09g005130.2.1 # AATATATTACACAGGAGTACAACCCGGTCAGTAGGCAAAAGGGAAGTAAG[A/G]AGGCCAGCAACCGTACTAGATATGTTTTGCTTCATCTGCTCAAATGTAAC 0.48 0 0 0.18 0.29 GG GG GG GG GG GG GG GG AA GG GG GG GG AA AA GG GG GG AA AG AA AA AA AA AA AA AA AA AA AA AA AG AA AA AA -- AA AA AA AA 0.011 Xpo1 Exportin 1-like protein gi|255579314|ref|XP_002530502.1| importin, putative [Ricinus communis]gi|223529959|gb|EEF31886.1| importin, putative [Ricinus communis] importin, putative 0 100.6 75.4 88.3 YU KOG1993 Nuclear transport receptor KAP120 (importin beta superfamily) 0 75.0 39.2 48.4 - - - - - Solyc09g005130.2.1 - - - - - - Name=IPR016024;Note=Armadillo-type fold
solcap_snp_sl_17538 I SL2.40ch09 93104 exon R A G + aAt aGt N S cSNP Solyc09g005130.2.1 # CTAGAATGTCAATGACTGGAATAACTGAGAGTAGTCCCCTGTCATTGACA[T/C]TCCCAACCACCAGATCTAGAAGTTTAGCAATATTAGACGCATGCAAACTG 0.39 0 0 0.18 0.5 CC CC CC CC TT CC TT TT TT TT TT CC CC TT TT CC CC CC TT TC TT TT TT TT TT TT TT TT TT TT TT TT TT TT TT TT TT TT TT TT - - - gi|255579314|ref|XP_002530502.1| importin, putative [Ricinus communis]gi|223529959|gb|EEF31886.1| importin, putative [Ricinus communis] importin, putative 0 100.6 75.4 88.3 YU KOG1993 Nuclear transport receptor KAP120 (importin beta superfamily) 0 75.0 39.2 48.4 - - - - - Solyc09g005130.2.1 - - - - - - Name=IPR016024;Note=Armadillo-type fold
solcap_snp_sl_17536 I SL2.40ch09 169553 3utr W T A + # # # # uSNP Solyc09g005200.2.1 # TAAATCCAATCACAATCAACATGAGATAGGTTGAAGAAATTCATAAATTT[A/T]CAAATACGTCTAGTTTAGGCTTAGAGCAGAGGAGTAGCACAAGAGGTACA 0.33 0 0 0.48 0.29 TT TT TT TT TT TT TT TT AA TT TT TT TT AA AA TT TT TT AA AT AT AT AT TT TT TT TT TT AA AA TT AT TT TT TT TT TT TT TT TT - - - gi|255557899|ref|XP_002519978.1| Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis]gi|223540742|gb|EEF42302.1| Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis] Protein kinase APK1B, chloroplast precursor, putative 1.00E-18 392.6 36.8 44.1 - - - - - - - - - Solyc09g005200.2.1 - - - - - - #
solcap_snp_sl_28415 I SL2.40ch09 175051 3utr R A G - # # # # uSNP Solyc09g005230.2.1 # TTGCAACTAATCAACTTAGTTCAGGCTCAGTGAAGTGATAATCATGTTGT[T/C]TTGACAAAGCTCGAGCATAACTTGAAAAATAAGAAACCCTTGTCAATTTG 0.41 0.5 0 0.48 0.29 CC CC CC CC CC CC CC CC TT CC CC CC CC TT TT CC CC CC TT TC TC TC TC CC CC CC CC CC TT TT CC TC TT CC CC -- -- TT -- -- - - - - - - - - - S KOG4249 Uncharacterized conserved protein 1.00E-114 89.8 45.0 54.8 - - - - - Solyc09g005230.2.1 - - - - - - Name=IPR006968;Note=Protein of unknown function DUF647
solcap_snp_sl_17532 I SL2.40ch09 193605 exon S G C - Caa Gaa Q E cSNP Solyc09g005260.2.1 # CTTTGATGTTTCGTTATGCTGGAGTTGGAGAATCAGCAGCAATAACAGCA[C/G]AAGCAACATTGAATCTATCAAGAGTTAGCTGCATTGTTATGCTTCTTGCT 0.48 0 0 0.18 0.29 GG GG GG GG GG GG GG GG CC GG GG GG GG CC CC GG GG GG CC GC CC CC CC CC CC CC CC CC CC CC CC GC CC CC CC CC CC CC CC CC 2.80E-43 Na_Ca_ex Sodium/calcium exchanger protein gi|255574373|ref|XP_002528100.1| Vacuolar cation/proton exchanger 1a, putative [Ricinus communis]gi|223532489|gb|EEF34279.1| Vacuolar cation/proton exchanger 1a, putative [Ricinus communis] Vacuolar cation/proton exchanger 1a, putative 0 98.9 75.3 86.1 P KOG1397 Ca2+/H+ antiporter VCX1 and related proteins 1.00E-165 102.0 68.1 79.7 K07300_rcu-RCOM_0643910 0 98.9 75.3 86.1 Solyc09g005260.2.1 - No_hits - - - - Name=IPR004713;Note=Calcium/proton exchanger
solcap_snp_sl_17531 I SL2.40ch09 193663 exon R G A - caC caT H H sSNP Solyc09g005260.2.1 # AAACAAGCAGATGTGAACTCTCTACTTTTATTATTGGGATTATTATGTCA[T/C]GTGTTGCCTTTGATGTTTCGTTATGCTGGAGTTGGAGAATCAGCAGCAAT 0.33 0 0 0.48 0.29 TT TT TT TT TT TT TT TT CC TT TT TT TT CC CC TT TT TT CC TC TC TC TC TT TT TT TT TT CC CC TT TC TT TT TT TT TT TT TT TT 2.80E-43 Na_Ca_ex Sodium/calcium exchanger protein gi|255574373|ref|XP_002528100.1| Vacuolar cation/proton exchanger 1a, putative [Ricinus communis]gi|223532489|gb|EEF34279.1| Vacuolar cation/proton exchanger 1a, putative [Ricinus communis] Vacuolar cation/proton exchanger 1a, putative 0 98.9 75.3 86.1 P KOG1397 Ca2+/H+ antiporter VCX1 and related proteins 1.00E-165 102.0 68.1 79.7 K07300_rcu-RCOM_0643910 0 98.9 75.3 86.1 Solyc09g005260.2.1 - No_hits - - - - Name=IPR004713;Note=Calcium/proton exchanger
solcap_snp_sl_44795 I SL2.40ch09 224130 3utr R A G + # # # # uSNP Solyc09g005290.1.1 # CAGTGCTATGTTCGTTTGTCCACTTGCAACTTTCCATGTAACTCTCTGTA[T/C]CATTACATATTTATAGTGAGAATGAGAAAATAGCCAAAAATATCAATCTG 0.46 0.22 0 0.42 0 TT TT TT TT TT TT TT TT TT TT TT TT TT TT TT TT TT TT TT TT TC TC TC CC CC CC CC CC TT TT CC TT TT CC CC CC CC CC CC CC - - - gi|224130338|ref|XP_002328584.1| nbs-lrr resistance protein [Populus trichocarpa]gi|222838566|gb|EEE76931.1| nbs-lrr resistance protein [Populus trichocarpa] nbs-lrr resistance protein 0 96.8 42.6 61.3 T KOG4658 Apoptotic ATPase 1.00E-119 112.6 32.1 49.9 K13457_rcu-RCOM_0742270 2.00E-69 100.1 27.6 46.0 Solyc09g005290.1.1 - - - - - - Name=PF00560;length=23;Note=LRR_1;Dbxref=PFAM:PF00560;database=PFAM
13624_1696 G SL2.40ch09 224443 exon R G A - Ctg Ttg L L sSNP Solyc09g005300.2.1 # AAGCGAGGGCAACCGGATCAAACACGAAGAAACCCTAGACGAGACAAAGGCAAGATGCAA[T/C]TGACAAAAGACGATATTGAGAATGTTAACGGTGCAGTNTAGTGCCGAAACGACTGTTATG 0.2 0 0 0 0 CC CC CC CC CC CC CC CC CC CC CC CC CC CC CC CC CC CC CC CC CC TT TT CC TT CC CC - - - gi|255574992|ref|XP_002528402.1| mRNA (guanine-7-)methyltransferase, putative [Ricinus communis]gi|223532190|gb|EEF33995.1| mRNA (guanine-7-)methyltransferase, putative [Ricinus communis] mRNA (guanine-7-)methyltransferase, putative 0 98.4 82.3 90.9 A KOG1975 mRNA cap methyltransferase 1.00E-168 97.1 73.5 80.7 K00565_vvi-100243615 0 99.7 85.3 93.6 Solyc09g005300.2.1 3BGV gi|161761242|pdb|3BGV|A Chain A, Crystal Structure Of Mrna Cap Guanine-N7 Methyltransferase In Complex With Sahgi|161761243|pdb|3BGV|B Chain B, Crystal Structure Of Mrna Cap Guanine-N7 Methyltransferase In Complex With Sahgi|161761244|pdb|3BGV|C Chain C, Crystal Structure Of Mrna Cap Guanine-N7 Methyltransferase In Complex With Sahgi|161761245|pdb|3BGV|D Chain D, Crystal Structure Of Mrna Cap Guanine-N7 Methyltransferase In Complex With Sahgi|209870564|pdb|3EPP|A Chain A, Crystal Structure Of Mrna Cap Guanine-N7 Methyltransferase (Rnmt) In Complex With Sinefungingi|209870565|pdb|3EPP|B Chain B, Crystal Structure Of Mrna Cap Guanine-N7 Methyltransferase (Rnmt) In Complex With Sinefungin 1.00E-48 83.9 30.6 44.2 Name=IPR004971;Note=mRNA capping enzyme%2C large subunit
solcap_snp_sl_28414 I SL2.40ch09 237990 exon Y T C - ccA ccG P P sSNP Solyc09g005310.2.1 # AAGGCAGACTTCACTGTAAGACACCTGTCATCAGCCACCACTTCATTTCC[A/G]AATTCATTTGATTTTAACAATGGTCAACAATGTATTGGAAACGGTGCCCG 0.1 0 0 0 0.21 GG AA AA AA AA AA AA AA AA AA AA AA GG AA AA AA AA AA AA AA AA AA AA AA AA AA AA AA AA AA AA AA AA AA AA AA AA AA AA AA 1.20E-118 LMBR1 LMBR1-like membrane protein gi|297810257|ref|XP_002873012.1| LMBR1 integral membrane family protein [Arabidopsis lyrata subsp. lyrata]gi|297318849|gb|EFH49271.1| LMBR1 integral membrane family protein [Arabidopsis lyrata subsp. lyrata] LMBR1 integral membrane family protein 0 100.0 85.3 94.7 - noCOG 0 100.0 85.1 94.5 K14617_vvi-100251150 0 100.0 88.4 95.5 Solyc09g005310.2.1 - No_hits - - - - Name=IPR006876;Note=LMBR1-like conserved region
solcap_snp_sl_17526 I SL2.40ch09 239839 exon W T A - gcA gcT A A sSNP Solyc09g005310.2.1 # TTCGTAGTCAATGTCTATCTTCTCATCAATTATCAGCACCCTGATGATGC[A/T]AATCAAGCCTATTTCCCCAAATTTGTTGTCGTTTTTGGCTTATCAGTCGC 0.33 0 0 0.48 0.29 TT TT TT TT TT TT TT TT AA TT TT TT TT AA AA TT TT TT AA TA TA TA TA TT TT TT TT TT AA AA TT TA TT TT TT TT TT TT TT TT 1.20E-118 LMBR1 LMBR1-like membrane protein gi|297810257|ref|XP_002873012.1| LMBR1 integral membrane family protein [Arabidopsis lyrata subsp. lyrata]gi|297318849|gb|EFH49271.1| LMBR1 integral membrane family protein [Arabidopsis lyrata subsp. lyrata] LMBR1 integral membrane family protein 0 100.0 85.3 94.7 - noCOG 0 100.0 85.1 94.5 K14617_vvi-100251150 0 100.0 88.4 95.5 Solyc09g005310.2.1 - No_hits - - - - Name=IPR006876;Note=LMBR1-like conserved region
solcap_snp_sl_17525 I SL2.40ch09 259326 exon Y C T + ttC ttT F F sSNP Solyc09g005330.2.1 # ACTGCAAGTAAAAATGTTTCATATACGGATGCTGCAGCTGTTGAAGAAAA[A/G]AAATCCTGGTCTTCTTCTGCATGCCCATACAACCTGTAGAGGACACGCAA 0.49 0.22 0 0.18 0.29 AA AA AA AA AA AA AA AA GG AA AA AA AA GG GG AA AA AA GG AG GG GG GG GG GG GG GG GG GG GG GG AG GG AA GG GG GG GG GG GG - - - gi|255574351|ref|XP_002528089.1| symplekin, putative [Ricinus communis]gi|223532478|gb|EEF34268.1| symplekin, putative [Ricinus communis] symplekin, putative 0 150.2 53.2 68.0 A KOG1895 mRNA cleavage and polyadenylation factor II complex, subunit PTA1 0 164.3 47.8 62.3 K06100_osa-4344390 1.00E-159 139.4 41.0 57.7 Solyc09g005330.2.1 3ODR gi|308198654|pdb|3ODR|A Chain A, Crystal Structure Of The N-Terminal Domain Of Human Symplekin 2.00E-12 46.5 9.3 16.3 Name=IPR016024;Note=Armadillo-type fold
solcap_snp_sl_28412 I SL2.40ch09 271106 5utr R G A + # # # # rSNP Solyc09g005350.2.1 # TCTCTTACTTTATCTCTCTCTCTCTCCGACGAGGCACCGGACGGAGCTTT[T/C]GCTTTCACTCTGGATGAGTAACGGGAAATTAATCCAGTTGGGAGTTTCTA 0.38 0.3 0 0.48 0.29 TT TT TT TT TT TT TT TT CC TT TT TT TT CC CC TT TT TT CC TC TC TC TC TT TT TT TT TT CC CC TT TC TT TT CC TT TC TT TT TT - - - gi|255574345|ref|XP_002528086.1| Protein SIS1, putative [Ricinus communis]gi|223532475|gb|EEF34265.1| Protein SIS1, putative [Ricinus communis] Protein SIS1, putative 1.00E-158 99.7 80.9 89.7 O KOG0714 Molecular chaperone (DnaJ superfamily) 1.00E-144 95.0 76.2 85.6 K09510_rcu-RCOM_1172180 1.00E-137 100.6 74.1 84.1 Solyc09g005350.2.1 3AGZ gi|323714388|pdb|3AGZ|A Chain A, Crystal Structure Of Human Hsp40 Hdj1 Peptide-Binding Domain Complexed With A C-Terminal Peptide Of Hsp70gi|323714389|pdb|3AGZ|B Chain B, Crystal Structure Of Human Hsp40 Hdj1 Peptide-Binding Domain Complexed With A C-Terminal Peptide Of Hsp70 1.00E-38 55.9 21.8 34.4 Name=IPR018253;Note=Heat shock protein DnaJ%2C conserved site
solcap_snp_sl_17524 I SL2.40ch09 271936 exon W A T + tcA tcT S S sSNP Solyc09g005350.2.1 # CTACAAGGAAGTGCCCGCTCTATAGGAGCGGCCTTTCGTGGAGCATTACC[A/T]GATGCACCTTCGCCAGCAGCATTCCTGAATGAAGTGAAAATATCTTCCCC 0.36 0.22 0 0.48 0.29 AA AA AA AA AA AA AA AA TT AA AA AA AA TT TT AA AA AA TT TA TA TA TA AA AA AA AA AA TT TT AA TA AA AA TT AA AA AA AA AA - - - gi|255574345|ref|XP_002528086.1| Protein SIS1, putative [Ricinus communis]gi|223532475|gb|EEF34265.1| Protein SIS1, putative [Ricinus communis] Protein SIS1, putative 1.00E-158 99.7 80.9 89.7 O KOG0714 Molecular chaperone (DnaJ superfamily) 1.00E-144 95.0 76.2 85.6 K09510_rcu-RCOM_1172180 1.00E-137 100.6 74.1 84.1 Solyc09g005350.2.1 3AGZ gi|323714388|pdb|3AGZ|A Chain A, Crystal Structure Of Human Hsp40 Hdj1 Peptide-Binding Domain Complexed With A C-Terminal Peptide Of Hsp70gi|323714389|pdb|3AGZ|B Chain B, Crystal Structure Of Human Hsp40 Hdj1 Peptide-Binding Domain Complexed With A C-Terminal Peptide Of Hsp70 1.00E-38 55.9 21.8 34.4 Name=IPR018253;Note=Heat shock protein DnaJ%2C conserved site
solcap_snp_sl_17523 I SL2.40ch09 275955 exon M C A + gcC gcA A A sSNP Solyc09g005350.2.1 # ATGGAATTAATTGGTACAGTTAGATTCCGGCCATCAAGGGTTGTTATTTG[T/G]GCAGTGTATCCAGTAAGAGCCTCTACCAAGGGGATTTTCTGGGTGACAAC 0.36 0.22 0 0.48 0.29 TT TT TT TT TT TT TT TT GG TT TT TT TT GG GG TT TT TT GG TG TG TG TG TT TT TT TT TT GG GG TT TG TT TT GG TT TT TT TT TT 1.60E-26 DnaJ_C DnaJ C terminal domain gi|255574345|ref|XP_002528086.1| Protein SIS1, putative [Ricinus communis]gi|223532475|gb|EEF34265.1| Protein SIS1, putative [Ricinus communis] Protein SIS1, putative 1.00E-158 99.7 80.9 89.7 O KOG0714 Molecular chaperone (DnaJ superfamily) 1.00E-144 95.0 76.2 85.6 K09510_rcu-RCOM_1172180 1.00E-137 100.6 74.1 84.1 Solyc09g005350.2.1 3AGZ gi|323714388|pdb|3AGZ|A Chain A, Crystal Structure Of Human Hsp40 Hdj1 Peptide-Binding Domain Complexed With A C-Terminal Peptide Of Hsp70gi|323714389|pdb|3AGZ|B Chain B, Crystal Structure Of Human Hsp40 Hdj1 Peptide-Binding Domain Complexed With A C-Terminal Peptide Of Hsp70 1.00E-38 55.9 21.8 34.4 Name=IPR018253;Note=Heat shock protein DnaJ%2C conserved site
solcap_snp_sl_17522 I SL2.40ch09 276111 exon Y C T + ccC ccT P P sSNP Solyc09g005350.2.1 # CATGTCAAGTACCGCTTTATGCCAGCTTTCTGCTCAGAAGTAAGCTTGCT[A/G]GGGAACTTGATGTTAAACTTTACTCTCAAGTTGCCTTTTCTGCTAGGTTC 0.49 0.22 0 0.18 0.29 AA AA AA AA AA AA AA AA GG AA AA AA AA GG GG AA AA AA GG AG GG GG GG GG GG GG GG GG GG GG GG AG GG GG GG AA GG GG GG GG 1.60E-26 DnaJ_C DnaJ C terminal domain gi|255574345|ref|XP_002528086.1| Protein SIS1, putative [Ricinus communis]gi|223532475|gb|EEF34265.1| Protein SIS1, putative [Ricinus communis] Protein SIS1, putative 1.00E-158 99.7 80.9 89.7 O KOG0714 Molecular chaperone (DnaJ superfamily) 1.00E-144 95.0 76.2 85.6 K09510_rcu-RCOM_1172180 1.00E-137 100.6 74.1 84.1 Solyc09g005350.2.1 3AGZ gi|323714388|pdb|3AGZ|A Chain A, Crystal Structure Of Human Hsp40 Hdj1 Peptide-Binding Domain Complexed With A C-Terminal Peptide Of Hsp70gi|323714389|pdb|3AGZ|B Chain B, Crystal Structure Of Human Hsp40 Hdj1 Peptide-Binding Domain Complexed With A C-Terminal Peptide Of Hsp70 1.00E-38 55.9 21.8 34.4 Name=IPR018253;Note=Heat shock protein DnaJ%2C conserved site
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