| HMMscan | nr | KOG | KEGG | PDB | ITAG2.3 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| SNP ID | Array type ( I: Infinium G: Goldengate) |
Chromosome | Position on the SL2.40 | Location | IUPAC | SNP genotype (Heinz 1706-BG) | SNP genotype (Mutation) | Strand | Codon (Heinz 1706-BG) | Codon (Mutation) | Amino acid residue (Heinz 1706-BG) | Amino acid residue (Mutation) | SNP category | ITAG gene model | Functional site | Flanking sequences on SNP | HZ (The 40 lines) | HZ (cluster 1) | HZ (cluster 2) | HZ (cluster 3) | HZ (cluster 4) | San Marzano | Rutgers | Ponderosa | Aichi First | S. lycopersicum var cerasiforme (WIR25/30) | S. lycopersicum var cerasiforme (TOMJPF00009) | Earliana | Best Of All | Money Maker | Ailsa Craig | LA925 | Fruit | Rio Grande | Marglobe | Heinz 1706-BG | Tomato Chuukanbohon Nou 9 | Furikoma | Tomato Chuukanbohon Nou 11 | Reika | Momotaro 8 | Labell | Matrix | Geronimo | Micro-Tom_AM | Micro-Tom TGRC (LA3911) | Micro-Tom_MM | Micro-Tom | Micro-Tom NBRP (TOMJPF00001) | M82_MM | M82 | Regina | Sweet100 | S. pimpinellifolium (TOMJPF00012) | S. pimpinellifolium (LS1513) | S. pimpinellifolium (PI344102) | S. chilense (LA1958) | S. peruvianum (WIR2020) | S. peruvianum (TOMJPF00010) | S. pennellii (TOMJPF00008) | S. pennellii (LA716) | E-value | Model | HMMscan definition | nr definition | Product (KDRI) | E-value | Length% | Identity% | Positive% | KOG id | KOG No. | KOG definition | E-value | Length% | Identity% | Positive% | KO | E-value | Length% | Identity% | Positive% | Gene name [structural model (tomato)] (Structures with links can be browsed by Jmol.) |
PDB id | PDB definition | E-value | Length% | Identity% | Positive% | ITAG (interpro) |
| solcap_snp_sl_45992 | I | SL2.40ch10 | 49125 | 3utr | Y | T | C | + | # | # | # | # | uSNP | Solyc10g005040.2.1 | # | GGTCAAGTTCCTTTGCTTGGTTCTTCAGATTGTCAACTTCATTGATGAAC[T/C]TTTGTTAAAAGTCTACTATGAACTTGGAGATTTGTTTCTTCTTATATCAA | 0.33 | 0.22 | 0 | 0 | 0 | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | CC | TC | TT | CC | CC | CC | CC | CC | CC | CC | - | - | - | gi|87240855|gb|ABD32713.1| Harpin-induced 1 [Medicago truncatula] | Harpin-induced 1 | 1.00E-58 | 103.6 | 47.1 | 63.3 | - | noCOG | 2.00E-50 | 102.7 | 44.8 | 60.6 | - | - | - | - | - | Solyc10g005040.2.1 | - | - | - | - | - | - | Name=IPR010847;Note=Harpin-induced 1 | |
| solcap_snp_sl_46021 | I | SL2.40ch10 | 162566 | exon | Y | C | T | - | Gtg | Atg | V | M | cSNP | Solyc10g005200.2.1 | # | GAGCTCGAATCTCTTCACAGTTCCAGCAATGTCTCTCATGGTTGAGTCCA[T/C]TTCATAGGGGATTTGGTCAACGGTGATCGTCGTGGCGTTGACTAGCTGTC | 0.16 | 0.38 | 0 | 0 | 0 | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | TT | TC | CC | TT | TT | CC | CC | CC | CC | CC | - | - | - | - | - | - | - | - | - | S | KOG4735 | Extracellular protein with conserved cysteines | 1.00E-169 | 108.1 | 61.0 | 75.4 | - | - | - | - | - | Solyc10g005200.2.1 | - | - | - | - | - | - | Name=IPR008166;Note=Protein of unknown function DUF23 |
| CL016286-0485 | I | SL2.40ch10 | 215535 | exon | R | A | G | - | aaT | aaC | N | N | sSNP | Solyc10g005290.2.1 | # | TANTATTCCAGTTCATAATTACATTGAAACATGTACAGGTAAATACAGTTCTGCAATTGGCCCTTGTTGCTGCAGCTCTCCTTCAACCGGATCTGGGTAA[T/C]GCCGAAACTCAAACATATATCACTTACCTC | 0.26 | 0.47 | 0 | 0 | 0 | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TC | TC | TT | TC | TC | CC | CC | CC | TC | TC | - | - | - | gi|255554939|ref|XP_002518507.1| cdp-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase, putative [Ricinus communis]gi|223542352|gb|EEF43894.1| cdp-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase, putative [Ricinus communis] | cdp-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase, putative | 3.00E-86 | 93.6 | 51.3 | 65.3 | I | KOG1617 | CDP-alcohol phosphatidyltransferase/Phosphatidylglycerol-phosphate synthase | 1.00E-62 | 80.1 | 43.7 | 55.7 | K08744_vvi-100241827 | 4.00E-94 | 97.5 | 57.7 | 67.5 | Solyc10g005290.2.1 | - | - | - | - | - | - | Name=IPR000462;Note=CDP-alcohol phosphatidyltransferase |
| solcap_snp_sl_46038 | I | SL2.40ch10 | 353723 | exon | Y | T | C | - | cAg | cGg | Q | R | cSNP | Solyc10g005480.2.1 | # | CTTCACTATCTGATGTAAACAAGGCTACAGATATGTCAGCTAGTTTCTTC[T/C]GACTTAAACGAGTCCTCGGAAACTTTGCTTGCCTAGGAGCATTAGGCAAT | 0.27 | 0.47 | 0 | 0 | 0 | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | CC | TC | TT | CC | CC | CC | CC | CC | TT | TT | - | - | - | gi|224078856|ref|XP_002305655.1| f-box family protein [Populus trichocarpa]gi|222848619|gb|EEE86166.1| f-box family protein [Populus trichocarpa] | f-box family protein | 3.00E-36 | 106.8 | 45.8 | 66.7 | - | noCOG | 1.00E-25 | 108.5 | 38.4 | 57.1 | - | - | - | - | - | Solyc10g005480.2.1 | - | No_hits | - | - | - | - | Name=IPR001810;Note=Cyclin-like F-box | |
| solcap_snp_sl_46040 | I | SL2.40ch10 | 417909 | 3utr | Y | T | C | - | # | # | # | # | uSNP | Solyc10g005510.2.1 | # | CGGCAAATTAACAAATTGTGTGCTCTCCTTTTAAGCAAGAAAATTGCCAC[T/C]TCTCCATAGTAGCAAGAGTATAAAATTACATCCTTGTGAAAAGACAGCAT | 0.36 | 0 | 0 | 0 | 0 | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | CC | TC | CC | CC | CC | CC | CC | CC | CC | CC | - | - | - | gi|18072805|emb|CAC80377.1| glyceraldehyde-3-phosphate dehydrogenase [Capsicum annuum]gi|26986729|emb|CAC88118.1| glyceraldehyde-3-phosphate dehydrogenase [Capsicum annuum] | glyceraldehyde-3-phosphate dehydrogenase | 0 | 100.0 | 94.0 | 96.9 | G | KOG0657 | Glyceraldehyde 3-phosphate dehydrogenase | 0 | 100.2 | 80.9 | 87.6 | K00134_vvi-100265689 | 0 | 102.4 | 81.9 | 90.7 | Solyc10g005510.2.1 | 1IHX | gi|22218774|pdb|1IHX|A Chain A, Crystal Structure Of Two D-Glyceraldehyde-3-Phosphate Dehydrogenase Complexes: A Case Of Asymmetrygi|22218775|pdb|1IHX|B Chain B, Crystal Structure Of Two D-Glyceraldehyde-3-Phosphate Dehydrogenase Complexes: A Case Of Asymmetrygi|22218776|pdb|1IHX|C Chain C, Crystal Structure Of Two D-Glyceraldehyde-3-Phosphate Dehydrogenase Complexes: A Case Of Asymmetrygi|22218777|pdb|1IHX|D Chain D, Crystal Structure Of Two D-Glyceraldehyde-3-Phosphate Dehydrogenase Complexes: A Case Of Asymmetrygi|22218778|pdb|1IHY|A Chain A, Gapdh Complexed With Adp-Ribosegi|22218779|pdb|1IHY|B Chain B, Gapdh Complexed With Adp-Ribosegi|22218780|pdb|1IHY|C Chain C, Gapdh Complexed With Adp-Ribosegi|22218781|pdb|1IHY|D Chain D, Gapdh Complexed With Adp-Ribose | 1.00E-144 | 79.5 | 58.7 | 67.8 | Name=IPR016040;Note=NAD(P)-binding domain |
| solcap_snp_sl_46041 | I | SL2.40ch10 | 418024 | 3utr | Y | C | T | - | # | # | # | # | uSNP | Solyc10g005510.2.1 | # | ATGTCCAACTGTTTAATTATTGTAAACTAAAGTACGATAGTAATGAAACT[T/C]AATCCATAACCAAAATGGAGCATTCTACTCCACAACTTTTTCAAATACAA | 0.16 | 0.38 | 0 | 0 | 0 | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | TT | TC | CC | TT | TT | CC | CC | CC | CC | CC | - | - | - | gi|18072805|emb|CAC80377.1| glyceraldehyde-3-phosphate dehydrogenase [Capsicum annuum]gi|26986729|emb|CAC88118.1| glyceraldehyde-3-phosphate dehydrogenase [Capsicum annuum] | glyceraldehyde-3-phosphate dehydrogenase | 0 | 100.0 | 94.0 | 96.9 | G | KOG0657 | Glyceraldehyde 3-phosphate dehydrogenase | 0 | 100.2 | 80.9 | 87.6 | K00134_vvi-100265689 | 0 | 102.4 | 81.9 | 90.7 | Solyc10g005510.2.1 | 1IHX | gi|22218774|pdb|1IHX|A Chain A, Crystal Structure Of Two D-Glyceraldehyde-3-Phosphate Dehydrogenase Complexes: A Case Of Asymmetrygi|22218775|pdb|1IHX|B Chain B, Crystal Structure Of Two D-Glyceraldehyde-3-Phosphate Dehydrogenase Complexes: A Case Of Asymmetrygi|22218776|pdb|1IHX|C Chain C, Crystal Structure Of Two D-Glyceraldehyde-3-Phosphate Dehydrogenase Complexes: A Case Of Asymmetrygi|22218777|pdb|1IHX|D Chain D, Crystal Structure Of Two D-Glyceraldehyde-3-Phosphate Dehydrogenase Complexes: A Case Of Asymmetrygi|22218778|pdb|1IHY|A Chain A, Gapdh Complexed With Adp-Ribosegi|22218779|pdb|1IHY|B Chain B, Gapdh Complexed With Adp-Ribosegi|22218780|pdb|1IHY|C Chain C, Gapdh Complexed With Adp-Ribosegi|22218781|pdb|1IHY|D Chain D, Gapdh Complexed With Adp-Ribose | 1.00E-144 | 79.5 | 58.7 | 67.8 | Name=IPR016040;Note=NAD(P)-binding domain |
| SL10082_607 | I | SL2.40ch10 | 434720 | intron | K | G | T | - | # | # | # | # | iSNP | Solyc10g005530.2.1 | # | CCCACCCAGCACCGCCACCTACTCCATATCAGCTCCACACTCTTCTCCAT[T/G]CCTTTCTCCCGAGCCTCTACCACCACCAAAACCTCGATCACATGCTCCAA | 0.16 | 0.38 | 0 | 0 | 0 | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | TT | TG | GG | TT | TT | GG | GG | GG | GG | GG | - | - | - | gi|224460069|gb|ACN43585.1| nuclear cap-binding protein [Solanum tuberosum]gi|224460071|gb|ACN43586.1| nuclear cap-binding protein [Solanum tuberosum] | nuclear cap-binding protein | 0 | 100.0 | 98.4 | 99.1 | A | KOG1104 | Nuclear cap-binding complex, subunit NCBP1/CBP80 | 0 | 87.0 | 60.9 | 74.4 | K12882_vvi-100265341 | 0 | 99.3 | 77.2 | 87.6 | Solyc10g005530.2.1 | 1N52 | gi|28948729|pdb|1N52|A Chain A, Cap Binding Complexgi|28948731|pdb|1N54|A Chain A, Cap Binding Complex M7gpppg Freegi|255917903|pdb|3FEX|A Chain A, Crystal Structure Of The Cbc-Importin Alpha Complex.gi|255917906|pdb|3FEY|A Chain A, Crystal Structure Of The Cbc-Importin Alpha Complex | 4.00E-82 | 91.8 | 25.0 | 43.0 | Name=IPR016021;Note=MIF4-like%2C type 1/2/3 |
| CL015614-0412 | I | SL2.40ch10 | 468921 | intron | S | G | C | - | # | # | # | # | iSNP | Solyc10g005580.2.1 | # | GAGTCGCCTATCCTATGAGCAGTTCAGTGCCTTTCTGACCAACATTAAGGAATTAAATGCACAAAAGCAGTCTCGTGAGGTGATGAGCATTTTTAGTTGC[C/G]TTAACATTCTATGAATTCCTCCTATTTGTCTACTAGTAACTGAANGTCTTCTCCTATTCCTTTTCGCCATTATAAATTTAGGAAACTTTGAAAAAATCAG | 0.47 | 0.12 | 0 | 0 | 0.46 | CC | CC | GG | GG | GG | GG | GG | CC | CC | CC | CC | CC | CC | CC | CC | CC | GG | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | GG | GC | GG | GG | GG | GG | GC | GG | GG | GG | - | - | - | - | - | - | - | - | - | - | noCOG | 1.00E-103 | 94.2 | 59.5 | 73.8 | - | - | - | - | - | Solyc10g005580.2.1 | - | - | - | - | - | - | # | |
| solcap_snp_sl_46056 | I | SL2.40ch10 | 474132 | 3utr | Y | C | T | - | # | # | # | # | uSNP | Solyc10g005590.2.1 | # | TTTTCTGATGTTTCTCTTCCCACTTTTTCAATTAATATGTTTACTGTCGT[T/C]GGAAGATATCTGAGGCACAGCAATGCAACTAAACCAAAATAATGTGAATT | 0.36 | 0 | 0 | 0 | 0 | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | TT | TC | TT | TT | TT | TT | TT | TT | TT | TT | - | - | - | gi|81074820|gb|ABB55376.1| putative arginine/serine-rich protein-like [Solanum tuberosum] | putative arginine/serine-rich protein-like | 1.00E-124 | 94.2 | 72.4 | 72.6 | R | KOG0118 | FOG: RRM domain | 3.00E-53 | 99.5 | 31.0 | 37.0 | K14325_rcu-RCOM_1576190 | 3.00E-76 | 101.7 | 40.6 | 46.6 | Solyc10g005590.2.1 | - | - | - | - | - | - | Name=IPR012677;Note=Nucleotide-binding%2C alpha-beta plait |
| solcap_snp_sl_46059 | I | SL2.40ch10 | 482363 | exon | K | T | G | - | agA | agC | R | S | cSNP | Solyc10g005600.2.1 | # | GAGGCAGCACGGATAATTTCAATGAGATGCTCATCCAATGCATCAAACTC[T/G]CTTGAGTTACGTAGATGATGATACATAGGGGCTAGATACTCAGCTGCAAC | 0.47 | 0 | 0 | 0 | 0.46 | TT | TT | GG | GG | GG | GG | GG | TT | TT | TT | TT | TT | TT | TT | TT | TT | GG | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | GG | TG | GG | GG | GG | GG | GG | GG | GG | GG | - | - | - | - | - | - | - | - | - | - | noCOG | 2.00E-85 | 89.5 | 17.5 | 26.1 | - | - | - | - | - | Solyc10g005600.2.1 | - | - | - | - | - | - | Name=IPR000210;Note=BTB/POZ-like | |
| 4027_959 | G | SL2.40ch10 | 540707 | exon | K | G | T | + | agG | agT | R | S | cSNP | Solyc10g005660.2.1 | # | CTCTAGTACAATGAACGAGTTGGTTGACAAATTCAATACTGCATATGAACGGCATAGTAG[T/G]AGGGGCGGGAGAACTTCTTTCATCTGAAAGTTGATTATATCTCCAGTATTGCCTTTTTGT | 0.14 | - | 0 | 0 | 0 | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | TT | TT | GG | GG | GG | -- | - | - | - | gi|255576641|ref|XP_002529210.1| signalosome subunit, putative [Ricinus communis]gi|223531328|gb|EEF33166.1| signalosome subunit, putative [Ricinus communis] | signalosome subunit, putative | 1.00E-160 | 101.6 | 87.5 | 93.6 | OT | KOG3050 | COP9 signalosome, subunit CSN6 | 1.00E-129 | 91.4 | 71.2 | 81.8 | K12179_vvi-100246357 | 1.00E-162 | 101.3 | 89.8 | 96.2 | Solyc10g005660.2.1 | - | - | - | - | - | - | # | |||||||||||||
| solcap_snp_sl_46104 | I | SL2.40ch10 | 649091 | genome | R | G | A | # | # | # | # | # | gSNP | # | # | GTTATAATGAATATTGTAAAGTAGGAACTCCTATTGATCTTTGTCAGTCA[A/G]TTAGCCTGTTCCAGGACATTTCTGATTCACAGCATTCCCATAATAGACCT | 0.14 | 0.47 | 0 | 0 | 0 | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | AA | AA | AA | GG | GG | GG | GG | GG | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | # |
| 13569_315 | G | SL2.40ch10 | 662048 | 3utr | S | G | C | - | # | # | # | # | uSNP | Solyc10g005860.2.1 | # | TACTTTGTAGAAGACATCTTGTTTGTACCACAAAAGTTTATGTTTTCAGAATGTAGCCTG[C/G]TGTGGTATTGGGAACTTTCAATTGGTCATCAGTTACCGTCAGCCCCTGCCACAGTCAATT | 0.14 | 0 | 0 | 0 | 0 | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | GG | GG | CC | CC | CC | CC | - | - | - | gi|238479758|ref|NP_001154613.1| WW domain-containing protein [Arabidopsis thaliana]gi|332641797|gb|AEE75318.1| WW domain-containing protein [Arabidopsis thaliana] | WW domain-containing protein | 8.00E-13 | 1205.4 | 55.4 | 60.8 | - | noCOG | 2.00E-06 | 1166.2 | 28.4 | 32.4 | - | - | - | - | - | Solyc10g005860.2.1 | - | No_hits | - | - | - | - | # | ||||||||||||||
| solcap_snp_sl_46154 | I | SL2.40ch10 | 794787 | exon | Y | T | C | + | Tgt | Cgt | C | R | cSNP | Solyc10g006050.2.1 | # | TGGTTGAAGTAAAGCGTGCTGTACCGAAGGAGCTATCTCCAGCGCCTAAC[T/C]GTAGCCCTCTCATGGGATACAACTATGGACACAATAGAGCCAACAACTTC | 0.33 | 0 | 0 | 0.18 | 0 | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TC | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | CC | CC | CC | CC | CC | CC | CC | CC | - | - | - | gi|255576302|ref|XP_002529044.1| Heterogeneous nuclear ribonucleoprotein 27C, putative [Ricinus communis]gi|223531524|gb|EEF33355.1| Heterogeneous nuclear ribonucleoprotein 27C, putative [Ricinus communis] | Heterogeneous nuclear ribonucleoprotein 27C, putative | 1.00E-153 | 110.4 | 68.1 | 79.7 | A | KOG4205 | RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 | 1.00E-113 | 113.6 | 57.3 | 70.4 | K14411_pop-POPTR_550162 | 1.00E-158 | 110.4 | 67.2 | 79.0 | Solyc10g006050.2.1 | 2CJK | gi|159163803|pdb|2CJK|A Chain A, Structure Of The Rna Binding Domain Of Hrp1 In Complex With Rnagi|301598362|pdb|2KM8|C Chain C, Interdomain Rrm Packing Contributes To Rna Recognition In The Rna15, Hrp1, Anchor Rna 3' Processing Ternary Complex | 1.00E-28 | 38.6 | 14.1 | 20.8 | Name=IPR012677;Note=Nucleotide-binding%2C alpha-beta plait |
| solcap_snp_sl_13195 | I | SL2.40ch10 | 910785 | 3utr | Y | T | C | - | # | # | # | # | uSNP | Solyc10g006220.2.1 | # | ATTCAAAAGTGCTCTAACAAAAGACTAGGAAGTTTAATTTAAGTTCTATC[T/C]GTATGAAATTCAGTTCACAGTATATGATCAAATCCTCCAGCCTGTAGAGG | 0.45 | 0 | 0 | 0.42 | 0.5 | CC | TT | CC | CC | TT | CC | CC | CC | TT | TT | TT | CC | TT | TT | TT | CC | CC | CC | CC | TC | TC | CC | TC | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | - | - | - | gi|255577151|ref|XP_002529459.1| Cell differentiation protein rcd1, putative [Ricinus communis]gi|223531075|gb|EEF32925.1| Cell differentiation protein rcd1, putative [Ricinus communis] | Cell differentiation protein rcd1, putative | 1.00E-148 | 100.3 | 81.3 | 85.9 | R | KOG3036 | Protein involved in cell differentiation/sexual development | 1.00E-145 | 96.6 | 78.3 | 84.1 | K12606_rcu-RCOM_0752590 | 1.00E-149 | 100.3 | 81.3 | 85.9 | Solyc10g006220.2.1 | 2FV2 | gi|126030479|pdb|2FV2|A Chain A, Crystal Structure Analysis Of Human Rcd-1 Conserved Regiongi|126030480|pdb|2FV2|B Chain B, Crystal Structure Analysis Of Human Rcd-1 Conserved Regiongi|126030481|pdb|2FV2|C Chain C, Crystal Structure Analysis Of Human Rcd-1 Conserved Regiongi|126030482|pdb|2FV2|D Chain D, Crystal Structure Analysis Of Human Rcd-1 Conserved Region | 1.00E-106 | 82.0 | 56.6 | 66.4 | Name=IPR007216;Note=Cell differentiation%2C Rcd1-like |
| solcap_snp_sl_46208 | I | SL2.40ch10 | 934508 | exon | R | A | G | + | Agt | Ggt | S | G | cSNP | Solyc10g006260.2.1 | # | ATAAGCGATCCAGAAAAAAGAGGCGATCACGCCGTCACAGACACAAAGAT[A/G]GTGAAAATGCAGGCGAGGATGAAGATGATGAAGATAATAGGCGATCAAGA | 0.33 | 0 | 0 | 0.18 | 0 | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AG | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | GG | GG | GG | GG | GG | GG | GG | GG | - | - | - | gi|255577121|ref|XP_002529444.1| RNA binding protein, putative [Ricinus communis]gi|223531060|gb|EEF32910.1| RNA binding protein, putative [Ricinus communis] | RNA binding protein, putative | 1.00E-102 | 116.0 | 45.6 | 60.8 | A | KOG1847 | mRNA splicing factor | 9.00E-73 | 110.9 | 37.3 | 50.7 | - | - | - | - | - | Solyc10g006260.2.1 | - | - | - | - | - | - | # |
| solcap_snp_sl_13200 | I | SL2.40ch10 | 1058432 | exon | S | G | C | - | ccC | ccG | P | P | sSNP | Solyc10g006450.2.1 | # | TTCTTAGGAGCAGGGCATTTGTATCCATCATTGATGAGATTAATTGACTT[C/G]GGCATTGGAGTTGCTTTCGCCGGAACACCAAATTGCGTTCCTTTTATCTT | 0.42 | 0 | 0 | 0.32 | 0.48 | CC | GG | CC | CC | CC | CC | CC | CC | GG | GG | GG | CC | GG | GG | GG | CC | CC | CC | CC | CC | CG | CC | CG | CC | CC | CC | CC | CC | GG | GG | GG | GG | CC | CC | CC | CC | CC | CC | CC | CC | 1.60E-62 | COBRA | COBRA-like protein | - | - | - | - | - | - | - | noCOG | 0 | 94.3 | 55.3 | 69.6 | - | - | - | - | - | Solyc10g006450.2.1 | - | - | - | - | - | - | Name=IPR006918;Note=Glycosyl-phosphatidyl inositol-anchored%2C plant | |
| solcap_snp_sl_46250 | I | SL2.40ch10 | 1067505 | 3utr | Y | T | C | + | # | # | # | # | uSNP | Solyc10g006460.2.1 | # | TTTTTATAAATCACTAGTTAACTTTATTATAATTTTACTTGGGATAGCAT[T/C]TTCTGCATTGACACGACAAATATAAGAACTGCACGATGATTGATGAAGGA | 0.14 | 0.49 | 0 | 0 | 0 | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | CC | CC | -- | CC | TT | TT | TT | - | - | - | gi|343173127|gb|AEL99266.1| DDRGK domain-containing protein, partial [Silene latifolia] | DDRGK domain-containing protein, partial | 8.00E-94 | 97.7 | 69.0 | 81.3 | S | KOG3054 | Uncharacterized conserved protein | 2.00E-67 | 102.0 | 64.0 | 77.7 | - | - | - | - | - | Solyc10g006460.2.1 | 1WI9 | gi|159163377|pdb|1WI9|A Chain A, Solution Structure Of The Pci Domain From Mouse Hypothetical Protein Aah51541 | 7.00E-15 | 24.0 | 12.3 | 15.0 | # |
| SL10533_249 | I | SL2.40ch10 | 1076082 | intron | M | A | C | + | # | # | # | # | iSNP | Solyc10g006490.2.1 | # | AGCCTTATAGAACTTCGAATTGAACTCCGTCTATGTGATCGGAAGCATAG[A/C]TAAAAAGGAAAGAAATCACCTAGTGTTTTTGTCTCTCAGTTGTGTTGACT | 0.1 | 0.38 | 0 | 0 | 0 | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | CC | CC | AA | AA | AA | AA | AA | - | - | - | gi|255563689|ref|XP_002522846.1| Trafficking protein particle complex subunit, putative [Ricinus communis]gi|223537930|gb|EEF39544.1| Trafficking protein particle complex subunit, putative [Ricinus communis] | Trafficking protein particle complex subunit, putative | 8.00E-97 | 100.0 | 90.9 | 97.3 | U | KOG3330 | Transport protein particle (TRAPP) complex subunit | 1.00E-95 | 100.0 | 87.6 | 96.2 | - | - | - | - | - | Solyc10g006490.2.1 | 1WC8 | gi|58177160|pdb|1WC8|A Chain A, The Crystal Structure Of Mouse Bet3p | 1.00E-53 | 96.8 | 50.0 | 68.8 | Name=IPR016721;Note=TRAPP I complex%2C Bet3 |
| solcap_snp_sl_13202 | I | SL2.40ch10 | 1163895 | 3utr | Y | T | C | - | # | # | # | # | uSNP | Solyc10g006660.2.1 | # | GCTCGAGTCCTCAAATGAGGAATCAGCTGATTCGAGGGGTCTCCCTTCAA[T/C]CCACGTTCTAACAGACTTGTTCTTCAGTTGGTAGGTGTAGTACACTTCTT | 0.44 | 0 | 0 | 0.48 | 0.48 | CC | TT | CC | CC | CC | CC | CC | CC | TT | TT | TT | CC | TT | TT | TT | CC | CC | CC | CC | CC | TT | CC | TT | CC | CC | CC | CC | CC | TT | TT | TT | TT | CC | CC | CC | CC | CC | CC | CC | CC | - | - | - | gi|56542451|gb|AAV92890.1| Avr9/Cf-9 rapidly elicited protein 20 [Nicotiana tabacum] | Avr9/Cf-9 rapidly elicited protein 20 | 3.00E-50 | 88.4 | 79.8 | 83.7 | ZD | KOG0028 | Ca2+-binding protein (centrin/caltractin), EF-Hand superfamily protein | 2.00E-39 | 100.8 | 58.9 | 75.2 | K10840_ecb-100063613 | 3.00E-11 | 133.3 | 27.1 | 45.7 | Solyc10g006660.2.1 | 3H4S | gi|237824052|pdb|3H4S|E Chain E, Structure Of The Complex Of A Mitotic Kinesin With Its Calcium Binding Regulator | 9.00E-32 | 104.7 | 46.5 | 64.3 | Name=IPR011992;Note=EF-Hand type |
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