| HMMscan | nr | KOG | KEGG | PDB | ITAG2.3 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| SNP ID | Array type ( I: Infinium G: Goldengate) |
Chromosome | Position on the SL2.40 | Location | IUPAC | SNP genotype (Heinz 1706-BG) | SNP genotype (Mutation) | Strand | Codon (Heinz 1706-BG) | Codon (Mutation) | Amino acid residue (Heinz 1706-BG) | Amino acid residue (Mutation) | SNP category | ITAG gene model | Functional site | Flanking sequences on SNP | HZ (The 40 lines) | HZ (cluster 1) | HZ (cluster 2) | HZ (cluster 3) | HZ (cluster 4) | San Marzano | Rutgers | Ponderosa | Aichi First | S. lycopersicum var cerasiforme (WIR25/30) | S. lycopersicum var cerasiforme (TOMJPF00009) | Earliana | Best Of All | Money Maker | Ailsa Craig | LA925 | Fruit | Rio Grande | Marglobe | Heinz 1706-BG | Tomato Chuukanbohon Nou 9 | Furikoma | Tomato Chuukanbohon Nou 11 | Reika | Momotaro 8 | Labell | Matrix | Geronimo | Micro-Tom_AM | Micro-Tom TGRC (LA3911) | Micro-Tom_MM | Micro-Tom | Micro-Tom NBRP (TOMJPF00001) | M82_MM | M82 | Regina | Sweet100 | S. pimpinellifolium (TOMJPF00012) | S. pimpinellifolium (LS1513) | S. pimpinellifolium (PI344102) | S. chilense (LA1958) | S. peruvianum (WIR2020) | S. peruvianum (TOMJPF00010) | S. pennellii (TOMJPF00008) | S. pennellii (LA716) | E-value | Model | HMMscan definition | nr definition | Product (KDRI) | E-value | Length% | Identity% | Positive% | KOG id | KOG No. | KOG definition | E-value | Length% | Identity% | Positive% | KO | E-value | Length% | Identity% | Positive% | Gene name [structural model (tomato)] (Structures with links can be browsed by Jmol.) |
PDB id | PDB definition | E-value | Length% | Identity% | Positive% | ITAG (interpro) |
| solcap_snp_sl_66678 | I | SL2.40ch11 | 138678 | 5utr | R | G | A | + | # | # | # | # | rSNP | Solyc11g005150.1.1 | # | AAAACATTGCTGTTTTCCAATACTGCAACGCGATATAAGCATCGCGAATC[T/C]TTGAGTTTTCAAAACTCAACTTACTAGCATTAGCCTTAATGTCATCTAAT | 0.42 | 0.22 | 0 | 0 | 0 | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | TT | TT | TT | TT | TT | CC | CC | CC | CC | CC | TT | TT | TT | TT | TT | TT | TT | - | - | - | gi|127058169|dbj|BAF48665.1| leucine-rich repeat/extensin 1 [Nicotiana tabacum] | leucine-rich repeat/extensin 1 | 1.00E-173 | 116.8 | 46.8 | 48.9 | - | noCOG | 1.00E-129 | 120.2 | 36.3 | 43.0 | - | - | - | - | - | Solyc11g005150.1.1 | 3RGX | gi|340708084|pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1gi|340708085|pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 | 4.00E-15 | 124.1 | 12.9 | 18.7 | Name=PF04554;length=64;Note=Extensin_2;Dbxref=PFAM:PF04554;database=PFAM | |
| 11289_715 | G | SL2.40ch11 | 163713 | exon | Y | T | C | + | caT | caC | H | H | sSNP | Solyc11g005190.1.1 | # | GAGGGTCTACGCGTATGATATGAGGAAAATGCTTGACCCACTCTTTGTCCTGGATGGACA[T/C]GAGAAAGCAGTTACTTACATTAGATTTNTTGATGAACGTACTATTATTTCTTCGAGCATA | 0.14 | 0 | 0 | 0 | 0 | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | CC | CC | TT | TT | TT | TT | 8.70E-27 | WD40 | WD domain, G-beta repeat | gi|255575819|ref|XP_002528808.1| ubiquitin ligase protein cop1, putative [Ricinus communis]gi|223531761|gb|EEF33581.1| ubiquitin ligase protein cop1, putative [Ricinus communis] | ubiquitin ligase protein cop1, putative | 1.00E-124 | 118.3 | 61.4 | 76.4 | - | noCOG | 1.00E-110 | 102.2 | 52.2 | 68.1 | - | - | - | - | - | Solyc11g005190.1.1 | 3N0D | gi|309319960|pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) | 4.00E-13 | 87.5 | 19.7 | 31.9 | Name=PF00400;length=32;Note=WD40;Dbxref=PFAM:PF00400;database=PFAM | ||||||||||||||
| 1720_266 | G | SL2.40ch11 | 291811 | exon | Y | C | T | - | gcG | gcA | A | A | sSNP | Solyc11g005360.1.1 | # | AGAACAATTTGAAGGCAAAAGATTGCTTGAGAGGCACAGAATGGTTAACGGTGCACTGGC[A/G]GAGGAGATGAAGGAAATCCACGCTCTCTCTATTACAAAAGCGCTCACTCCAGAGCAGTGG | 0.14 | 0 | 0 | 0 | 0 | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | AA | AA | GG | GG | GG | GG | 3.90E-25 | BolA | BolA-like protein | gi|255562387|ref|XP_002522200.1| transcription regulator, putative [Ricinus communis]gi|223538571|gb|EEF40175.1| transcription regulator, putative [Ricinus communis] | transcription regulator, putative | 9.00E-35 | 101.1 | 77.2 | 85.9 | T | KOG3348 | BolA (bacterial stress-induced morphogen)-related protein | 5.00E-30 | 101.1 | 64.1 | 73.9 | K05527_osa-4325073 | 4.00E-19 | 102.2 | 58.7 | 71.7 | Solyc11g005360.1.1 | 3O2E | gi|308387908|pdb|3O2E|A Chain A, Crystal Structure Of A Bol-Like Protein From Babesia Bovis | 3.00E-19 | 114.1 | 46.7 | 60.9 | Name=PTHR12735:SF2;length=80;Note=BOLA-LIKE PROTEIN MY016;Dbxref=PANTHER:PTHR12735:SF2;database=PANTHER | |||||||||||||
| solcap_snp_sl_66642 | I | SL2.40ch11 | 305772 | exon | Y | T | C | + | taT | taC | Y | Y | sSNP | Solyc11g005380.1.1 | # | GGCAATTGTTTCTTGGACTTGTTTTGATAGATGGAATCCAATTGATGAAA[A/G]TATGGACATGTTTTTGAATCTTCTGGCCTTTTCTTTTGGCTTTCTTTAAC | 0.1 | 0.38 | 0 | 0 | 0 | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | GG | GG | AA | AA | AA | AA | AA | 2.50E-07 | MADF_DNA_bdg | Alcohol dehydrogenase transcription factor Myb/SANT-like | gi|351726898|ref|NP_001236630.1| trihelix transcription factor [Glycine max]gi|146674827|gb|ABQ42349.1| trihelix transcription factor [Glycine max] | trihelix transcription factor | 1.00E-108 | 101.0 | 44.4 | 59.6 | K | KOG4282 | Transcription factor GT-2 and related proteins, contains trihelix DNA-binding/SANT domain | 1.00E-108 | 121.8 | 44.4 | 59.4 | - | - | - | - | - | Solyc11g005380.1.1 | - | - | - | - | - | - | Name=PS50090;length=60;Note=MYB_LIKE;Dbxref=PROFILE:PS50090;database=PROFILE |
| solcap_snp_sl_21831 | I | SL2.40ch11 | 361623 | 5utr | K | T | G | - | # | # | # | # | rSNP | Solyc11g005450.1.1 | # | GTGCTGTTCTCTGTCTGGTTTGTGAAGACGACTCGTAAAAATCATCTAAA[A/C]GAATTCCCATAATCAGATCTAAAAAAAATGCTTCCTATTACGGCGTCGTT | 0.1 | 0 | 0 | 0 | 0.21 | AA | CC | AA | AA | CC | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | - | - | - | - | - | - | - | - | - | - | noCOG | 2.00E-82 | 103.4 | 51.0 | 65.9 | - | - | - | - | - | Solyc11g005450.1.1 | - | - | - | - | - | - | Name=coil;length=29;Note=coiled-coil;Dbxref=COIL:coil;database=COIL | |
| solcap_snp_sl_21830 | I | SL2.40ch11 | 361629 | 5utr | R | A | G | - | # | # | # | # | rSNP | Solyc11g005450.1.1 | # | AGTTATGTGCTGTTCTCTGTCTGGTTTGTGAAGACGACTCGTAAAAATCA[T/C]CTAAAAGAATTCCCATAATCAGATCTAAAAAAAATGCTTCCTATTACGGC | 0.1 | 0 | 0 | 0 | 0.21 | TT | CC | TT | TT | CC | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | - | - | - | - | - | - | - | - | - | - | noCOG | 2.00E-82 | 103.4 | 51.0 | 65.9 | - | - | - | - | - | Solyc11g005450.1.1 | - | - | - | - | - | - | Name=coil;length=29;Note=coiled-coil;Dbxref=COIL:coil;database=COIL | |
| solcap_snp_sl_15641 | I | SL2.40ch11 | 436089 | 3utr | S | C | G | + | # | # | # | # | uSNP | Solyc11g005580.1.1 | # | TAATCTGAACTACTCAAAATCAAACATATCTAAGAGCTTGGAATGACAGT[C/G]AAGTTCCTTCCTTGCATCGGGTAGAAACTTTCCTCGATCATAAATTTCGA | 0.46 | 0.38 | 0 | 0.32 | 0.42 | GG | CC | GG | GG | CC | CC | CC | GG | GG | GG | GG | GG | GG | GG | GG | GG | CC | GG | GC | GG | GG | GC | GG | GG | GG | GG | GG | GG | CC | CC | GG | GC | CC | CC | CC | CC | CC | CC | GG | GG | - | - | - | gi|225429894|ref|XP_002283626.1| PREDICTED: similar to Os02g0137600 [Vitis vinifera] | PREDICTED: similar to Os02g0137600 | 1.00E-140 | 101.4 | 62.1 | 77.4 | R | KOG2782 | Putative SAM dependent methyltransferases | 1.00E-114 | 99.1 | 51.4 | 66.4 | K03438_ppp-PHYPADRAFT_43703 | 6.00E-88 | 75.1 | 39.7 | 51.4 | Solyc11g005580.1.1 | 1WG8 | gi|56966831|pdb|1WG8|A Chain A, Crystal Structure Of A Predicted S-Adenosylmethionine- Dependent Methyltransferase Tt1512 From Thermus Thermophilus Hb8.gi|56966832|pdb|1WG8|B Chain B, Crystal Structure Of A Predicted S-Adenosylmethionine- Dependent Methyltransferase Tt1512 From Thermus Thermophilus Hb8 | 5.00E-44 | 65.1 | 27.9 | 39.0 | Name=SSF81799;length=103;Note=Putative methyltransferase TM0872 insert domain;Dbxref=SUPERFAMILY:SSF81799;database=SUPERFAMILY |
| solcap_snp_sl_66622 | I | SL2.40ch11 | 481190 | exon | R | G | A | + | caG | caA | Q | Q | sSNP | Solyc11g005620.1.1 | # | ATCATTGTTCCAGCCCCTTCATCAGTGAGAATCTCAAGAAGTAAGGAATG[T/C]TGCAGCCTTCCATCGATAATACTTGCAGTCTTCACCCCTTGAGCTAAAGA | 0.2 | 0.49 | 0 | 0 | 0 | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | TT | TT | TT | TT | TC | CC | CC | - | - | - | gi|14140161|emb|CAC39078.1| acetylglutamate kinase-like protein [Oryza sativa]gi|49387584|dbj|BAD25759.1| putative acetylglutamate kinase [Oryza sativa Japonica Group]gi|49388569|dbj|BAD25688.1| putative acetylglutamate kinase [Oryza sativa Japonica Group] | acetylglutamate kinase-like protein | 1.00E-124 | 99.7 | 62.8 | 72.0 | E | KOG2436 | Acetylglutamate kinase/acetylglutamate synthase | 1.00E-119 | 100.0 | 63.4 | 72.6 | K00930_vvi-100252493 | 1.00E-140 | 101.2 | 73.8 | 81.6 | Solyc11g005620.1.1 | 2RD5 | gi|158430790|pdb|2RD5|B Chain B, Structural Basis For The Regulation Of N-Acetylglutamate Kinase By Pii In Arabidopsis Thaliana | 1.00E-119 | 81.8 | 63.4 | 72.6 | Name=PR00474;length=21;Note=GLU5KINASE;Dbxref=PRINTS:PR00474;database=PRINTS |
| solcap_snp_sl_36173 | I | SL2.40ch11 | 502388 | 3utr | Y | C | T | - | # | # | # | # | uSNP | Solyc11g005680.1.1 | # | CTGGACACTTGCAAAAAGTTTGTTAGGGTATTTTTGTATTGTTTGCATTT[A/G]AACTTCCTTGTCCCGCCTTTTGGAGATCTATAGTTCCTATAAATCCTCCG | 0.47 | 0 | 0 | 0.32 | 0.36 | GG | AA | GG | GG | AA | GG | AA | GG | GG | GG | GG | GG | GG | GG | GG | GG | AA | GG | AG | GG | GG | AG | GG | GG | GG | GG | GG | GG | AA | AA | GG | AG | AA | AA | AA | AA | AA | AA | AA | AA | - | - | - | gi|40287492|gb|AAR83860.1| putative ribosomal protein [Capsicum annuum] | putative ribosomal protein | 1.00E-83 | 100.0 | 99.3 | 100.0 | J | KOG3311 | Ribosomal protein S18 | 2.00E-80 | 100.0 | 91.4 | 96.7 | K02964_rcu-RCOM_0961900 | 3.00E-81 | 100.0 | 94.7 | 98.0 | Solyc11g005680.1.1 | 3IZ6 | gi|313103638|pdb|3IZ6|M Chain M, Localization Of The Small Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome | 2.00E-77 | 100.0 | 86.8 | 94.7 | Name=PS00646;length=14;Note=RIBOSOMAL_S13_1;Dbxref=PROSITE:PS00646;database=PROSITE |
| solcap_snp_sl_25521 | I | SL2.40ch11 | 502449 | 3utr | M | C | A | - | # | # | # | # | uSNP | Solyc11g005680.1.1 | # | ATAAATCGTCTACATGCAAATTCCTTTATAATGCTTTATGCTTCTCTTTA[T/G]AATTCGGAATCTGGACACTTGCAAAAAGTTTGTTAGGGTATTTTTGTATT | 0.39 | 0.47 | 0 | 0.32 | 0.36 | GG | TT | GG | GG | TT | GG | TT | GG | GG | GG | GG | GG | GG | GG | GG | GG | TT | GG | TG | GG | GG | TG | GG | GG | GG | GG | GG | GG | TT | TT | GG | TG | TT | TT | TT | GG | GG | GG | GG | GG | - | - | - | gi|40287492|gb|AAR83860.1| putative ribosomal protein [Capsicum annuum] | putative ribosomal protein | 1.00E-83 | 100.0 | 99.3 | 100.0 | J | KOG3311 | Ribosomal protein S18 | 2.00E-80 | 100.0 | 91.4 | 96.7 | K02964_rcu-RCOM_0961900 | 3.00E-81 | 100.0 | 94.7 | 98.0 | Solyc11g005680.1.1 | 3IZ6 | gi|313103638|pdb|3IZ6|M Chain M, Localization Of The Small Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome | 2.00E-77 | 100.0 | 86.8 | 94.7 | Name=PS00646;length=14;Note=RIBOSOMAL_S13_1;Dbxref=PROSITE:PS00646;database=PROSITE |
| solcap_snp_sl_66587 | I | SL2.40ch11 | 690717 | exon | Y | T | C | + | aTa | aCa | I | T | cSNP | Solyc11g005860.1.1 | # | TGGACCGTTGAGCTGGGAATTTGGGAAGGAGGCTAGCAATGCGCTTGGCT[A/G]TTTCAAGGTACTTTACGTACTTGCAAATGAGACCTTCTTTTGCGGGGCTT | 0.32 | 0 | 0 | 0 | 0 | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | GG | GG | GG | GG | GG | GG | GG | GG | - | - | - | gi|255552410|ref|XP_002517249.1| cysteine desulfurylase, putative [Ricinus communis]gi|223543620|gb|EEF45149.1| cysteine desulfurylase, putative [Ricinus communis] | cysteine desulfurylase, putative | 0 | 96.8 | 63.8 | 78.6 | R | KOG2840 | Uncharacterized conserved protein with similarity to predicted ATPase of the PP-loop superfamily | 4.00E-28 | 136.7 | 12.2 | 17.3 | - | - | - | - | - | Solyc11g005860.1.1 | - | - | - | - | - | - | Name=PF00266;length=232;Note=Aminotran_5;Dbxref=PFAM:PF00266;database=PFAM |
| solcap_snp_sl_15634 | I | SL2.40ch11 | 719356 | exon | Y | T | C | + | cTa | cCa | L | P | cSNP | Solyc11g005910.1.1 | # | CATCATCCTTCTCCACGGATTTCCTGAAGAGCAATGCATCTCTTACTTTT[A/G]GACCCGGAATCAACTTCTTAAAAATCTTATTTTCCTCAGGCGACGATATC | 0.47 | 0 | 0 | 0.18 | 0.46 | AA | GG | AA | AA | AA | GG | GG | AA | GG | AA | AA | GG | AA | AA | AA | AA | GG | AA | AA | AA | AA | AG | AA | AA | AA | AA | AA | AA | AA | AA | AA | AG | GG | GG | GG | GG | GG | GG | GG | GG | - | - | - | gi|255552428|ref|XP_002517258.1| phosphatidylinositol 4-kinase, putative [Ricinus communis]gi|223543629|gb|EEF45158.1| phosphatidylinositol 4-kinase, putative [Ricinus communis] | phosphatidylinositol 4-kinase, putative | 0 | 90.7 | 69.8 | 78.0 | TU | KOG0903 | Phosphatidylinositol 4-kinase, involved in intracellular trafficking and secretion | 0 | 98.9 | 70.2 | 81.3 | K00888_pop-POPTR_595372 | 0 | 97.9 | 74.0 | 84.0 | Solyc11g005910.1.1 | 3QAQ | gi|327200648|pdb|3QAQ|A Chain A, Crystal Structure Of Pi3k-Gamma In Complex With Triazine-Benzimidazole 1gi|327200649|pdb|3QAR|A Chain A, Crystal Structure Of Pi3k-Gamma In Complex With Triazine-Benzimidazole 32gi|327200661|pdb|3QJZ|A Chain A, Crystal Structure Of Pi3k-Gamma In Complex With Benzothiazole 1gi|327200662|pdb|3QK0|A Chain A, Crystal Structure Of Pi3k-Gamma In Complex With Benzothiazole 82gi|335892540|pdb|3S2A|A Chain A, Crystal Structure Of Pi3k-Gamma In Complex With A Quinoline Inhibitor | 4.00E-30 | 84.7 | 7.4 | 11.8 | Name=PS00916;length=21;Note=PI3_4_KINASE_2;Dbxref=PROSITE:PS00916;database=PROSITE |
| solcap_snp_sl_15633 | I | SL2.40ch11 | 719713 | exon | W | A | T | + | aAc | aTc | N | I | cSNP | Solyc11g005910.1.1 | # | GTTTGAAAAATCCATCTGTACTTGAGTGCACATCCTCATCATCATCTTTG[A/T]TGGTACTCAAAAGCCTCCTGAAGAAACCATCCTTCTCTGATTCCTCTGCA | 0.29 | 0 | 0 | 0.18 | 0.46 | TT | AA | TT | TT | TT | AA | AA | TT | AA | TT | TT | AA | TT | TT | TT | TT | AA | TT | TT | TT | TT | TA | TT | TT | TT | TT | TT | TT | TT | TT | TT | TA | TT | TT | TT | TT | TT | TT | TT | TT | 1.50E-28 | PI3_PI4_kinase | Phosphatidylinositol 3- and 4-kinase | gi|255552428|ref|XP_002517258.1| phosphatidylinositol 4-kinase, putative [Ricinus communis]gi|223543629|gb|EEF45158.1| phosphatidylinositol 4-kinase, putative [Ricinus communis] | phosphatidylinositol 4-kinase, putative | 0 | 90.7 | 69.8 | 78.0 | TU | KOG0903 | Phosphatidylinositol 4-kinase, involved in intracellular trafficking and secretion | 0 | 98.9 | 70.2 | 81.3 | K00888_pop-POPTR_595372 | 0 | 97.9 | 74.0 | 84.0 | Solyc11g005910.1.1 | 3QAQ | gi|327200648|pdb|3QAQ|A Chain A, Crystal Structure Of Pi3k-Gamma In Complex With Triazine-Benzimidazole 1gi|327200649|pdb|3QAR|A Chain A, Crystal Structure Of Pi3k-Gamma In Complex With Triazine-Benzimidazole 32gi|327200661|pdb|3QJZ|A Chain A, Crystal Structure Of Pi3k-Gamma In Complex With Benzothiazole 1gi|327200662|pdb|3QK0|A Chain A, Crystal Structure Of Pi3k-Gamma In Complex With Benzothiazole 82gi|335892540|pdb|3S2A|A Chain A, Crystal Structure Of Pi3k-Gamma In Complex With A Quinoline Inhibitor | 4.00E-30 | 84.7 | 7.4 | 11.8 | Name=PS00916;length=21;Note=PI3_4_KINASE_2;Dbxref=PROSITE:PS00916;database=PROSITE |
| solcap_snp_sl_15632 | I | SL2.40ch11 | 743301 | exon | R | G | A | + | ccG | ccA | P | P | sSNP | Solyc11g005920.1.1 | # | AGATAGTACATAATCAGCTCAACATCAGTAGGGTGAAAACGAAACCCAGG[T/C]GGAAGCCTTGCCATCAAATGATCCCAAAAAAAAAAAGGAACTAAATTCAA | 0.29 | 0 | 0 | 0.18 | 0.46 | CC | TT | CC | CC | CC | TT | TT | CC | TT | CC | CC | TT | CC | CC | CC | CC | TT | CC | CC | CC | CC | TC | CC | CC | CC | CC | CC | CC | CC | CC | CC | TC | CC | CC | CC | CC | CC | CC | CC | CC | 9.10E-46 | NAM | No apical meristem (NAM) protein | gi|21105732|gb|AAM34765.1|AF509865_1 nam-like protein 2 [Petunia x hybrida] | nam-like protein 2 | 1.00E-180 | 70.9 | 46.6 | 54.4 | - | noCOG | 9.00E-72 | 71.2 | 26.5 | 34.9 | - | - | - | - | - | Solyc11g005920.1.1 | 1UT4 | gi|47169275|pdb|1UT4|A Chain A, Structure Of The Conserved Domain Of Anac, A Member Of The Nac Family Of Transcription Factorsgi|47169276|pdb|1UT4|B Chain B, Structure Of The Conserved Domain Of Anac, A Member Of The Nac Family Of Transcription Factorsgi|47169277|pdb|1UT7|A Chain A, Structure Of The Conserved Domain Of Anac, A Member Of The Nac Family Of Transcription Factorsgi|47169278|pdb|1UT7|B Chain B, Structure Of The Conserved Domain Of Anac, A Member Of The Nac Family Of Transcription Factors | 2.00E-37 | 24.9 | 10.0 | 14.7 | Name=PS51005;length=151;Note=NAC;Dbxref=PROFILE:PS51005;database=PROFILE | |
| solcap_snp_sl_15631 | I | SL2.40ch11 | 746762 | exon | Y | T | C | + | tgT | tgC | C | C | sSNP | Solyc11g005920.1.1 | # | TTGCTTCCAAAACAAAGCTGCTGCATGCCATTGTTGGAGTTATATGGCGT[A/G]CAGAAATAGCCCGGCACCAGTTGTCCAGTTCCAATGGTTTCAGCAGGGTG | 0.26 | 0 | 0 | 0.18 | 0.42 | AA | GG | AA | AA | AA | AA | GG | AA | GG | AA | AA | GG | AA | AA | AA | AA | GG | AA | AA | AA | AA | AG | AA | AA | AA | AA | AA | AA | AA | AA | AA | AG | AA | AA | AA | AA | AA | AA | AA | AA | - | - | - | gi|21105732|gb|AAM34765.1|AF509865_1 nam-like protein 2 [Petunia x hybrida] | nam-like protein 2 | 1.00E-180 | 70.9 | 46.6 | 54.4 | - | noCOG | 9.00E-72 | 71.2 | 26.5 | 34.9 | - | - | - | - | - | Solyc11g005920.1.1 | 1UT4 | gi|47169275|pdb|1UT4|A Chain A, Structure Of The Conserved Domain Of Anac, A Member Of The Nac Family Of Transcription Factorsgi|47169276|pdb|1UT4|B Chain B, Structure Of The Conserved Domain Of Anac, A Member Of The Nac Family Of Transcription Factorsgi|47169277|pdb|1UT7|A Chain A, Structure Of The Conserved Domain Of Anac, A Member Of The Nac Family Of Transcription Factorsgi|47169278|pdb|1UT7|B Chain B, Structure Of The Conserved Domain Of Anac, A Member Of The Nac Family Of Transcription Factors | 2.00E-37 | 24.9 | 10.0 | 14.7 | Name=PS51005;length=151;Note=NAC;Dbxref=PROFILE:PS51005;database=PROFILE | |
| solcap_snp_sl_66569 | I | SL2.40ch11 | 758575 | exon | Y | C | T | - | Gta | Ata | V | I | cSNP | Solyc11g005940.1.1 | # | ATGTTTCAACTTATAATGTGCTACTTCATGGGCTTGGTGAGAAGGGTAAA[A/G]TAGATGAAGCCTTGTTGCTCTGGGATGAATGTCGAAGCAAGGGACTTGTC | 0.38 | 0 | 0 | 0 | 0.21 | GG | GG | GG | GG | AA | AA | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | AA | AA | AA | AA | AA | AA | AA | AA | 4.60E-168 | PPR_1 | PPR repeat | gi|255557743|ref|XP_002519901.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis]gi|223540947|gb|EEF42505.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] | pentatricopeptide repeat-containing protein, putative | 0 | 98.1 | 45.3 | 58.6 | R | KOG4197 | FOG: PPR repeat | 0 | 102.8 | 45.7 | 64.9 | - | - | - | - | - | Solyc11g005940.1.1 | - | - | - | - | - | - | Name=TIGR00756;length=35;Note=PPR: pentatricopeptide repeat domain;Dbxref=TIGRFAMs:TIGR00756;database=TIGRFAMs |
| solcap_snp_sl_36166 | I | SL2.40ch11 | 762353 | 5utr | M | C | A | + | # | # | # | # | rSNP | Solyc11g005950.1.1 | # | TAAAAGATACAGAACGACAGTATGTATGTTTGAAACTTGGAATGGTTCAA[T/G]AACTACACAGTTTACAGAGTACTCAGTTTGATCCGATATGTAGAAATGTG | 0.14 | 0.22 | 0 | 0 | 0.21 | GG | GG | GG | GG | TT | TT | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | TT | GG | GG | GG | GG | GG | GG | GG | - | - | - | gi|255571375|ref|XP_002526636.1| transcription regulator, putative [Ricinus communis]gi|223534028|gb|EEF35748.1| transcription regulator, putative [Ricinus communis] | transcription regulator, putative | 0 | 102.9 | 61.8 | 74.1 | - | noCOG | 1.00E-145 | 99.6 | 51.7 | 66.9 | - | - | - | - | - | Solyc11g005950.1.1 | - | No_hits | - | - | - | - | Name=PS50097;length=75;Note=BTB;Dbxref=PROFILE:PS50097;database=PROFILE | |
| solcap_snp_sl_21824 | I | SL2.40ch11 | 791672 | exon | R | A | G | - | aTg | aCg | M | T | cSNP | Solyc11g005990.1.1 | # | AAGGCTAGTTCACCAAGCAGACCTTTTCGAACCTAAAAGAAAGAAACAAA[T/C]GACAAACTCAGGGGAGAATTCTGTTCTTCGTGCTCCTACCAAGCCCATGT | 0.32 | 0 | 0 | 0.18 | 0.48 | TT | CC | TT | TT | CC | CC | CC | TT | CC | TT | TT | CC | TT | TT | TT | TT | CC | TT | TT | TT | TT | TC | TT | TT | TT | TT | TT | TT | TT | TT | TT | TC | TT | TT | TT | TT | TT | TT | TT | TT | - | - | - | gi|255558438|ref|XP_002520244.1| Transcriptional corepressor SEUSS, putative [Ricinus communis]gi|223540463|gb|EEF42030.1| Transcriptional corepressor SEUSS, putative [Ricinus communis] | Transcriptional corepressor SEUSS, putative | 2.00E-79 | 114.1 | 17.7 | 23.5 | - | noCOG | 4.00E-77 | 110.6 | 17.9 | 23.3 | - | - | - | - | - | Solyc11g005990.1.1 | - | - | - | - | - | - | # | |
| solcap_snp_sl_21821 | I | SL2.40ch11 | 934270 | exon | R | A | G | - | acT | acC | T | T | sSNP | Solyc11g006190.1.1 | # | CAGTTTATGATGCCTTCTCGCGGTATGCAACCAACACCATTACATTCAAC[T/C]GATTGGAGAGTTACCACCGGTCAGGGCTTGCACCAGTCTCCAGAAAATGG | 0.18 | 0.38 | 0 | 0 | 0.21 | TT | CC | TT | TT | CC | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | CC | CC | TT | TT | TT | TT | TT | - | - | - | gi|324388024|gb|ADY38786.1| DNA-binding protein [Coffea arabica] | DNA-binding protein | 1.00E-77 | 104.2 | 60.2 | 71.8 | - | noCOG | 5.00E-57 | 124.0 | 38.9 | 50.4 | - | - | - | - | - | Solyc11g006190.1.1 | - | - | - | - | - | - | Name=PF03479;length=118;Note=DUF296;Dbxref=PFAM:PF03479;database=PFAM | |
| solcap_snp_sl_21820 | I | SL2.40ch11 | 934339 | exon | R | G | A | - | aaC | aaT | N | N | sSNP | Solyc11g006190.1.1 | # | CAATTTGGTGGATCACCATTATCATTTCGTTCAATGGTTGATTCTTCTAA[T/C]CAAAGTATGGGTGGAGGTCAGTTTATGATGCCTTCTCGCGGTATGCAACC | 0.35 | 0.22 | 0 | 0 | 0.21 | CC | TT | CC | CC | TT | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | TT | TT | TT | TT | TT | TT | TT | - | - | - | gi|324388024|gb|ADY38786.1| DNA-binding protein [Coffea arabica] | DNA-binding protein | 1.00E-77 | 104.2 | 60.2 | 71.8 | - | noCOG | 5.00E-57 | 124.0 | 38.9 | 50.4 | - | - | - | - | - | Solyc11g006190.1.1 | - | - | - | - | - | - | Name=PF03479;length=118;Note=DUF296;Dbxref=PFAM:PF03479;database=PFAM | |
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