| HMMscan | nr | KOG | KEGG | PDB | ITAG2.3 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| SNP ID | Array type ( I: Infinium G: Goldengate) |
Chromosome | Position on the SL2.40 | Location | IUPAC | SNP genotype (Heinz 1706-BG) | SNP genotype (Mutation) | Strand | Codon (Heinz 1706-BG) | Codon (Mutation) | Amino acid residue (Heinz 1706-BG) | Amino acid residue (Mutation) | SNP category | ITAG gene model | Functional site | Flanking sequences on SNP | HZ (The 40 lines) | HZ (cluster 1) | HZ (cluster 2) | HZ (cluster 3) | HZ (cluster 4) | San Marzano | Rutgers | Ponderosa | Aichi First | S. lycopersicum var cerasiforme (WIR25/30) | S. lycopersicum var cerasiforme (TOMJPF00009) | Earliana | Best Of All | Money Maker | Ailsa Craig | LA925 | Fruit | Rio Grande | Marglobe | Heinz 1706-BG | Tomato Chuukanbohon Nou 9 | Furikoma | Tomato Chuukanbohon Nou 11 | Reika | Momotaro 8 | Labell | Matrix | Geronimo | Micro-Tom_AM | Micro-Tom TGRC (LA3911) | Micro-Tom_MM | Micro-Tom | Micro-Tom NBRP (TOMJPF00001) | M82_MM | M82 | Regina | Sweet100 | S. pimpinellifolium (TOMJPF00012) | S. pimpinellifolium (LS1513) | S. pimpinellifolium (PI344102) | S. chilense (LA1958) | S. peruvianum (WIR2020) | S. peruvianum (TOMJPF00010) | S. pennellii (TOMJPF00008) | S. pennellii (LA716) | E-value | Model | HMMscan definition | nr definition | Product (KDRI) | E-value | Length% | Identity% | Positive% | KOG id | KOG No. | KOG definition | E-value | Length% | Identity% | Positive% | KO | E-value | Length% | Identity% | Positive% | Gene name [structural model (tomato)] (Structures with links can be browsed by Jmol.) |
PDB id | PDB definition | E-value | Length% | Identity% | Positive% | ITAG (interpro) |
| solcap_snp_sl_28840 | I | SL2.40ch12 | 53649 | exon | Y | T | C | - | Att | Gtt | I | V | cSNP | Solyc12g005100.1.1 | # | TGTAACTTCACTGCATGCTATACAAGATTTGACAAAAATGACATCACTAA[T/C]GTCATTCCGTGTAGCTTTAACCACCAGTAAATTGCTGGAATGAACAATCA | 0.16 | 0.38 | 0 | 0.18 | 0 | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TC | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | CC | TT | TT | CC | CC | TT | TT | TT | TT | TT | 8.90E-11 | Vps35 | Vacuolar protein sorting-associated protein 35 | gi|255577123|ref|XP_002529445.1| esophageal cancer associated protein, putative [Ricinus communis]gi|223531061|gb|EEF32911.1| esophageal cancer associated protein, putative [Ricinus communis] | esophageal cancer associated protein, putative | 0 | 132.7 | 56.2 | 72.9 | S | KOG3682 | Predicted membrane protein (associated with esophageal cancer in humans) | 1.00E-167 | 145.3 | 48.1 | 63.7 | - | - | - | - | - | Solyc12g005100.1.1 | - | - | - | - | - | - | Name=PTHR13673;length=628;Note=ESOPHAGEAL CANCER ASSOCIATED PROTEIN;Dbxref=PANTHER:PTHR13673;database=PANTHER |
| solcap_snp_sl_17703 | I | SL2.40ch12 | 94799 | exon | R | G | A | + | agG | agA | R | R | sSNP | Solyc12g005110.1.1 | # | CAGGAAAATCTGATGGAGAACCAGGCACTTCGTGGTGAAGAGCTTATTAG[A/G]CCGATCAATCCAAAAACGGATGGTTAAAGAGAGGAAACAAGTATGTTATC | 0.5 | 0 | 0 | 0.42 | 0.39 | GG | AA | AA | GG | GG | AA | GG | GG | GG | AA | GG | GG | GG | AG | GG | GG | GG | AA | AG | AG | AG | GG | GG | AA | AA | AA | AA | AA | GG | GG | AA | AG | AA | AA | AA | AA | AA | AA | AA | AA | - | - | - | - | - | - | - | - | - | R | KOG1347 | Uncharacterized membrane protein, predicted efflux pump | 3.00E-22 | 94.5 | 30.9 | 47.3 | - | - | - | - | - | Solyc12g005110.1.1 | - | - | - | - | - | - | Name=PF02178;length=13;Note=AT_hook;Dbxref=PFAM:PF02178;database=PFAM |
| 15328_509 | G | SL2.40ch12 | 100277 | exon | R | A | G | - | ggT | ggC | G | G | sSNP | Solyc12g005130.1.1 | # | GTTCACAAACACTGGATGGGGTGAAAACTCAAATATCAGATTTCTGAAGAAACACATGGG[T/C]GCTTCTTTTGACCAACGTCCTCAACCGTGGGTTAGCAACCTTACCGTTGAAGACATACAT | 0.07 | 0 | 0.5 | 0 | 0 | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | CC | TT | TT | TT | TT | TT | - | - | - | - | - | - | - | - | - | - | noCOG | 1.00E-174 | 114.2 | 60.7 | 71.4 | - | - | - | - | - | Solyc12g005130.1.1 | - | - | - | - | - | - | # | ||||||||||||||
| SGN-U575165_snp853_solcap_snp_sl_28846 | I | SL2.40ch12 | 124344 | exon | W | A | T | - | aaT | aaA | N | K | cSNP | Solyc12g005180.1.1 | # | ATTGCTGATAGCTGACTGGTAGTCTTTACCTCACAGTCTTGTGGAGTGTC[A/T]TTGATTTTGCTTGGATCATATCCGAAACTTGCTAAGTAGTTCTTGTACCT | 0.4 | 0 | 0.32 | 0.32 | 0 | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | TA | AA | TA | AA | AA | AA | AA | TT | AA | AA | AA | AA | TT | AA | TT | TT | TT | TT | TT | TT | TT | TT | 7.80E-10 | Lipocalin_2 | Lipocalin-like domain | gi|77744913|gb|ABB02410.1| chloroplast lipocalin [Solanum tuberosum] | chloroplast lipocalin | 0 | 100.0 | 96.4 | 97.6 | M | KOG4824 | Apolipoprotein D/Lipocalin | 1.00E-119 | 106.0 | 66.4 | 76.6 | - | - | - | - | - | Solyc12g005180.1.1 | - | - | - | - | - | - | Name=coil;length=22;Note=coiled-coil;Dbxref=COIL:coil;database=COIL |
| CL017365-0260 | I | SL2.40ch12 | 147415 | exon | W | T | A | + | aTa | aAa | I | K | cSNP | Solyc12g005230.1.1 | # | TCTGATCATTCGAACACCACAAGATCCAATCATACTCTGTATTTTCAGCTCAATTTGAACAACAAGATGAAGGACAAAGGTGTTCGTTACGACGAGATTA[A/T]ATTAAGCTTCTTCTACTATGGTACAAATACAAGTATCCCAATNGGNAATAGCACAATAAATGGATTTTACCAAGGCCATGACAAGAAAGCAAAGAAAAAA | 0.1 | 0.38 | 0 | 0 | 0 | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | AA | AA | - | - | - | gi|255563665|ref|XP_002522834.1| breast carcinoma amplified sequence, putative [Ricinus communis]gi|223537918|gb|EEF39532.1| breast carcinoma amplified sequence, putative [Ricinus communis] | breast carcinoma amplified sequence, putative | 0 | 90.3 | 45.3 | 57.6 | R | KOG2109 | WD40 repeat protein | 1.00E-128 | 77.3 | 32.1 | 44.2 | - | - | - | - | - | Solyc12g005230.1.1 | - | - | - | - | - | - | Name=SM00320;length=42;Note=no description;Dbxref=SMART:SM00320;database=SMART |
| SGN-U580402_snp388_CL017365-0306 | I | SL2.40ch12 | 147461 | exon | W | T | A | + | ggT | ggA | G | G | sSNP | Solyc12g005230.1.1 | # | ATTATATTAAGCTTCTTCTACTATGGTACAAATACAAGTATCCCAATTGG[A/T]AATAGCACAATAAATGGATTTTACCAAGGCCATGACAAGAAAGCAAAGAA | 0.12 | 0.38 | 0 | 0.18 | 0 | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TA | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | AA | AA | TT | TT | TT | TT | TT | - | - | - | gi|255563665|ref|XP_002522834.1| breast carcinoma amplified sequence, putative [Ricinus communis]gi|223537918|gb|EEF39532.1| breast carcinoma amplified sequence, putative [Ricinus communis] | breast carcinoma amplified sequence, putative | 0 | 90.3 | 45.3 | 57.6 | R | KOG2109 | WD40 repeat protein | 1.00E-128 | 77.3 | 32.1 | 44.2 | - | - | - | - | - | Solyc12g005230.1.1 | - | - | - | - | - | - | Name=SM00320;length=42;Note=no description;Dbxref=SMART:SM00320;database=SMART |
| SGN-U573565_snp665 | I | SL2.40ch12 | 155492 | exon | W | A | T | - | aTg | aAg | M | K | cSNP | Solyc12g005240.1.1 | # | GGCTTCAATATTGACTGTAATGAAGGAGATTTCTGATACATTGTACCCAA[A/T]GCCTGTCGTGATTTTTAATCCTAAATGGGGTTTTGATGAAGAGAGTAGTT | 0.36 | 0.22 | 0.32 | 0.18 | 0 | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | AT | TT | TT | TT | TT | TT | TT | AA | TT | TT | TT | TT | AA | TT | TT | AA | AA | AA | AA | AA | AA | AA | 1.40E-25 | DUF1995 | Domain of unknown function (DUF1995) | - | - | - | - | - | - | - | noCOG | 9.00E-81 | 105.3 | 48.3 | 61.7 | - | - | - | - | - | Solyc12g005240.1.1 | - | - | - | - | - | - | Name=PF09353;length=235;Note=DUF1995;Dbxref=PFAM:PF09353;database=PFAM | |
| SGN-U577657_snp19916_solcap_snp_sl_28890 | I | SL2.40ch12 | 235818 | 3utr | M | C | A | - | # | # | # | # | uSNP | Solyc12g005400.1.1 | # | TGGATTGATGGTGTAGAAGGTTAATGCAATGCTTCATGTAAAGAAGAACA[A/C]TGAGTGGAGATTTAAGATTATATAAGATTAGAAATAATTATATTCAGGAA | 0.4 | 0 | 0.32 | 0.32 | 0 | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | AC | CC | AC | CC | CC | CC | CC | AA | CC | CC | CC | CC | AA | CC | AA | AA | AA | AA | AA | AA | AA | AA | - | - | - | gi|255569589|ref|XP_002525760.1| Cyclic nucleotide-gated ion channel, putative [Ricinus communis]gi|223534910|gb|EEF36596.1| Cyclic nucleotide-gated ion channel, putative [Ricinus communis] | Cyclic nucleotide-gated ion channel, putative | 0 | 100.1 | 74.1 | 81.2 | PT | KOG0498 | K+-channel ERG and related proteins, contain PAS/PAC sensor domain | 0 | 101.2 | 68.7 | 78.7 | K05391_osa-4339240 | 0 | 100.7 | 59.8 | 71.9 | Solyc12g005400.1.1 | 1WGP | gi|159163331|pdb|1WGP|A Chain A, Solution Structure Of The Cnmp-Binding Domain From Arabidopsis Thaliana Cyclic Nucleotide-Regulated Ion Channel | 1.00E-23 | 20.0 | 8.0 | 11.5 | Name=PF00027;length=99;Note=cNMP_binding;Dbxref=PFAM:PF00027;database=PFAM |
| SGN-U575806_snp19756 | I | SL2.40ch12 | 235978 | 3utr | W | A | T | - | # | # | # | # | uSNP | Solyc12g005400.1.1 | # | ATGTAGTAGTCTCTTCGTTTCAATTTATGTGAATTCGTGGACACCGAGTT[A/T]AAGAAAGAAAAGAAGATTTTGATCTACAGTCTGTAGATTTTGAGGTCATG | 0.07 | 0.22 | 0 | 0.18 | 0 | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TA | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | AA | TT | TT | TT | TT | TT | TT | TT | - | - | - | gi|255569589|ref|XP_002525760.1| Cyclic nucleotide-gated ion channel, putative [Ricinus communis]gi|223534910|gb|EEF36596.1| Cyclic nucleotide-gated ion channel, putative [Ricinus communis] | Cyclic nucleotide-gated ion channel, putative | 0 | 100.1 | 74.1 | 81.2 | PT | KOG0498 | K+-channel ERG and related proteins, contain PAS/PAC sensor domain | 0 | 101.2 | 68.7 | 78.7 | K05391_osa-4339240 | 0 | 100.7 | 59.8 | 71.9 | Solyc12g005400.1.1 | 1WGP | gi|159163331|pdb|1WGP|A Chain A, Solution Structure Of The Cnmp-Binding Domain From Arabidopsis Thaliana Cyclic Nucleotide-Regulated Ion Channel | 1.00E-23 | 20.0 | 8.0 | 11.5 | Name=PF00027;length=99;Note=cNMP_binding;Dbxref=PFAM:PF00027;database=PFAM |
| SGN-U575806_snp19669 | I | SL2.40ch12 | 236065 | 3utr | W | A | T | - | # | # | # | # | uSNP | Solyc12g005400.1.1 | # | ACAAATGGAATGTTACCTTCTTTCTGTTATGAGATAGGAGCACATCCCCC[A/T]CCCTCTATATGTCCTTCAATTATCCATTCATGTGATATGTAGTAGTCTCT | 0.07 | 0.22 | 0 | 0.18 | 0 | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TA | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | TT | AA | TT | TT | TT | TT | TT | TT | TT | - | - | - | gi|255569589|ref|XP_002525760.1| Cyclic nucleotide-gated ion channel, putative [Ricinus communis]gi|223534910|gb|EEF36596.1| Cyclic nucleotide-gated ion channel, putative [Ricinus communis] | Cyclic nucleotide-gated ion channel, putative | 0 | 100.1 | 74.1 | 81.2 | PT | KOG0498 | K+-channel ERG and related proteins, contain PAS/PAC sensor domain | 0 | 101.2 | 68.7 | 78.7 | K05391_osa-4339240 | 0 | 100.7 | 59.8 | 71.9 | Solyc12g005400.1.1 | 1WGP | gi|159163331|pdb|1WGP|A Chain A, Solution Structure Of The Cnmp-Binding Domain From Arabidopsis Thaliana Cyclic Nucleotide-Regulated Ion Channel | 1.00E-23 | 20.0 | 8.0 | 11.5 | Name=PF00027;length=99;Note=cNMP_binding;Dbxref=PFAM:PF00027;database=PFAM |
| SGN-U575806_snp19591 | I | SL2.40ch12 | 236143 | exon | R | G | A | - | gaC | gaT | D | D | sSNP | Solyc12g005400.1.1 | # | AGACTCAGGCTATATACAGCTTTGCTCACTTCACCAAAGCCTAATCAGGA[T/C]GATTTTGATTTTTAAAAAGAGCAACAAACAAATGGAATGTTACCTTCTTT | 0.27 | 0.38 | 0 | 0.18 | 0 | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | TC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | TT | CC | CC | TT | TT | TT | TT | TT | - | - | - | gi|255569589|ref|XP_002525760.1| Cyclic nucleotide-gated ion channel, putative [Ricinus communis]gi|223534910|gb|EEF36596.1| Cyclic nucleotide-gated ion channel, putative [Ricinus communis] | Cyclic nucleotide-gated ion channel, putative | 0 | 100.1 | 74.1 | 81.2 | PT | KOG0498 | K+-channel ERG and related proteins, contain PAS/PAC sensor domain | 0 | 101.2 | 68.7 | 78.7 | K05391_osa-4339240 | 0 | 100.7 | 59.8 | 71.9 | Solyc12g005400.1.1 | 1WGP | gi|159163331|pdb|1WGP|A Chain A, Solution Structure Of The Cnmp-Binding Domain From Arabidopsis Thaliana Cyclic Nucleotide-Regulated Ion Channel | 1.00E-23 | 20.0 | 8.0 | 11.5 | Name=PF00027;length=99;Note=cNMP_binding;Dbxref=PFAM:PF00027;database=PFAM |
| SGN-U575806_snp19552 | I | SL2.40ch12 | 236182 | exon | W | T | A | - | ctA | ctT | L | L | sSNP | Solyc12g005400.1.1 | # | AGACGACCGTTGTCTCGATCTTCTTCATTAACAGAAGACAGACTCAGGCT[A/T]TATACAGCTTTGCTCACTTCACCAAAGCCTAATCAGGACGATTTTGATTT | 0.27 | 0.38 | 0 | 0.18 | 0 | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | TA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | TT | AA | AA | TT | TT | TT | TT | TT | - | - | - | gi|255569589|ref|XP_002525760.1| Cyclic nucleotide-gated ion channel, putative [Ricinus communis]gi|223534910|gb|EEF36596.1| Cyclic nucleotide-gated ion channel, putative [Ricinus communis] | Cyclic nucleotide-gated ion channel, putative | 0 | 100.1 | 74.1 | 81.2 | PT | KOG0498 | K+-channel ERG and related proteins, contain PAS/PAC sensor domain | 0 | 101.2 | 68.7 | 78.7 | K05391_osa-4339240 | 0 | 100.7 | 59.8 | 71.9 | Solyc12g005400.1.1 | 1WGP | gi|159163331|pdb|1WGP|A Chain A, Solution Structure Of The Cnmp-Binding Domain From Arabidopsis Thaliana Cyclic Nucleotide-Regulated Ion Channel | 1.00E-23 | 20.0 | 8.0 | 11.5 | Name=PF00027;length=99;Note=cNMP_binding;Dbxref=PFAM:PF00027;database=PFAM |
| solcap_snp_sl_3123 | I | SL2.40ch12 | 241725 | exon | R | A | G | - | ttT | ttC | F | F | sSNP | Solyc12g005400.1.1 | # | CATAAATGCATCGCATCGGTCATGCATCGAAGAACGGTGACCGTTACCGC[A/G]AACCAACCATCGATAAAAAGGCACATGCAAGTCTCGCTGATAGAGAGAGA | 0.49 | 0.12 | 0.32 | 0.42 | 0.5 | AA | AA | GG | AA | AA | AA | AA | GG | GG | GG | GG | GG | AA | GG | AA | AA | GG | GG | GG | GG | AG | AG | AG | AA | AA | GG | AA | AA | AA | AA | GG | GG | GG | GG | GG | AG | GG | GG | GG | GG | - | - | - | gi|255569589|ref|XP_002525760.1| Cyclic nucleotide-gated ion channel, putative [Ricinus communis]gi|223534910|gb|EEF36596.1| Cyclic nucleotide-gated ion channel, putative [Ricinus communis] | Cyclic nucleotide-gated ion channel, putative | 0 | 100.1 | 74.1 | 81.2 | PT | KOG0498 | K+-channel ERG and related proteins, contain PAS/PAC sensor domain | 0 | 101.2 | 68.7 | 78.7 | K05391_osa-4339240 | 0 | 100.7 | 59.8 | 71.9 | Solyc12g005400.1.1 | 1WGP | gi|159163331|pdb|1WGP|A Chain A, Solution Structure Of The Cnmp-Binding Domain From Arabidopsis Thaliana Cyclic Nucleotide-Regulated Ion Channel | 1.00E-23 | 20.0 | 8.0 | 11.5 | Name=PF00027;length=99;Note=cNMP_binding;Dbxref=PFAM:PF00027;database=PFAM |
| solcap_snp_sl_3124 | I | SL2.40ch12 | 241878 | exon | M | C | A | - | tcG | tcT | S | S | sSNP | Solyc12g005400.1.1 | # | ACTCGATTCCATTCTTGAACCCAAGGCGCTCTAGGGTCTATGACTTTCCA[A/C]GAAAAGAAGTCTGTCAATCCTCCTCCTCGACTACGACTACTACAAATGTT | 0.48 | 0 | 0.32 | 0.32 | 0.5 | CC | CC | AA | CC | CC | CC | CC | AA | AA | AA | AA | AA | CC | AA | CC | CC | AA | AA | AA | AA | AA | AC | AC | CC | CC | AA | CC | CC | CC | CC | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | - | - | - | gi|255569589|ref|XP_002525760.1| Cyclic nucleotide-gated ion channel, putative [Ricinus communis]gi|223534910|gb|EEF36596.1| Cyclic nucleotide-gated ion channel, putative [Ricinus communis] | Cyclic nucleotide-gated ion channel, putative | 0 | 100.1 | 74.1 | 81.2 | PT | KOG0498 | K+-channel ERG and related proteins, contain PAS/PAC sensor domain | 0 | 101.2 | 68.7 | 78.7 | K05391_osa-4339240 | 0 | 100.7 | 59.8 | 71.9 | Solyc12g005400.1.1 | 1WGP | gi|159163331|pdb|1WGP|A Chain A, Solution Structure Of The Cnmp-Binding Domain From Arabidopsis Thaliana Cyclic Nucleotide-Regulated Ion Channel | 1.00E-23 | 20.0 | 8.0 | 11.5 | Name=PF00027;length=99;Note=cNMP_binding;Dbxref=PFAM:PF00027;database=PFAM |
| solcap_snp_sl_28894 | I | SL2.40ch12 | 246795 | 3utr | R | A | G | - | # | # | # | # | uSNP | Solyc12g005410.1.1 | # | TTTTACTACCGCCACCACCAACAAAGTAAAATTGGTTTTACTACAGACAG[A/G]TTAATGCTGATTCGCCAGACATCACTATGAACTTCCCAAAAAAATAAAAA | 0.31 | 0.24 | 0.32 | 0.18 | 0 | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AG | AA | AA | AA | AA | AA | AA | GG | AA | AA | AA | AA | AA | AA | AA | GG | GG | GG | GG | -- | GG | GG | - | - | - | gi|255580851|ref|XP_002531245.1| sodium-bile acid cotransporter, putative [Ricinus communis]gi|223529164|gb|EEF31142.1| sodium-bile acid cotransporter, putative [Ricinus communis] | sodium-bile acid cotransporter, putative | 1.00E-157 | 99.0 | 66.9 | 75.7 | P | KOG2718 | Na+-bile acid cotransporter | 1.00E-152 | 98.3 | 62.0 | 71.3 | K03453_rcu-RCOM_0494130 | 1.00E-158 | 99.0 | 66.9 | 75.7 | Solyc12g005410.1.1 | 3ZUY | gi|350610872|pdb|3ZUY|A Chain A, Crystal Structure Of A Bacterial Homologue Of The Bile Acid Sodium Symporter Asbt | 2.00E-46 | 79.2 | 27.9 | 42.9 | Name=PF01758;length=174;Note=SBF;Dbxref=PFAM:PF01758;database=PFAM |
| solcap_snp_sl_28914 | I | SL2.40ch12 | 304661 | exon | W | A | T | + | Act | Tct | T | S | cSNP | Solyc12g005560.1.1 | # | ACAGAGAACAAGCACAAGATGGAGAGGGATCTGCTGACTGGAGGAGCAAT[A/T]CTGGAGAACAGGAGTTGACAACTGCTCAAGAAGATGTTTCAGACAACATA | 0.05 | 0.22 | 0 | 0 | 0 | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | AA | TT | AA | AA | AA | AA | AA | - | - | - | gi|225447256|ref|XP_002272957.1| PREDICTED: similar to Os04g0636200 [Vitis vinifera] | PREDICTED: similar to Os04g0636200 | 3.00E-35 | 72.8 | 11.1 | 16.5 | - | - | - | - | - | - | - | - | - | Solyc12g005560.1.1 | - | - | - | - | - | - | Name=coil;length=22;Note=coiled-coil;Dbxref=COIL:coil;database=COIL | |||
| solcap_snp_sl_28923 | I | SL2.40ch12 | 351164 | exon | K | G | T | - | Cct | Act | P | T | cSNP | Solyc12g005660.1.1 | # | ATTTTCAACCCGACCCGATAGAATCTCACCGGTTCTCTGGATCTTTGAAG[T/G]CATTTTCACCGGAAATGACTTTACAAACTCAGCTGCTTCGTCACCGCCAT | 0.12 | 0.22 | 0.32 | 0.18 | 0 | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | TG | GG | GG | GG | GG | GG | GG | TT | GG | GG | GG | GG | GG | GG | GG | GG | TT | GG | GG | GG | GG | GG | - | - | - | - | - | - | - | - | - | - | noCOG | 4.00E-25 | 110.4 | 24.3 | 29.2 | - | - | - | - | - | Solyc12g005660.1.1 | - | - | - | - | - | - | Name=coil;length=22;Note=coiled-coil;Dbxref=COIL:coil;database=COIL | |
| solcap_snp_sl_3130 | I | SL2.40ch12 | 376932 | exon | R | G | A | + | Ggc | Agc | G | S | cSNP | Solyc12g005700.1.1 | # | ACAAATCGAGATCTTCATGTGGTTTATTGCATCATCATTTCTTCTCAATT[A/G]GCGGAATTTTGTGTTTCGTACATGCCATATTTTCTGTCGCGTTCTATGCC | 0.05 | 0 | 0 | 0 | 0.11 | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | AA | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | GG | -- | -- | -- | -- | 1.90E-20 | DUF1218 | Protein of unknown function (DUF1218) | - | - | - | - | - | - | - | noCOG | 4.00E-57 | 101.2 | 62.7 | 77.6 | - | - | - | - | - | Solyc12g005700.1.1 | - | No_hits | - | - | - | - | Name=PF06749;length=92;Note=DUF1218;Dbxref=PFAM:PF06749;database=PFAM | |
| Le000721_133 | I | SL2.40ch12 | 491949 | exon | Y | C | T | - | ccG | ccA | P | P | sSNP | Solyc12g005860.1.1 | # | GGCTCATGAATGTACGTAGAGCTAGTGTCCCAAGAGTAGAGCGAGGTAGC[T/C]GGTACTGACAATTGATTCCACATGTTATTCCCCTTTGTAATAGCTTCATA | 0.42 | 0 | 0.48 | 0.32 | 0 | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | CC | TC | CC | TC | CC | CC | TT | TT | TT | CC | CC | CC | CC | CC | CC | TT | TT | TT | TT | TT | TT | TT | TT | - | - | - | gi|171854675|dbj|BAG16527.1| putative aconitase [Capsicum chinense] | putative aconitase | 0 | 101.4 | 88.7 | 92.6 | AJ | KOG0452 | RNA-binding translational regulator IRP (aconitase superfamily) | 0 | 91.5 | 81.9 | 87.5 | K01681_rcu-RCOM_0487910 | 0 | 101.6 | 84.8 | 90.7 | Solyc12g005860.1.1 | 2B3X | gi|88192218|pdb|2B3X|A Chain A, Structure Of An Orthorhombic Crystal Form Of Human Cytosolic Aconitase (Irp1)gi|88192219|pdb|2B3Y|A Chain A, Structure Of A Monoclinic Crystal Form Of Human Cytosolic Aconitase (Irp1)gi|88192220|pdb|2B3Y|B Chain B, Structure Of A Monoclinic Crystal Form Of Human Cytosolic Aconitase (Irp1) | 0 | 90.5 | 55.7 | 70.0 | Name=PF00694;length=131;Note=Aconitase_C;Dbxref=PFAM:PF00694;database=PFAM |
| solcap_snp_sl_17717 | I | SL2.40ch12 | 510496 | intron | Y | C | T | + | # | # | # | # | iSNP | Solyc12g005870.1.1 | # | AATGCGAAGTTAAAGACTTGTTGCTGAGATTAATAGTTTAATACAATACT[T/C]TTTGACAATTAAACAAAATGAAGCTTAAGGAGAGTTTGACTTGGTCATTT | 0.5 | 0 | 0 | 0.42 | 0.46 | CC | TT | TT | CC | CC | TT | CC | TT | TT | CC | TT | CC | CC | CC | CC | CC | CC | CC | TC | CC | TC | CC | TC | TT | TT | TT | TT | TT | CC | CC | CC | TC | TT | TT | TT | TT | TT | TT | TT | TT | - | - | - | gi|255566401|ref|XP_002524186.1| NEDD8-activating enzyme E1 regulatory subunit, putative [Ricinus communis]gi|223536555|gb|EEF38201.1| NEDD8-activating enzyme E1 regulatory subunit, putative [Ricinus communis] | NEDD8-activating enzyme E1 regulatory subunit, putative | 0 | 104.6 | 81.2 | 90.0 | O | KOG2016 | NEDD8-activating complex, APP-BP1/UBA5 component | 0 | 108.0 | 76.6 | 87.0 | K04532_vvi-100251665 | 0 | 104.6 | 82.2 | 91.4 | Solyc12g005870.1.1 | 1R4M | gi|40889581|pdb|1R4M|A Chain A, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complexgi|40889584|pdb|1R4M|C Chain C, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complexgi|40889587|pdb|1R4M|E Chain E, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complexgi|40889590|pdb|1R4M|G Chain G, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complexgi|40889593|pdb|1R4N|A Chain A, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex With Atpgi|40889596|pdb|1R4N|C Chain C, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex With Atpgi|40889599|pdb|1R4N|E Chain E, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex With Atpgi|40889602|pdb|1R4N|G Chain G, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex With Atp | 1.00E-118 | 105.8 | 41.6 | 62.8 | Name=coil;length=22;Note=coiled-coil;Dbxref=COIL:coil;database=COIL |
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