Dca10685.1
Annotation
- 3-exons
- f-1
- sp|Q53ND1_ORYSJ#Retrotransposon protein, putative, Ty1-copia sub-class#Oryza sativa subsp japonica (Rice)#OrderedLocusNames=LOC_Os11g05840#GO:0005622;GO:0004527;GO:0003676;GO:0008270;GO:0015074#3F1P1C
- Repeat List (scaffold1470)
Sequences
Blastp Summary
Trem (Uniprot-tremble)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca10685.1 |
1 |
570 |
575 |
56.69 |
570 |
57 |
0
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| sp|Q53ND1_ORYSJ |
985 |
1534 |
2340 |
23.5 |
AtOs (Arabidopsis thaliana & Oryza sativa)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca10685.1 |
39 |
564 |
575 |
34.95 |
526 |
38 |
7e-90
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| Os11t0656500-01 |
888 |
1383 |
1401 |
35.4 |
Coding region
| seqname |
source |
feature |
start |
end |
score |
strand |
frame |
group |
| scaffold1470 |
Augustus |
mRNA |
28697 |
30642 |
. |
+ |
. |
ID=Dca10685.1;Parent=Dca10685 |
| scaffold1470 |
Augustus |
exon |
28697 |
29304 |
. |
+ |
. |
ID=Dca10685.1.exon1;Parent=Dca10685.1 |
| scaffold1470 |
Augustus |
exon |
29418 |
29532 |
. |
+ |
. |
ID=Dca10685.1.exon2;Parent=Dca10685.1 |
| scaffold1470 |
Augustus |
exon |
29638 |
30642 |
. |
+ |
. |
ID=Dca10685.1.exon3;Parent=Dca10685.1 |
