Dca1387.1
Annotation
- 4-exons
- f-1
- sp|A5BXS4_VITVI#Putative uncharacterized protein#Vitis vinifera (Grape)#ORFNames=VITISV_018267#unknown#0F0P0C
- AT5G14230.1 | Symbols: | CONTAINS InterPro DOMAIN/s: Ankyrin repeat-containing domain (InterPro:IPR020683), Ankyrin repeat (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: XB3 ortholog 2 in Arabidopsis thaliana (TAIR:AT5G57740.1); Has 66374 Blast hits to 25358 proteins in 1201 species: Archae - 121; Bacteria - 8133; Metazoa - 29530; Fungi - 5885; Plants - 3349; Viruses - 785; Other Eukaryotes - 18571 (source: NCBI BLink). | chr5:4591883-4595775 FORWARD LENGTH=751
- Repeat List (scaffold104)
Sequences
Blastp Summary
Trem (Uniprot-tremble)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca1387.1 |
1 |
746 |
746 |
65.14 |
746 |
65 |
0
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| sp|A5BXS4_VITVI |
69 |
818 |
829 |
90.47 |
AtOs (Arabidopsis thaliana & Oryza sativa)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca1387.1 |
1 |
745 |
746 |
59.78 |
745 |
60 |
0
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| AT5G14230.1 |
1 |
738 |
751 |
98.26 |
Coding region
| seqname |
source |
feature |
start |
end |
score |
strand |
frame |
group |
| scaffold104 |
Augustus |
mRNA |
199386 |
207884 |
. |
- |
. |
ID=Dca1387.1;Parent=Dca1387 |
| scaffold104 |
Augustus |
exon |
199386 |
200906 |
. |
- |
. |
ID=Dca1387.1.exon1;Parent=Dca1387.1 |
| scaffold104 |
Augustus |
exon |
202368 |
202505 |
. |
- |
. |
ID=Dca1387.1.exon2;Parent=Dca1387.1 |
| scaffold104 |
Augustus |
exon |
203102 |
203377 |
. |
- |
. |
ID=Dca1387.1.exon3;Parent=Dca1387.1 |
| scaffold104 |
Augustus |
exon |
207579 |
207884 |
. |
- |
. |
ID=Dca1387.1.exon4;Parent=Dca1387.1 |
