Carnation DB

Dca14323.1

Annotation

5-exons
f-1
sp|Q2QUJ4_ORYSJ#Retrotransposon protein, putative, Ty1-copia subclass#Oryza sativa subsp japonica (Rice)#ORFNames=LOC_Os12g16060#GO:0003676;GO:0008270;GO:0015074#2F1P0C
Repeat List (scaffold1678)

Sequences

Blastp Summary

Trem (Uniprot-tremble)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca14323.1	3	592	594	54.04	590	45	3e-156
Target_name	Start	End	Length	Cov(%)
sp\|Q2QUJ4_ORYSJ	340	1050	1050	67.71

AtOs (Arabidopsis thaliana & Oryza sativa)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca14323.1	39	113	594	5.38	75	43	9e-13
Target_name	Start	End	Length	Cov(%)
Os11t0656500-01	628	703	1401	5.42

Coding region

seqname	source	feature	start	end	score	strand	frame	group
scaffold1678	Augustus	mRNA	34774	37746	.	+	.	ID=Dca14323.1;Parent=Dca14323
scaffold1678	Augustus	exon	34774	34880	.	+	.	ID=Dca14323.1.exon1;Parent=Dca14323.1
scaffold1678	Augustus	exon	35640	35864	.	+	.	ID=Dca14323.1.exon2;Parent=Dca14323.1
scaffold1678	Augustus	exon	35971	36592	.	+	.	ID=Dca14323.1.exon3;Parent=Dca14323.1
scaffold1678	Augustus	exon	36843	37344	.	+	.	ID=Dca14323.1.exon4;Parent=Dca14323.1
scaffold1678	Augustus	exon	37418	37746	.	+	.	ID=Dca14323.1.exon5;Parent=Dca14323.1