Carnation DB

Dca1523.1

Annotation

5-exons
f-1
sp|F4NCG1_BETVU#Putative uncharacterized protein#Beta vulgaris subsp vulgaris#unknown#GO:0003723;GO:0003964;GO:0006278#2F1P0C
Os06t0484800-00 Reverse transcriptase domain containing protein.
Repeat List (scaffold1046)

Sequences

Blastp Summary

Trem (Uniprot-tremble)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca1523.1	2	162	307	28.01	161	54	6e-46
Target_name	Start	End	Length	Cov(%)
sp\|F4NCG1_BETVU	573	733	1110	14.5

AtOs (Arabidopsis thaliana & Oryza sativa)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca1523.1	9	159	307	18.24	151	37	2e-19
Target_name	Start	End	Length	Cov(%)
Os06t0484800-00	491	642	857	17.73

Coding region

seqname	source	feature	start	end	score	strand	frame	group
scaffold1046	Augustus	mRNA	80699	85266	.	+	.	ID=Dca1523.1;Parent=Dca1523
scaffold1046	Augustus	exon	80699	81233	.	+	.	ID=Dca1523.1.exon1;Parent=Dca1523.1
scaffold1046	Augustus	exon	81770	81857	.	+	.	ID=Dca1523.1.exon2;Parent=Dca1523.1
scaffold1046	Augustus	exon	82003	82184	.	+	.	ID=Dca1523.1.exon3;Parent=Dca1523.1
scaffold1046	Augustus	exon	84518	84599	.	+	.	ID=Dca1523.1.exon4;Parent=Dca1523.1
scaffold1046	Augustus	exon	85230	85266	.	+	.	ID=Dca1523.1.exon5;Parent=Dca1523.1