Dca16009.1
Annotation
- 3-exons
- f-1
- sp|Q2QRM1_ORYSJ#Retrotransposon protein, putative, Ty1-copia subclass#Oryza sativa subsp japonica (Rice)#ORFNames=LOC_Os12g27096#GO:0003676;GO:0008270;GO:0015074#2F1P0C
- Repeat List (scaffold17872)
Sequences
Blastp Summary
Trem (Uniprot-tremble)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca16009.1 |
10 |
349 |
351 |
60.11 |
340 |
54 |
6e-111
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| sp|Q2QRM1_ORYSJ |
1351 |
1745 |
1745 |
22.63 |
AtOs (Arabidopsis thaliana & Oryza sativa)
No data
Coding region
| seqname |
source |
feature |
start |
end |
score |
strand |
frame |
group |
| scaffold17872 |
Augustus |
mRNA |
771 |
2151 |
. |
+ |
. |
ID=Dca16009.1;Parent=Dca16009 |
| scaffold17872 |
Augustus |
exon |
771 |
1013 |
. |
+ |
. |
ID=Dca16009.1.exon1;Parent=Dca16009.1 |
| scaffold17872 |
Augustus |
exon |
1219 |
1740 |
. |
+ |
. |
ID=Dca16009.1.exon2;Parent=Dca16009.1 |
| scaffold17872 |
Augustus |
exon |
1861 |
2151 |
. |
+ |
. |
ID=Dca16009.1.exon3;Parent=Dca16009.1 |
