Dca16104.1
Annotation
- 3-exons
- f-1
- sp|Q2R1A9_ORYSJ#Retrotransposon protein, putative, Ty3-gypsy subclass#Oryza sativa subsp japonica (Rice)#ORFNames=LOC_Os11g39790#GO:0004190;GO:0003723;GO:0003964;GO:0008270;GO:0015074;GO:0006508;GO:0006278#4F3P0C
- Repeat List (scaffold17922)
Sequences
Blastp Summary
Trem (Uniprot-tremble)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca16104.1 |
2 |
225 |
258 |
54.26 |
224 |
63 |
2e-73
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| sp|Q2R1A9_ORYSJ |
946 |
1155 |
1784 |
11.77 |
AtOs (Arabidopsis thaliana & Oryza sativa)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca16104.1 |
2 |
219 |
258 |
37.59 |
218 |
41 |
4e-46
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| Os12t0142900-02 |
300 |
540 |
707 |
34.08 |
Coding region
| seqname |
source |
feature |
start |
end |
score |
strand |
frame |
group |
| scaffold17922 |
Augustus |
mRNA |
837 |
3409 |
. |
+ |
. |
ID=Dca16104.1;Parent=Dca16104 |
| scaffold17922 |
Augustus |
exon |
837 |
1233 |
. |
+ |
. |
ID=Dca16104.1.exon1;Parent=Dca16104.1 |
| scaffold17922 |
Augustus |
exon |
1302 |
1579 |
. |
+ |
. |
ID=Dca16104.1.exon2;Parent=Dca16104.1 |
| scaffold17922 |
Augustus |
exon |
3308 |
3409 |
. |
+ |
. |
ID=Dca16104.1.exon3;Parent=Dca16104.1 |
