Dca16124.1
Annotation
- 2-exons
- f-3
- sp|Q2QRM1_ORYSJ#Retrotransposon protein, putative, Ty1-copia subclass#Oryza sativa subsp japonica (Rice)#ORFNames=LOC_Os12g27096#GO:0003676;GO:0008270;GO:0015074#2F1P0C
- Repeat List (scaffold1794)
Sequences
Blastp Summary
Trem (Uniprot-tremble)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca16124.1 |
16 |
361 |
361 |
58.17 |
346 |
60 |
3e-119
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| sp|Q2QRM1_ORYSJ |
1251 |
1603 |
1745 |
20.22 |
AtOs (Arabidopsis thaliana & Oryza sativa)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca16124.1 |
14 |
361 |
361 |
35.18 |
348 |
34 |
3e-52
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| Os08t0125300-01 |
889 |
1247 |
1428 |
25.14 |
Coding region
| seqname |
source |
feature |
start |
end |
score |
strand |
frame |
group |
| scaffold1794 |
Augustus |
mRNA |
1061 |
2235 |
. |
+ |
. |
ID=Dca16124.1;Parent=Dca16124 |
| scaffold1794 |
Augustus |
exon |
1061 |
1623 |
. |
+ |
. |
ID=Dca16124.1.exon1;Parent=Dca16124.1 |
| scaffold1794 |
Augustus |
exon |
1711 |
2235 |
. |
+ |
. |
ID=Dca16124.1.exon2;Parent=Dca16124.1 |
