Dca16171.1
Annotation
- 3-exons
- f-1
- sp|E2DN01_BETVU#Putative uncharacterized protein#Beta vulgaris (Sugar beet)#unknown#GO:0003723;GO:0003964;GO:0008270;GO:0015074;GO:0006278#3F2P0C
- sp|Q9FZN9_ARATH#Retroelement pol polyprotein-like#Arabidopsis thaliana (Mouse-ear cress)#unknown#GO:0003723;GO:0003964;GO:0015074;GO:0006278#2F2P0C
- Repeat List (scaffold1799)
Sequences
Blastp Summary
Trem (Uniprot-tremble)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca16171.1 |
1 |
161 |
866 |
6.92 |
161 |
37 |
3e-24
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| sp|E2DN01_BETVU |
84 |
244 |
1717 |
9.37 |
AtOs (Arabidopsis thaliana & Oryza sativa)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca16171.1 |
576 |
650 |
866 |
3.11 |
75 |
36 |
2e-08
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| Os09t0122300-01 |
77 |
150 |
150 |
49.33 |
Coding region
| seqname |
source |
feature |
start |
end |
score |
strand |
frame |
group |
| scaffold1799 |
Augustus |
mRNA |
16122 |
18865 |
. |
+ |
. |
ID=Dca16171.1;Parent=Dca16171 |
| scaffold1799 |
Augustus |
exon |
16122 |
16551 |
. |
+ |
. |
ID=Dca16171.1.exon1;Parent=Dca16171.1 |
| scaffold1799 |
Augustus |
exon |
16632 |
18170 |
. |
+ |
. |
ID=Dca16171.1.exon2;Parent=Dca16171.1 |
| scaffold1799 |
Augustus |
exon |
18234 |
18865 |
. |
+ |
. |
ID=Dca16171.1.exon3;Parent=Dca16171.1 |
