Dca16216.1
Annotation
- 4-exons
- f-1
- sp|B9N295_POPTR#Predicted protein#Populus trichocarpa (Western balsam poplar) (Populus balsamifera subsp trichocarpa)#ORFNames=POPTRDRAFT_783911#GO:0005634;GO:0003677#1F0P1C
- Os01t0780800-01 SAND domain containing protein.
- Repeat List (scaffold18)
Sequences
Blastp Summary
Trem (Uniprot-tremble)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca16216.1 |
174 |
399 |
423 |
24.58 |
226 |
47 |
5e-57
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| sp|B9N295_POPTR |
12 |
235 |
235 |
95.31 |
AtOs (Arabidopsis thaliana & Oryza sativa)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca16216.1 |
174 |
397 |
423 |
24.34 |
224 |
46 |
3e-55
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| Os01t0780800-01 |
12 |
233 |
236 |
94.06 |
Coding region
| seqname |
source |
feature |
start |
end |
score |
strand |
frame |
group |
| scaffold18 |
Augus-PASA |
mRNA |
256827 |
261795 |
. |
- |
. |
ID=Dca16216.1;Parent=Dca16216 |
| scaffold18 |
Augus-PASA |
exon |
256827 |
257073 |
. |
- |
. |
ID=Dca16216.1.exon1;Parent=Dca16216.1 |
| scaffold18 |
Augus-PASA |
exon |
257171 |
257501 |
. |
- |
. |
ID=Dca16216.1.exon2;Parent=Dca16216.1 |
| scaffold18 |
Augustus |
exon |
259460 |
260080 |
. |
- |
. |
ID=Dca16216.1.exon3;Parent=Dca16216.1 |
| scaffold18 |
Augustus |
exon |
261723 |
261795 |
. |
- |
. |
ID=Dca16216.1.exon4;Parent=Dca16216.1 |
