Carnation DB

Dca16219.1

Annotation

19-exons
f-1
sp|B9GRP4_POPTR#Predicted protein#Populus trichocarpa (Western balsam poplar) (Populus balsamifera subsp trichocarpa)#ORFNames=POPTRDRAFT_830072#GO:0008250;GO:0004579;GO:0018279#1F1P1C
AT4G21150.1 | Symbols: HAP6 | ribophorin II (RPN2) family protein | chr4:11278646-11283599 FORWARD LENGTH=691
Repeat List (scaffold18)

Sequences

Blastp Summary

Trem (Uniprot-tremble)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca16219.1	6	702	703	62.16	697	63	0
Target_name	Start	End	Length	Cov(%)
sp\|B9GRP4_POPTR	7	693	694	98.99

AtOs (Arabidopsis thaliana & Oryza sativa)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca16219.1	7	702	703	57.18	696	58	0
Target_name	Start	End	Length	Cov(%)
AT4G21150.1	9	690	691	98.69

Coding region

seqname	source	feature	start	end	score	strand	frame	group
scaffold18	Augustus	mRNA	279407	286536	.	+	.	ID=Dca16219.1;Parent=Dca16219
scaffold18	Augustus	exon	279407	279543	.	+	.	ID=Dca16219.1.exon1;Parent=Dca16219.1
scaffold18	Augustus	exon	280321	280510	.	+	.	ID=Dca16219.1.exon2;Parent=Dca16219.1
scaffold18	Augustus	exon	280677	280766	.	+	.	ID=Dca16219.1.exon3;Parent=Dca16219.1
scaffold18	Augustus	exon	280854	280958	.	+	.	ID=Dca16219.1.exon4;Parent=Dca16219.1
scaffold18	Augustus	exon	281078	281147	.	+	.	ID=Dca16219.1.exon5;Parent=Dca16219.1
scaffold18	Augustus	exon	281362	281426	.	+	.	ID=Dca16219.1.exon6;Parent=Dca16219.1
scaffold18	Augus-PASA	exon	281940	281994	.	+	.	ID=Dca16219.1.exon7;Parent=Dca16219.1
scaffold18	Augus-PASA	exon	282449	282576	.	+	.	ID=Dca16219.1.exon8;Parent=Dca16219.1
scaffold18	Augus-PASA	exon	282713	282828	.	+	.	ID=Dca16219.1.exon9;Parent=Dca16219.1
scaffold18	Augus-PASA	exon	283487	283556	.	+	.	ID=Dca16219.1.exon10;Parent=Dca16219.1
scaffold18	Augus-PASA	exon	283916	284020	.	+	.	ID=Dca16219.1.exon11;Parent=Dca16219.1
scaffold18	Augus-PASA	exon	284110	284199	.	+	.	ID=Dca16219.1.exon12;Parent=Dca16219.1
scaffold18	Augus-PASA	exon	284287	284435	.	+	.	ID=Dca16219.1.exon13;Parent=Dca16219.1
scaffold18	Augus-PASA	exon	284805	284916	.	+	.	ID=Dca16219.1.exon14;Parent=Dca16219.1
scaffold18	Augus-PASA	exon	284987	285070	.	+	.	ID=Dca16219.1.exon15;Parent=Dca16219.1
scaffold18	Augus-PASA	exon	285362	285442	.	+	.	ID=Dca16219.1.exon16;Parent=Dca16219.1
scaffold18	Augus-PASA	exon	285533	285757	.	+	.	ID=Dca16219.1.exon17;Parent=Dca16219.1
scaffold18	Augus-PASA	exon	285980	286102	.	+	.	ID=Dca16219.1.exon18;Parent=Dca16219.1
scaffold18	Augus-PASA	exon	286420	286536	.	+	.	ID=Dca16219.1.exon19;Parent=Dca16219.1