Dca16260.1
Annotation
- 4-exons
- f-1
- sp|D7SPZ2_VITVI#Putative uncharacterized protein#Vitis vinifera (Grape)#OrderedLocusNames=VIT_13s0019g00700#unknown#0F0P0C
- AT3G07530.1 | Symbols: | CONTAINS InterPro DOMAIN/s: Beta-Casp domain (InterPro:IPR022712); BEST Arabidopsis thaliana protein match is: cleavage and polyadenylation specificity factor 73 kDa subunit-II (TAIR:AT2G01730.1); Has 624 Blast hits to 615 proteins in 160 species: Archae - 54; Bacteria - 6; Metazoa - 333; Fungi - 44; Plants - 93; Viruses - 0; Other Eukaryotes - 94 (source: NCBI BLink). | chr3:2400793-2404280 FORWARD LENGTH=699
- Repeat List (scaffold180)
Sequences
Blastp Summary
Trem (Uniprot-tremble)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca16260.1 |
19 |
303 |
321 |
46.1 |
285 |
52 |
4e-86
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| sp|D7SPZ2_VITVI |
85 |
360 |
774 |
35.65 |
AtOs (Arabidopsis thaliana & Oryza sativa)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca16260.1 |
19 |
305 |
321 |
40.8 |
287 |
45 |
6e-74
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| AT3G07530.1 |
4 |
287 |
699 |
40.62 |
Coding region
| seqname |
source |
feature |
start |
end |
score |
strand |
frame |
group |
| scaffold180 |
Augustus |
mRNA |
113318 |
114959 |
. |
- |
. |
ID=Dca16260.1;Parent=Dca16260 |
| scaffold180 |
Augustus |
exon |
113318 |
113627 |
. |
- |
. |
ID=Dca16260.1.exon1;Parent=Dca16260.1 |
| scaffold180 |
Augustus |
exon |
114154 |
114368 |
. |
- |
. |
ID=Dca16260.1.exon2;Parent=Dca16260.1 |
| scaffold180 |
Augustus |
exon |
114448 |
114851 |
. |
- |
. |
ID=Dca16260.1.exon3;Parent=Dca16260.1 |
| scaffold180 |
Augustus |
exon |
114923 |
114959 |
. |
- |
. |
ID=Dca16260.1.exon4;Parent=Dca16260.1 |
