Dca16383.1
Annotation
- 2-exons
- f-1
- sp|Q2QSG2_ORYSJ#Retrotransposon protein, putative, Ty1-copia subclass#Oryza sativa subsp japonica (Rice)#ORFNames=LOC_Os12g24220#GO:0003676;GO:0015074#1F1P0C
- Repeat List (scaffold1809)
Sequences
Blastp Summary
Trem (Uniprot-tremble)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca16383.1 |
1 |
527 |
527 |
54.83 |
527 |
46 |
1e-139
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| sp|Q2QSG2_ORYSJ |
776 |
1407 |
1597 |
39.57 |
AtOs (Arabidopsis thaliana & Oryza sativa)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca16383.1 |
17 |
527 |
527 |
33.77 |
511 |
32 |
5e-73
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| Os11t0656500-01 |
660 |
1213 |
1401 |
39.54 |
Coding region
| seqname |
source |
feature |
start |
end |
score |
strand |
frame |
group |
| scaffold1809 |
Augustus |
mRNA |
10614 |
12344 |
. |
+ |
. |
ID=Dca16383.1;Parent=Dca16383 |
| scaffold1809 |
Augustus |
exon |
10614 |
11380 |
. |
+ |
. |
ID=Dca16383.1.exon1;Parent=Dca16383.1 |
| scaffold1809 |
Augustus |
exon |
11528 |
12344 |
. |
+ |
. |
ID=Dca16383.1.exon2;Parent=Dca16383.1 |
