Dca16488.1
Annotation
- 4-exons
- f-3
- sp|Q2QWB6_ORYSJ#Retrotransposon protein, putative, Ty1-copia subclass#Oryza sativa subsp japonica (Rice)#ORFNames=LOC_Os12g09910#GO:0003676;GO:0008270#2F0P0C
- Repeat List (scaffold18158)
Sequences
Blastp Summary
Trem (Uniprot-tremble)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca16488.1 |
14 |
261 |
280 |
39.28 |
248 |
41 |
2e-50
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| sp|Q2QWB6_ORYSJ |
56 |
325 |
325 |
83.07 |
AtOs (Arabidopsis thaliana & Oryza sativa)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca16488.1 |
123 |
264 |
280 |
18.21 |
142 |
36 |
1e-18
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| Os11t0656500-01 |
1241 |
1382 |
1401 |
10.13 |
Coding region
| seqname |
source |
feature |
start |
end |
score |
strand |
frame |
group |
| scaffold18158 |
Augustus |
mRNA |
1 |
3338 |
. |
+ |
. |
ID=Dca16488.1;Parent=Dca16488 |
| scaffold18158 |
Augustus |
exon |
1 |
161 |
. |
+ |
. |
ID=Dca16488.1.exon1;Parent=Dca16488.1 |
| scaffold18158 |
Augustus |
exon |
279 |
435 |
. |
+ |
. |
ID=Dca16488.1.exon2;Parent=Dca16488.1 |
| scaffold18158 |
Augustus |
exon |
755 |
859 |
. |
+ |
. |
ID=Dca16488.1.exon3;Parent=Dca16488.1 |
| scaffold18158 |
Augustus |
exon |
2917 |
3338 |
. |
+ |
. |
ID=Dca16488.1.exon4;Parent=Dca16488.1 |
