Dca17587.1
Annotation
- 4-exons
- f-1
- sp|D9ILX2_BRACM#Exo-polygalacturonase#Brassica rapa subsp campestris#Name=MF16#GO:0005576;GO:0047911;GO:0004650;GO:0005975;GO:0007047#2F2P1C
- Repeat List (scaffold19)
Sequences
Blastp Summary
Trem (Uniprot-tremble)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca17587.1 |
26 |
392 |
398 |
53.01 |
367 |
57 |
3e-119
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| sp|D9ILX2_BRACM |
100 |
468 |
476 |
77.52 |
AtOs (Arabidopsis thaliana & Oryza sativa)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca17587.1 |
26 |
392 |
398 |
52.51 |
367 |
57 |
1e-116
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| AT3G14040.1 |
71 |
437 |
445 |
82.47 |
Coding region
| seqname |
source |
feature |
start |
end |
score |
strand |
frame |
group |
| scaffold19 |
Augustus |
mRNA |
20666 |
22867 |
. |
+ |
. |
ID=Dca17587.1;Parent=Dca17587 |
| scaffold19 |
Augustus |
exon |
20666 |
20788 |
. |
+ |
. |
ID=Dca17587.1.exon1;Parent=Dca17587.1 |
| scaffold19 |
Augustus |
exon |
21486 |
21806 |
. |
+ |
. |
ID=Dca17587.1.exon2;Parent=Dca17587.1 |
| scaffold19 |
Augustus |
exon |
21920 |
22435 |
. |
+ |
. |
ID=Dca17587.1.exon3;Parent=Dca17587.1 |
| scaffold19 |
Augustus |
exon |
22631 |
22867 |
. |
+ |
. |
ID=Dca17587.1.exon4;Parent=Dca17587.1 |
