Dca17859.1
Annotation
- 3-exons
- f-1
- sp|H2KWP6_ORYSJ#Retrotransposon protein, putative, Ty1-copia subclass#Oryza sativa subsp japonica (Rice)#ORFNames=LOC_Os12g25734#unknown#0F0P0C
- Repeat List (scaffold19133)
Sequences
Blastp Summary
Trem (Uniprot-tremble)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca17859.1 |
13 |
510 |
520 |
56.34 |
498 |
48 |
8e-144
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| sp|H2KWP6_ORYSJ |
254 |
872 |
932 |
66.41 |
AtOs (Arabidopsis thaliana & Oryza sativa)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca17859.1 |
208 |
261 |
520 |
5.57 |
54 |
54 |
2e-09
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| Os11t0656500-01 |
904 |
957 |
1401 |
3.85 |
Coding region
| seqname |
source |
feature |
start |
end |
score |
strand |
frame |
group |
| scaffold19133 |
Augustus |
mRNA |
762 |
2802 |
. |
- |
. |
ID=Dca17859.1;Parent=Dca17859 |
| scaffold19133 |
Augustus |
exon |
762 |
1543 |
. |
- |
. |
ID=Dca17859.1.exon1;Parent=Dca17859.1 |
| scaffold19133 |
Augustus |
exon |
1943 |
2104 |
. |
- |
. |
ID=Dca17859.1.exon2;Parent=Dca17859.1 |
| scaffold19133 |
Augustus |
exon |
2184 |
2802 |
. |
- |
. |
ID=Dca17859.1.exon3;Parent=Dca17859.1 |
