Carnation DB

Dca1819.1

Annotation

5-exons
f-1
sp|B9I6L9_POPTR#Predicted protein#Populus trichocarpa (Western balsam poplar) (Populus balsamifera subsp trichocarpa)#ORFNames=POPTRDRAFT_570664#unknown#0F0P0C
Os05t0135900-01 Spectrin repeat containing protein.
Repeat List (scaffold1059)

Sequences

Blastp Summary

Trem (Uniprot-tremble)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca1819.1	8	346	346	70.23	339	72	2e-132
Target_name	Start	End	Length	Cov(%)
sp\|B9I6L9_POPTR	5	344	344	98.83

AtOs (Arabidopsis thaliana & Oryza sativa)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca1819.1	13	346	346	60.11	334	63	3e-116
Target_name	Start	End	Length	Cov(%)
AT5G26770.2	2	335	335	99.7

Coding region

seqname	source	feature	start	end	score	strand	frame	group
scaffold1059	Augus-PASA	mRNA	83175	87098	.	-	.	ID=Dca1819.1;Parent=Dca1819
scaffold1059	Augus-PASA	exon	83175	83342	.	-	.	ID=Dca1819.1.exon1;Parent=Dca1819.1
scaffold1059	Augus-PASA	exon	83469	83570	.	-	.	ID=Dca1819.1.exon2;Parent=Dca1819.1
scaffold1059	Augus-PASA	exon	83684	84145	.	-	.	ID=Dca1819.1.exon3;Parent=Dca1819.1
scaffold1059	Augus-PASA	exon	86189	86296	.	-	.	ID=Dca1819.1.exon4;Parent=Dca1819.1
scaffold1059	Augus-PASA	exon	86898	87098	.	-	.	ID=Dca1819.1.exon5;Parent=Dca1819.1