Carnation DB

Dca19442.1

Annotation

8-exons
f-1
sp|B9IGK0_POPTR#Predicted protein#Populus trichocarpa (Western balsam poplar) (Populus balsamifera subsp trichocarpa)#ORFNames=POPTRDRAFT_577085#unknown#0F0P0C
AT5G01660.1 | Symbols: | CONTAINS InterPro DOMAIN/s: Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch repeat type 1 (InterPro:IPR006652), Development/cell death domain (InterPro:IPR013989), Kelch related (InterPro:IPR013089), Kelch-type beta propeller (InterPro:IPR015915); BEST Arabidopsis thaliana protein match is: DCD (Development and Cell Death) domain protein (TAIR:AT3G11000.1); Has 16133 Blast hits to 7053 proteins in 482 species: Archae - 40; Bacteria - 1227; Metazoa - 10756; Fungi - 311; Plants - 1896; Viruses - 673; Other Eukaryotes - 1230 (source: NCBI BLink). | chr5:244504-248442 REVERSE LENGTH=656
Repeat List (scaffold2010)

Trem (Uniprot-tremble)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca19442.1	75	496	496	41.33	422	48	3e-113
Target_name	Start	End	Length	Cov(%)
sp\|B9IGK0_POPTR	236	656	657	64.07

AtOs (Arabidopsis thaliana & Oryza sativa)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca19442.1	62	496	496	37.09	435	42	1e-92
Target_name	Start	End	Length	Cov(%)
AT5G01660.1	210	655	656	67.98

seqname	source	feature	start	end	score	strand	frame	group
scaffold2010	Augustus	mRNA	45812	50348	.	-	.	ID=Dca19442.1;Parent=Dca19442
scaffold2010	Augustus	exon	45812	45898	.	-	.	ID=Dca19442.1.exon1;Parent=Dca19442.1
scaffold2010	Augustus	exon	46014	46200	.	-	.	ID=Dca19442.1.exon2;Parent=Dca19442.1
scaffold2010	Augustus	exon	46383	46484	.	-	.	ID=Dca19442.1.exon3;Parent=Dca19442.1
scaffold2010	Augustus	exon	47251	47327	.	-	.	ID=Dca19442.1.exon4;Parent=Dca19442.1
scaffold2010	Augustus	exon	48050	48249	.	-	.	ID=Dca19442.1.exon5;Parent=Dca19442.1
scaffold2010	Augustus	exon	48326	48644	.	-	.	ID=Dca19442.1.exon6;Parent=Dca19442.1
scaffold2010	Augustus	exon	49746	49823	.	-	.	ID=Dca19442.1.exon7;Parent=Dca19442.1
scaffold2010	Augustus	exon	49908	50348	.	-	.	ID=Dca19442.1.exon8;Parent=Dca19442.1