Carnation DB

Dca19556.1

Annotation

16-exons
f-1
sp|B9I9F7_POPTR#Predicted protein#Populus trichocarpa (Western balsam poplar) (Populus balsamifera subsp trichocarpa)#ORFNames=POPTRDRAFT_807470#GO:0003677;GO:0006355#1F1P0C
sp|B9RN98_RICCO#DNA methyltransferase 1-associated protein, putative#Ricinus communis (Castor bean)#ORFNames=RCOM_1345900#GO:0005634;GO:0003677;GO:0008168;GO:0045892#2F1P1C
Repeat List (scaffold202)

Sequences

Blastp Summary

Trem (Uniprot-tremble)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca19556.1	1	432	435	71.26	432	70	1e-178
Target_name	Start	End	Length	Cov(%)
sp\|B9I9F7_POPTR	1	439	443	99.09

AtOs (Arabidopsis thaliana & Oryza sativa)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca19556.1	2	432	435	65.74	431	65	4e-160
Target_name	Start	End	Length	Cov(%)
AT2G47210.1	5	437	441	98.18

Coding region

seqname	source	feature	start	end	score	strand	frame	group
scaffold202	Augus-PASA	mRNA	123543	127391	.	+	.	ID=Dca19556.1;Parent=Dca19556
scaffold202	Augus-PASA	exon	123543	123656	.	+	.	ID=Dca19556.1.exon1;Parent=Dca19556.1
scaffold202	Augus-PASA	exon	123729	123815	.	+	.	ID=Dca19556.1.exon2;Parent=Dca19556.1
scaffold202	Augus-PASA	exon	123914	123979	.	+	.	ID=Dca19556.1.exon3;Parent=Dca19556.1
scaffold202	Augus-PASA	exon	124066	124125	.	+	.	ID=Dca19556.1.exon4;Parent=Dca19556.1
scaffold202	Augus-PASA	exon	124238	124294	.	+	.	ID=Dca19556.1.exon5;Parent=Dca19556.1
scaffold202	Augus-PASA	exon	124485	124614	.	+	.	ID=Dca19556.1.exon6;Parent=Dca19556.1
scaffold202	Augus-PASA	exon	124706	124773	.	+	.	ID=Dca19556.1.exon7;Parent=Dca19556.1
scaffold202	Augus-PASA	exon	124865	124957	.	+	.	ID=Dca19556.1.exon8;Parent=Dca19556.1
scaffold202	Augus-PASA	exon	125047	125094	.	+	.	ID=Dca19556.1.exon9;Parent=Dca19556.1
scaffold202	Augus-PASA	exon	125691	125834	.	+	.	ID=Dca19556.1.exon10;Parent=Dca19556.1
scaffold202	Augus-PASA	exon	126127	126237	.	+	.	ID=Dca19556.1.exon11;Parent=Dca19556.1
scaffold202	Augus-PASA	exon	126480	126575	.	+	.	ID=Dca19556.1.exon12;Parent=Dca19556.1
scaffold202	Augus-PASA	exon	126657	126728	.	+	.	ID=Dca19556.1.exon13;Parent=Dca19556.1
scaffold202	Augus-PASA	exon	127026	127077	.	+	.	ID=Dca19556.1.exon14;Parent=Dca19556.1
scaffold202	Augus-PASA	exon	127190	127224	.	+	.	ID=Dca19556.1.exon15;Parent=Dca19556.1
scaffold202	Augus-PASA	exon	127317	127391	.	+	.	ID=Dca19556.1.exon16;Parent=Dca19556.1