Carnation DB

Dca2000.1

Annotation

5-exons
f-1
sp|B9MU81_POPTR#Predicted protein#Populus trichocarpa (Western balsam poplar) (Populus balsamifera subsp trichocarpa)#ORFNames=POPTRDRAFT_836353#GO:0005634;GO:0003677;GO:0006351#1F1P1C
Os01t0147200-01 IWS1, C-terminal family protein.
Repeat List (scaffold1065)

Sequences

Blastp Summary

Trem (Uniprot-tremble)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca2000.1	28	199	252	40.07	172	59	3e-51
Target_name	Start	End	Length	Cov(%)
sp\|B9MU81_POPTR	64	234	349	48.99

AtOs (Arabidopsis thaliana & Oryza sativa)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca2000.1	48	203	252	39.68	156	65	5e-51
Target_name	Start	End	Length	Cov(%)
Os01t0147200-01	268	421	534	28.83

Coding region

seqname	source	feature	start	end	score	strand	frame	group
scaffold1065	Augustus	mRNA	58179	61683	.	+	.	ID=Dca2000.1;Parent=Dca2000
scaffold1065	Augustus	exon	58179	58223	.	+	.	ID=Dca2000.1.exon1;Parent=Dca2000.1
scaffold1065	Augustus	exon	58445	58798	.	+	.	ID=Dca2000.1.exon2;Parent=Dca2000.1
scaffold1065	Augustus	exon	58940	59080	.	+	.	ID=Dca2000.1.exon3;Parent=Dca2000.1
scaffold1065	Augustus	exon	59177	59250	.	+	.	ID=Dca2000.1.exon4;Parent=Dca2000.1
scaffold1065	Augustus	exon	61539	61683	.	+	.	ID=Dca2000.1.exon5;Parent=Dca2000.1