Dca20345.1
Annotation
- 2-exons
- f-1
- sp|Q2R8S5_ORYSJ#Retrotransposon protein, putative, Ty3-gypsy subclass#Oryza sativa subsp japonica (Rice)#ORFNames=LOC_Os11g11170#GO:0003676;GO:0008270#2F0P0C
- Repeat List (scaffold20833)
Sequences
Blastp Summary
Trem (Uniprot-tremble)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca20345.1 |
8 |
696 |
703 |
47.36 |
689 |
49 |
1e-179
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| sp|Q2R8S5_ORYSJ |
486 |
1134 |
1529 |
42.44 |
AtOs (Arabidopsis thaliana & Oryza sativa)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca20345.1 |
350 |
624 |
703 |
16.92 |
275 |
44 |
9e-61
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| Os04t0191000-01 |
723 |
996 |
1539 |
17.8 |
Coding region
| seqname |
source |
feature |
start |
end |
score |
strand |
frame |
group |
| scaffold20833 |
Augustus |
mRNA |
1 |
2343 |
. |
- |
. |
ID=Dca20345.1;Parent=Dca20345 |
| scaffold20833 |
Augustus |
exon |
1 |
1054 |
. |
- |
. |
ID=Dca20345.1.exon1;Parent=Dca20345.1 |
| scaffold20833 |
Augustus |
exon |
1288 |
2343 |
. |
- |
. |
ID=Dca20345.1.exon2;Parent=Dca20345.1 |
