Dca22363.1
Annotation
- 3-exons
- f-1
- sp|Q10JY5_ORYSJ#Retrotransposon protein, putative, Ty1-copia subclass#Oryza sativa subsp japonica (Rice)#ORFNames=LOC_Os03g29035#GO:0003676;GO:0008270;GO:0015074#2F1P0C
- Repeat List (scaffold2243)
Sequences
Blastp Summary
Trem (Uniprot-tremble)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca22363.1 |
72 |
362 |
363 |
30.57 |
291 |
37 |
1e-41
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| sp|Q10JY5_ORYSJ |
165 |
424 |
767 |
33.89 |
AtOs (Arabidopsis thaliana & Oryza sativa)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca22363.1 |
294 |
362 |
363 |
7.71 |
69 |
41 |
1e-08
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| Os02t0671800-01 |
452 |
519 |
573 |
11.86 |
Coding region
| seqname |
source |
feature |
start |
end |
score |
strand |
frame |
group |
| scaffold2243 |
Augustus |
mRNA |
44924 |
46935 |
. |
- |
. |
ID=Dca22363.1;Parent=Dca22363 |
| scaffold2243 |
Augustus |
exon |
44924 |
45147 |
. |
- |
. |
ID=Dca22363.1.exon1;Parent=Dca22363.1 |
| scaffold2243 |
Augustus |
exon |
46014 |
46718 |
. |
- |
. |
ID=Dca22363.1.exon2;Parent=Dca22363.1 |
| scaffold2243 |
Augustus |
exon |
46773 |
46935 |
. |
- |
. |
ID=Dca22363.1.exon3;Parent=Dca22363.1 |
