Carnation DB

Dca25550.1

Annotation

10-exons
f-1
sp|F6HIC3_VITVI#Putative uncharacterized protein#Vitis vinifera (Grape)#OrderedLocusNames=VIT_12s0059g00800#GO:0005524;GO:0003677;GO:0004386;GO:0008270#4F0P0C
sp|B9SFQ7_RICCO#DNA repair helicase rad5,16, putative#Ricinus communis (Castor bean)#ORFNames=RCOM_1224050#GO:0005524;GO:0003677;GO:0004386;GO:0016740;GO:0008270#5F0P0C
Repeat List (scaffold2535)

Sequences

Blastp Summary

Trem (Uniprot-tremble)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca25550.1	1	368	368	79.89	368	80	7e-177
Target_name	Start	End	Length	Cov(%)
sp\|F6HIC3_VITVI	569	936	936	39.31

AtOs (Arabidopsis thaliana & Oryza sativa)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca25550.1	1	368	368	72.55	368	73	1e-164
Target_name	Start	End	Length	Cov(%)
AT1G05120.1	467	833	833	44.05

Coding region

seqname	source	feature	start	end	score	strand	frame	group
scaffold2535	Augus-PASA	mRNA	25079	28628	.	-	.	ID=Dca25550.1;Parent=Dca25550
scaffold2535	Augus-PASA	exon	25079	25151	.	-	.	ID=Dca25550.1.exon1;Parent=Dca25550.1
scaffold2535	Augus-PASA	exon	25242	25322	.	-	.	ID=Dca25550.1.exon2;Parent=Dca25550.1
scaffold2535	Augus-PASA	exon	25398	25486	.	-	.	ID=Dca25550.1.exon3;Parent=Dca25550.1
scaffold2535	Augus-PASA	exon	25617	25769	.	-	.	ID=Dca25550.1.exon4;Parent=Dca25550.1
scaffold2535	Augus-PASA	exon	25878	25982	.	-	.	ID=Dca25550.1.exon5;Parent=Dca25550.1
scaffold2535	Augus-PASA	exon	26520	26750	.	-	.	ID=Dca25550.1.exon6;Parent=Dca25550.1
scaffold2535	Augustus	exon	27010	27135	.	-	.	ID=Dca25550.1.exon7;Parent=Dca25550.1
scaffold2535	Augustus	exon	27704	27773	.	-	.	ID=Dca25550.1.exon8;Parent=Dca25550.1
scaffold2535	Augustus	exon	28365	28450	.	-	.	ID=Dca25550.1.exon9;Parent=Dca25550.1
scaffold2535	Augustus	exon	28536	28628	.	-	.	ID=Dca25550.1.exon10;Parent=Dca25550.1