Carnation DB

Dca30340.1

Annotation

11-exons
f-1
sp|F6H428_VITVI#Putative uncharacterized protein#Vitis vinifera (Grape)#OrderedLocusNames=VIT_14s0068g01090#GO:0005694;GO:0005634;GO:0042393;GO:0008270#2F0P2C
sp|B9GNG0_POPTR#SET domain protein#Populus trichocarpa (Western balsam poplar) (Populus balsamifera subsp trichocarpa)#Name=SDG939#GO:0005694;GO:0005634;GO:0042393;GO:0018024;GO:0008270#3F0P2C
Repeat List (scaffold3028)

Sequences

Blastp Summary

Trem (Uniprot-tremble)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca30340.1	119	546	546	56.41	428	67	0
Target_name	Start	End	Length	Cov(%)
sp\|F6H428_VITVI	74	525	525	86.09

AtOs (Arabidopsis thaliana & Oryza sativa)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca30340.1	141	546	546	47.8	406	60	3e-159
Target_name	Start	End	Length	Cov(%)
AT5G13960.1	185	624	624	70.51

Coding region

seqname	source	feature	start	end	score	strand	frame	group
scaffold3028	Augustus	mRNA	20294	26908	.	+	.	ID=Dca30340.1;Parent=Dca30340
scaffold3028	Augustus	exon	20294	20680	.	+	.	ID=Dca30340.1.exon1;Parent=Dca30340.1
scaffold3028	Augustus	exon	20783	20827	.	+	.	ID=Dca30340.1.exon2;Parent=Dca30340.1
scaffold3028	Augustus	exon	21770	21946	.	+	.	ID=Dca30340.1.exon3;Parent=Dca30340.1
scaffold3028	Augustus	exon	22808	22906	.	+	.	ID=Dca30340.1.exon4;Parent=Dca30340.1
scaffold3028	Augus-PASA	exon	23896	23945	.	+	.	ID=Dca30340.1.exon5;Parent=Dca30340.1
scaffold3028	Augus-PASA	exon	24029	24117	.	+	.	ID=Dca30340.1.exon6;Parent=Dca30340.1
scaffold3028	Augus-PASA	exon	24771	24930	.	+	.	ID=Dca30340.1.exon7;Parent=Dca30340.1
scaffold3028	Augus-PASA	exon	25012	25117	.	+	.	ID=Dca30340.1.exon8;Parent=Dca30340.1
scaffold3028	Augus-PASA	exon	25209	25391	.	+	.	ID=Dca30340.1.exon9;Parent=Dca30340.1
scaffold3028	Augus-PASA	exon	25795	26025	.	+	.	ID=Dca30340.1.exon10;Parent=Dca30340.1
scaffold3028	Augus-PASA	exon	26795	26908	.	+	.	ID=Dca30340.1.exon11;Parent=Dca30340.1