Carnation DB

Dca32329.1

Annotation

9-exons
f-1
sp|B9HZX2_POPTR#Predicted protein#Populus trichocarpa (Western balsam poplar) (Populus balsamifera subsp trichocarpa)#ORFNames=POPTRDRAFT_568932#unknown#0F0P0C
AT3G15460.1 | Symbols: | Ribosomal RNA processing Brix domain protein | chr3:5214279-5216188 REVERSE LENGTH=315
Repeat List (scaffold3275)

Sequences

Blastp Summary

Trem (Uniprot-tremble)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca32329.1	1	309	500	49.8	309	81	2e-147
Target_name	Start	End	Length	Cov(%)
sp\|B9HZX2_POPTR	1	307	317	96.84

AtOs (Arabidopsis thaliana & Oryza sativa)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca32329.1	1	309	500	47.6	309	77	3e-141
Target_name	Start	End	Length	Cov(%)
AT3G15460.1	1	304	315	96.5

Coding region

seqname	source	feature	start	end	score	strand	frame	group
scaffold3275	Augustus	mRNA	11084	15733	.	-	.	ID=Dca32329.1;Parent=Dca32329
scaffold3275	Augustus	exon	11084	11658	.	-	.	ID=Dca32329.1.exon1;Parent=Dca32329.1
scaffold3275	Augustus	exon	12393	12492	.	-	.	ID=Dca32329.1.exon2;Parent=Dca32329.1
scaffold3275	Augus-PASA	exon	12609	12707	.	-	.	ID=Dca32329.1.exon3;Parent=Dca32329.1
scaffold3275	Augus-PASA	exon	12795	12863	.	-	.	ID=Dca32329.1.exon4;Parent=Dca32329.1
scaffold3275	Augus-PASA	exon	12962	13063	.	-	.	ID=Dca32329.1.exon5;Parent=Dca32329.1
scaffold3275	Augus-PASA	exon	13497	13621	.	-	.	ID=Dca32329.1.exon6;Parent=Dca32329.1
scaffold3275	Augus-PASA	exon	13939	14017	.	-	.	ID=Dca32329.1.exon7;Parent=Dca32329.1
scaffold3275	Augus-PASA	exon	14854	14995	.	-	.	ID=Dca32329.1.exon8;Parent=Dca32329.1
scaffold3275	Augus-PASA	exon	15522	15733	.	-	.	ID=Dca32329.1.exon9;Parent=Dca32329.1