Carnation DB

Dca32428.1

Annotation

13-exons
f-2
sp|B9N5A6_POPTR#Predicted protein#Populus trichocarpa (Western balsam poplar) (Populus balsamifera subsp trichocarpa)#ORFNames=POPTRDRAFT_1115918#GO:0008270#1F0P0C
Os11t0175500-01 Zinc finger, RING/FYVE/PHD-type domain containing protein.
Repeat List (scaffold329)

Sequences

Blastp Summary

Trem (Uniprot-tremble)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca32428.1	3	366	368	63.04	364	60	2e-136
Target_name	Start	End	Length	Cov(%)
sp\|B9N5A6_POPTR	76	463	465	83.44

AtOs (Arabidopsis thaliana & Oryza sativa)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca32428.1	1	366	368	57.88	366	54	3e-121
Target_name	Start	End	Length	Cov(%)
Os11t0175500-01	83	477	479	82.46

Coding region

seqname	source	feature	start	end	score	strand	frame	group
scaffold329	Augustus	mRNA	74159	80534	.	+	.	ID=Dca32428.1;Parent=Dca32428
scaffold329	Augustus	exon	74159	74256	.	+	.	ID=Dca32428.1.exon1;Parent=Dca32428.1
scaffold329	Augustus	exon	74969	75033	.	+	.	ID=Dca32428.1.exon2;Parent=Dca32428.1
scaffold329	Augustus	exon	75230	75321	.	+	.	ID=Dca32428.1.exon3;Parent=Dca32428.1
scaffold329	Augustus	exon	75447	75570	.	+	.	ID=Dca32428.1.exon4;Parent=Dca32428.1
scaffold329	Augustus	exon	75981	76067	.	+	.	ID=Dca32428.1.exon5;Parent=Dca32428.1
scaffold329	Augustus	exon	76694	76790	.	+	.	ID=Dca32428.1.exon6;Parent=Dca32428.1
scaffold329	Augustus	exon	76988	77020	.	+	.	ID=Dca32428.1.exon7;Parent=Dca32428.1
scaffold329	Augustus	exon	77590	77690	.	+	.	ID=Dca32428.1.exon8;Parent=Dca32428.1
scaffold329	Augustus	exon	78577	78642	.	+	.	ID=Dca32428.1.exon9;Parent=Dca32428.1
scaffold329	Augustus	exon	78728	78815	.	+	.	ID=Dca32428.1.exon10;Parent=Dca32428.1
scaffold329	Augustus	exon	79394	79454	.	+	.	ID=Dca32428.1.exon11;Parent=Dca32428.1
scaffold329	Augustus	exon	79585	79648	.	+	.	ID=Dca32428.1.exon12;Parent=Dca32428.1
scaffold329	Augustus	exon	80403	80534	.	+	.	ID=Dca32428.1.exon13;Parent=Dca32428.1