Dca32620.1
Annotation
- 4-exons
- f-1
- sp|O81506_ARATH#Putative retrotransposon protein#Arabidopsis thaliana (Mouse-ear cress)#Name=T7M24.7#GO:0003676;GO:0015074#1F1P0C
- Repeat List (scaffold3305)
Sequences
Blastp Summary
Trem (Uniprot-tremble)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca32620.1 |
303 |
565 |
565 |
27.61 |
263 |
59 |
2e-90
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| sp|O81506_ARATH |
406 |
669 |
964 |
27.38 |
AtOs (Arabidopsis thaliana & Oryza sativa)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca32620.1 |
321 |
565 |
565 |
17.16 |
245 |
40 |
7e-50
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| Os08t0125300-01 |
898 |
1139 |
1428 |
16.94 |
Coding region
| seqname |
source |
feature |
start |
end |
score |
strand |
frame |
group |
| scaffold3305 |
Augustus |
mRNA |
15637 |
18792 |
. |
- |
. |
ID=Dca32620.1;Parent=Dca32620 |
| scaffold3305 |
Augustus |
exon |
15637 |
16413 |
. |
- |
. |
ID=Dca32620.1.exon1;Parent=Dca32620.1 |
| scaffold3305 |
Augustus |
exon |
17199 |
17272 |
. |
- |
. |
ID=Dca32620.1.exon2;Parent=Dca32620.1 |
| scaffold3305 |
Augustus |
exon |
17855 |
18508 |
. |
- |
. |
ID=Dca32620.1.exon3;Parent=Dca32620.1 |
| scaffold3305 |
Augustus |
exon |
18600 |
18792 |
. |
- |
. |
ID=Dca32620.1.exon4;Parent=Dca32620.1 |
