Dca33065.1
Annotation
- 2-exons
- f-1
- sp|Q2QUJ4_ORYSJ#Retrotransposon protein, putative, Ty1-copia subclass#Oryza sativa subsp japonica (Rice)#ORFNames=LOC_Os12g16060#GO:0003676;GO:0008270;GO:0015074#2F1P0C
- Repeat List (scaffold33625)
Sequences
Blastp Summary
Trem (Uniprot-tremble)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca33065.1 |
1 |
210 |
212 |
73.11 |
210 |
66 |
1e-85
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| sp|Q2QUJ4_ORYSJ |
752 |
988 |
1050 |
22.57 |
AtOs (Arabidopsis thaliana & Oryza sativa)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca33065.1 |
1 |
170 |
212 |
26.88 |
170 |
34 |
2e-17
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| Os08t0125300-01 |
1135 |
1296 |
1428 |
11.34 |
Coding region
| seqname |
source |
feature |
start |
end |
score |
strand |
frame |
group |
| scaffold33625 |
Augustus |
mRNA |
104 |
821 |
. |
- |
. |
ID=Dca33065.1;Parent=Dca33065 |
| scaffold33625 |
Augustus |
exon |
104 |
240 |
. |
- |
. |
ID=Dca33065.1.exon1;Parent=Dca33065.1 |
| scaffold33625 |
Augustus |
exon |
323 |
821 |
. |
- |
. |
ID=Dca33065.1.exon2;Parent=Dca33065.1 |
