Carnation DB

Dca33164.1

Annotation

5-exons
f-1
sp|B9GXY1_POPTR#Predicted protein#Populus trichocarpa (Western balsam poplar) (Populus balsamifera subsp trichocarpa)#ORFNames=POPTRDRAFT_1074704#GO:0005488#1F0P0C
Os07t0171100-01 Tetratricopeptide-like helical domain containing protein.
Repeat List (scaffold338)

Sequences

Blastp Summary

Trem (Uniprot-tremble)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca33164.1	1	173	173	77.45	173	78	2e-73
Target_name	Start	End	Length	Cov(%)
sp\|B9GXY1_POPTR	174	344	344	49.7

AtOs (Arabidopsis thaliana & Oryza sativa)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca33164.1	1	173	173	75.72	173	76	2e-70
Target_name	Start	End	Length	Cov(%)
Os07t0171100-01	49	219	220	77.72

Coding region

seqname	source	feature	start	end	score	strand	frame	group
scaffold338	Augus-PASA	mRNA	113707	114579	.	+	.	ID=Dca33164.1;Parent=Dca33164
scaffold338	Augus-PASA	exon	113707	113826	.	+	.	ID=Dca33164.1.exon1;Parent=Dca33164.1
scaffold338	Augus-PASA	exon	113918	113994	.	+	.	ID=Dca33164.1.exon2;Parent=Dca33164.1
scaffold338	Augus-PASA	exon	114076	114196	.	+	.	ID=Dca33164.1.exon3;Parent=Dca33164.1
scaffold338	Augus-PASA	exon	114289	114348	.	+	.	ID=Dca33164.1.exon4;Parent=Dca33164.1
scaffold338	Augus-PASA	exon	114436	114579	.	+	.	ID=Dca33164.1.exon5;Parent=Dca33164.1