Dca33174.1
Annotation
- 2-exons
- f-1
- sp|Q2QUJ4_ORYSJ#Retrotransposon protein, putative, Ty1-copia subclass#Oryza sativa subsp japonica (Rice)#ORFNames=LOC_Os12g16060#GO:0003676;GO:0008270;GO:0015074#2F1P0C
- Repeat List (scaffold3382)
Sequences
Blastp Summary
Trem (Uniprot-tremble)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca33174.1 |
1 |
351 |
358 |
56.42 |
351 |
50 |
6e-102
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| sp|Q2QUJ4_ORYSJ |
142 |
534 |
1050 |
37.42 |
AtOs (Arabidopsis thaliana & Oryza sativa)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca33174.1 |
165 |
331 |
358 |
18.99 |
167 |
40 |
4e-29
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| Os11t0656500-01 |
595 |
762 |
1401 |
11.99 |
Coding region
| seqname |
source |
feature |
start |
end |
score |
strand |
frame |
group |
| scaffold3382 |
Augustus |
mRNA |
20517 |
22219 |
. |
+ |
. |
ID=Dca33174.1;Parent=Dca33174 |
| scaffold3382 |
Augustus |
exon |
20517 |
21048 |
. |
+ |
. |
ID=Dca33174.1.exon1;Parent=Dca33174.1 |
| scaffold3382 |
Augustus |
exon |
21675 |
22219 |
. |
+ |
. |
ID=Dca33174.1.exon2;Parent=Dca33174.1 |
