Carnation DB

Dca33248.1

Annotation

5-exons
f-1
sp|A9PFU9_POPTR#Predicted protein#Populus trichocarpa (Western balsam poplar) (Populus balsamifera subsp trichocarpa)#ORFNames=POPTRDRAFT_657316#GO:0003676;GO:0000166#2F0P0C
sp|B9SQT1_RICCO#Ribonucleoprotein, chloroplast, putative#Ricinus communis (Castor bean)#ORFNames=RCOM_1217370#GO:0030529;GO:0003676;GO:0000166#2F0P1C
Repeat List (scaffold3394)

Sequences

Blastp Summary

Trem (Uniprot-tremble)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca33248.1	101	179	588	5.78	79	44	2e-09
Target_name	Start	End	Length	Cov(%)
sp\|A9PFU9_POPTR	197	275	279	28.31

AtOs (Arabidopsis thaliana & Oryza sativa)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca33248.1	101	178	588	5.61	78	43	4e-10
Target_name	Start	End	Length	Cov(%)
Os02t0815200-01	235	312	317	24.6

Coding region

seqname	source	feature	start	end	score	strand	frame	group
scaffold3394	Augustus	mRNA	13738	18840	.	-	.	ID=Dca33248.1;Parent=Dca33248
scaffold3394	Augustus	exon	13738	14709	.	-	.	ID=Dca33248.1.exon1;Parent=Dca33248.1
scaffold3394	Augustus	exon	16335	16358	.	-	.	ID=Dca33248.1.exon2;Parent=Dca33248.1
scaffold3394	Augus-PASA	exon	17169	17441	.	-	.	ID=Dca33248.1.exon3;Parent=Dca33248.1
scaffold3394	Augus-PASA	exon	17580	17681	.	-	.	ID=Dca33248.1.exon4;Parent=Dca33248.1
scaffold3394	Augus-PASA	exon	18445	18840	.	-	.	ID=Dca33248.1.exon5;Parent=Dca33248.1