Carnation DB

Dca33306.1

Annotation

6-exons
f-1
sp|B9GFL2_POPTR#Predicted protein#Populus trichocarpa (Western balsam poplar) (Populus balsamifera subsp trichocarpa)#ORFNames=POPTRDRAFT_550198#GO:0005694;GO:0005524;GO:0003824;GO:0003677#3F0P1C
AT3G13170.1 | Symbols: ATSPO11-1 | Spo11/DNA topoisomerase VI, subunit A protein | chr3:4231560-4234192 REVERSE LENGTH=362
Repeat List (scaffold34)

Sequences

Blastp Summary

Trem (Uniprot-tremble)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca33306.1	1	78	166	33.73	78	72	2e-24
Target_name	Start	End	Length	Cov(%)
sp\|B9GFL2_POPTR	61	132	365	19.72

AtOs (Arabidopsis thaliana & Oryza sativa)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca33306.1	1	78	166	29.51	78	63	3e-22
Target_name	Start	End	Length	Cov(%)
AT3G13170.1	64	135	362	19.88

Coding region

seqname	source	feature	start	end	score	strand	frame	group
scaffold34	Augustus	mRNA	206110	208723	.	-	.	ID=Dca33306.1;Parent=Dca33306
scaffold34	Augustus	exon	206110	206238	.	-	.	ID=Dca33306.1.exon1;Parent=Dca33306.1
scaffold34	Augustus	exon	206503	206608	.	-	.	ID=Dca33306.1.exon2;Parent=Dca33306.1
scaffold34	Augustus	exon	206728	206759	.	-	.	ID=Dca33306.1.exon3;Parent=Dca33306.1
scaffold34	Augustus	exon	208281	208354	.	-	.	ID=Dca33306.1.exon4;Parent=Dca33306.1
scaffold34	Augustus	exon	208455	208574	.	-	.	ID=Dca33306.1.exon5;Parent=Dca33306.1
scaffold34	Augustus	exon	208684	208723	.	-	.	ID=Dca33306.1.exon6;Parent=Dca33306.1