Carnation DB

Dca33900.1

Annotation

5-exons
f-1
sp|D7TAY3_VITVI#Putative uncharacterized protein#Vitis vinifera (Grape)#OrderedLocusNames=VIT_01s0010g03620#GO:0009507;GO:0016020;GO:0009765#0F1P2C
sp|B9GML1_POPTR#Light-harvesting complex I protein Lhca2#Populus trichocarpa (Western balsam poplar) (Populus balsamifera subsp trichocarpa)#Name=Lhca2-1#GO:0009765#0F1P0C
Repeat List (scaffold348)

Sequences

Blastp Summary

Trem (Uniprot-tremble)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca33900.1	1	270	270	85.92	270	86	5e-134
Target_name	Start	End	Length	Cov(%)
sp\|D7TAY3_VITVI	1	271	271	100

AtOs (Arabidopsis thaliana & Oryza sativa)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca33900.1	1	270	270	79.25	270	79	3e-119
Target_name	Start	End	Length	Cov(%)
Os07t0577600-01	1	263	264	99.62

Coding region

seqname	source	feature	start	end	score	strand	frame	group
scaffold348	Augus-PASA	mRNA	31840	34076	.	-	.	ID=Dca33900.1;Parent=Dca33900
scaffold348	Augus-PASA	exon	31840	31857	.	-	.	ID=Dca33900.1.exon1;Parent=Dca33900.1
scaffold348	Augus-PASA	exon	32215	32729	.	-	.	ID=Dca33900.1.exon2;Parent=Dca33900.1
scaffold348	Augus-PASA	exon	32855	32892	.	-	.	ID=Dca33900.1.exon3;Parent=Dca33900.1
scaffold348	Augus-PASA	exon	33543	33728	.	-	.	ID=Dca33900.1.exon4;Parent=Dca33900.1
scaffold348	Augus-PASA	exon	34021	34076	.	-	.	ID=Dca33900.1.exon5;Parent=Dca33900.1