Dca340.1
Annotation
- 2-exons
- f-1
- sp|B9GSK1_POPTR#Predicted protein#Populus trichocarpa (Western balsam poplar) (Populus balsamifera subsp trichocarpa)#ORFNames=POPTRDRAFT_798547#GO:0003677;GO:0006355#1F1P0C
- AT3G63270.1 | Symbols: | CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912); BEST Arabidopsis thaliana protein match is: PIF / Ping-Pong family of plant transposases (TAIR:AT3G55350.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr3:23375932-23377398 REVERSE LENGTH=396
- Repeat List (scaffold1002)
Sequences
Blastp Summary
Trem (Uniprot-tremble)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca340.1 |
29 |
387 |
388 |
68.81 |
359 |
74 |
7e-155
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| sp|B9GSK1_POPTR |
31 |
391 |
397 |
90.93 |
AtOs (Arabidopsis thaliana & Oryza sativa)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca340.1 |
27 |
382 |
388 |
61.59 |
356 |
66 |
1e-140
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| AT3G63270.1 |
31 |
387 |
396 |
90.15 |
Coding region
| seqname |
source |
feature |
start |
end |
score |
strand |
frame |
group |
| scaffold1002 |
Augus-PASA |
mRNA |
65074 |
66906 |
. |
- |
. |
ID=Dca340.1;Parent=Dca340 |
| scaffold1002 |
Augus-PASA |
exon |
65074 |
66083 |
. |
- |
. |
ID=Dca340.1.exon1;Parent=Dca340.1 |
| scaffold1002 |
Augus-PASA |
exon |
66750 |
66906 |
. |
- |
. |
ID=Dca340.1.exon2;Parent=Dca340.1 |
