Dca34305.1
Annotation
- 4-exons
- f-1
- sp|B9S7Y9_RICCO#Putative uncharacterized protein#Ricinus communis (Castor bean)#ORFNames=RCOM_1382930#unknown#0F0P0C
- AT4G33780.1 | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: short hypocotyl in white light1 (TAIR:AT1G69935.1); Has 40 Blast hits to 40 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 40; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr4:16202174-16203617 REVERSE LENGTH=203
- Repeat List (scaffold3530)
Sequences
Blastp Summary
Trem (Uniprot-tremble)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca34305.1 |
18 |
204 |
204 |
53.43 |
187 |
58 |
2e-49
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| sp|B9S7Y9_RICCO |
25 |
200 |
200 |
88 |
AtOs (Arabidopsis thaliana & Oryza sativa)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca34305.1 |
41 |
204 |
204 |
49.5 |
164 |
61 |
2e-41
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| AT4G33780.1 |
41 |
203 |
203 |
80.29 |
Coding region
| seqname |
source |
feature |
start |
end |
score |
strand |
frame |
group |
| scaffold3530 |
Augus-PASA |
mRNA |
31608 |
33322 |
. |
+ |
. |
ID=Dca34305.1;Parent=Dca34305 |
| scaffold3530 |
Augus-PASA |
exon |
31608 |
31775 |
. |
+ |
. |
ID=Dca34305.1.exon1;Parent=Dca34305.1 |
| scaffold3530 |
Augus-PASA |
exon |
31868 |
32092 |
. |
+ |
. |
ID=Dca34305.1.exon2;Parent=Dca34305.1 |
| scaffold3530 |
Augus-PASA |
exon |
32518 |
32583 |
. |
+ |
. |
ID=Dca34305.1.exon3;Parent=Dca34305.1 |
| scaffold3530 |
Augus-PASA |
exon |
33167 |
33322 |
. |
+ |
. |
ID=Dca34305.1.exon4;Parent=Dca34305.1 |
