Dca34778.1
Annotation
- 4-exons
- f-1
- sp|G8A2K5_MEDTR#Putative uncharacterized protein#Medicago truncatula (Barrel medic) (Medicago tribuloides)#ORFNames=MTR_136s0027, MTR_1g095620#unknown#0F0P0C
- AT5G52980.1 | Symbols: | CONTAINS InterPro DOMAIN/s: ATPase, vacuolar ER assembly factor, Vma12 (InterPro:IPR021013); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:21482329-21483642 REVERSE LENGTH=222
- Repeat List (scaffold3599)
Sequences
Blastp Summary
Trem (Uniprot-tremble)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca34778.1 |
15 |
220 |
220 |
59.09 |
206 |
62 |
7e-67
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| sp|G8A2K5_MEDTR |
10 |
216 |
216 |
95.83 |
AtOs (Arabidopsis thaliana & Oryza sativa)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca34778.1 |
13 |
203 |
220 |
55.9 |
191 |
65 |
1e-64
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| AT5G52980.1 |
8 |
192 |
222 |
83.33 |
Coding region
| seqname |
source |
feature |
start |
end |
score |
strand |
frame |
group |
| scaffold3599 |
Augustus |
mRNA |
28802 |
30983 |
. |
- |
. |
ID=Dca34778.1;Parent=Dca34778 |
| scaffold3599 |
Augustus |
exon |
28802 |
28939 |
. |
- |
. |
ID=Dca34778.1.exon1;Parent=Dca34778.1 |
| scaffold3599 |
Augustus |
exon |
29063 |
29148 |
. |
- |
. |
ID=Dca34778.1.exon2;Parent=Dca34778.1 |
| scaffold3599 |
Augustus |
exon |
30025 |
30163 |
. |
- |
. |
ID=Dca34778.1.exon3;Parent=Dca34778.1 |
| scaffold3599 |
Augustus |
exon |
30684 |
30983 |
. |
- |
. |
ID=Dca34778.1.exon4;Parent=Dca34778.1 |
