Carnation DB

Dca34780.1

Annotation

6-exons
f-1
sp|Q2QMW8_ORYSJ#Transposon protein, putative, CACTA, En/Spm sub-class#Oryza sativa subsp japonica (Rice)#ORFNames=LOC_Os12g39760#unknown#0F0P0C
Repeat List (scaffold36)

Sequences

Blastp Summary

Trem (Uniprot-tremble)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca34780.1	1	224	607	22.07	224	60	2e-79
Target_name	Start	End	Length	Cov(%)
sp\|Q2QMW8_ORYSJ	172	396	1095	20.54

AtOs (Arabidopsis thaliana & Oryza sativa)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca34780.1	17	223	607	15.65	207	46	2e-49
Target_name	Start	End	Length	Cov(%)
Os01t0650800-01	2	203	333	60.66

Coding region

seqname	source	feature	start	end	score	strand	frame	group
scaffold36	Augustus	mRNA	14330	16723	.	-	.	ID=Dca34780.1;Parent=Dca34780
scaffold36	Augustus	exon	14330	14414	.	-	.	ID=Dca34780.1.exon1;Parent=Dca34780.1
scaffold36	Augustus	exon	14503	14810	.	-	.	ID=Dca34780.1.exon2;Parent=Dca34780.1
scaffold36	Augustus	exon	14903	15160	.	-	.	ID=Dca34780.1.exon3;Parent=Dca34780.1
scaffold36	Augustus	exon	15296	15718	.	-	.	ID=Dca34780.1.exon4;Parent=Dca34780.1
scaffold36	Augustus	exon	15823	15901	.	-	.	ID=Dca34780.1.exon5;Parent=Dca34780.1
scaffold36	Augustus	exon	16053	16723	.	-	.	ID=Dca34780.1.exon6;Parent=Dca34780.1