Carnation DB

Dca35916.1

Annotation

7-exons
f-1
sp|B9N010_POPTR#Predicted protein#Populus trichocarpa (Western balsam poplar) (Populus balsamifera subsp trichocarpa)#ORFNames=POPTRDRAFT_742328#GO:0005576;GO:0004650;GO:0005975;GO:0007047#1F2P1C
sp|B9SH91_RICCO#Polygalacturonase, putative#Ricinus communis (Castor bean)#ORFNames=RCOM_0527870#GO:0005576;GO:0047911;GO:0004650;GO:0005975;GO:0007047#2F2P1C
Repeat List (scaffold376)

Sequences

Blastp Summary

Trem (Uniprot-tremble)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca35916.1	3	319	323	56.96	317	57	5e-102
Target_name	Start	End	Length	Cov(%)
sp\|B9N010_POPTR	4	321	445	71.46

AtOs (Arabidopsis thaliana & Oryza sativa)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca35916.1	61	319	323	49.22	259	62	2e-95
Target_name	Start	End	Length	Cov(%)
AT1G23460.1	66	324	460	56.3

Coding region

seqname	source	feature	start	end	score	strand	frame	group
scaffold376	Augustus	mRNA	70035	72094	.	-	.	ID=Dca35916.1;Parent=Dca35916
scaffold376	Augustus	exon	70035	70158	.	-	.	ID=Dca35916.1.exon1;Parent=Dca35916.1
scaffold376	Augustus	exon	70368	70449	.	-	.	ID=Dca35916.1.exon2;Parent=Dca35916.1
scaffold376	Augustus	exon	70650	70857	.	-	.	ID=Dca35916.1.exon3;Parent=Dca35916.1
scaffold376	Augustus	exon	70950	70970	.	-	.	ID=Dca35916.1.exon4;Parent=Dca35916.1
scaffold376	Augustus	exon	71060	71230	.	-	.	ID=Dca35916.1.exon5;Parent=Dca35916.1
scaffold376	Augustus	exon	71636	71764	.	-	.	ID=Dca35916.1.exon6;Parent=Dca35916.1
scaffold376	Augustus	exon	71858	72094	.	-	.	ID=Dca35916.1.exon7;Parent=Dca35916.1