Dca37483.1
Annotation
- 3-exons
- f-1
- sp|Q2QMT9_ORYSJ#Retrotransposon protein, putative, unclassified#Oryza sativa subsp japonica (Rice)#ORFNames=LOC_Os12g40050#unknown#0F0P0C
- Repeat List (scaffold3999)
Sequences
Blastp Summary
Trem (Uniprot-tremble)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca37483.1 |
332 |
1095 |
1104 |
34.6 |
764 |
45 |
0
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| sp|Q2QMT9_ORYSJ |
140 |
974 |
989 |
84.42 |
AtOs (Arabidopsis thaliana & Oryza sativa)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca37483.1 |
649 |
1055 |
1104 |
16.39 |
407 |
40 |
1e-96
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| AT4G23160.1 |
98 |
554 |
1262 |
36.21 |
Coding region
| seqname |
source |
feature |
start |
end |
score |
strand |
frame |
group |
| scaffold3999 |
Augustus |
mRNA |
159 |
4400 |
. |
+ |
. |
ID=Dca37483.1;Parent=Dca37483 |
| scaffold3999 |
Augustus |
exon |
159 |
1654 |
. |
+ |
. |
ID=Dca37483.1.exon1;Parent=Dca37483.1 |
| scaffold3999 |
Augustus |
exon |
2440 |
3070 |
. |
+ |
. |
ID=Dca37483.1.exon2;Parent=Dca37483.1 |
| scaffold3999 |
Augustus |
exon |
3213 |
4400 |
. |
+ |
. |
ID=Dca37483.1.exon3;Parent=Dca37483.1 |
