Carnation DB

Dca3977.1

Annotation

2-exons
f-1
sp|B9H0C6_POPTR#Predicted protein#Populus trichocarpa (Western balsam poplar) (Populus balsamifera subsp trichocarpa)#ORFNames=POPTRDRAFT_800704#unknown#0F0P0C
AT2G03820.1 | Symbols: | nonsense-mediated mRNA decay NMD3 family protein | chr2:1165149-1166699 REVERSE LENGTH=516
Repeat List (scaffold1144)

Sequences

Blastp Summary

Trem (Uniprot-tremble)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca3977.1	47	551	557	68.04	505	75	0
Target_name	Start	End	Length	Cov(%)
sp\|B9H0C6_POPTR	1	507	511	99.21

AtOs (Arabidopsis thaliana & Oryza sativa)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca3977.1	47	544	557	59.96	498	67	0
Target_name	Start	End	Length	Cov(%)
AT2G03820.1	3	501	516	96.7

Coding region

seqname	source	feature	start	end	score	strand	frame	group
scaffold1144	Augus-PASA	mRNA	58561	62588	.	-	.	ID=Dca3977.1;Parent=Dca3977
scaffold1144	Augus-PASA	exon	58561	60112	.	-	.	ID=Dca3977.1.exon1;Parent=Dca3977.1
scaffold1144	Augus-PASA	exon	62467	62588	.	-	.	ID=Dca3977.1.exon2;Parent=Dca3977.1
scaffold1144	Augus-PASA	mRNA	58561	60873	.	-	.	ID=Dca3977.2;Parent=Dca3977
scaffold1144	Augus-PASA	exon	58561	60112	.	-	.	ID=Dca3977.2.exon1;Parent=Dca3977.2
scaffold1144	Augus-PASA	exon	60749	60873	.	-	.	ID=Dca3977.2.exon2;Parent=Dca3977.2